Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 0.0e+00 1085.5 563 100.0
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 8.9e-267 923.3 589 85.6
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 5.5e-160 568.5 453 68.4
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 6.1e-151 538.5 1007 39.7
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 3.2e-123 446.4 868 38.9
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 1.3e-113 414.5 510 49.8
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 6.4e-108 395.6 989 34.0
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 7.9e-106 388.7 466 52.1
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 1.3e-105 387.9 493 49.5
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 1.3e-105 387.9 958 34.9
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 6.2e-103 379.0 485 50.5
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.1e-102 378.3 307 68.4
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 4.6e-98 362.8 432 52.1
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 7.9e-98 362.1 432 52.1
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.0e-97 361.7 848 35.8
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 2.8e-95 353.6 462 47.6
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.1e-94 351.7 488 46.5
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 1.0e-92 345.1 479 46.1
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 2.9e-92 343.6 479 44.7
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 3.8e-92 343.2 479 45.7
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 2.5e-91 340.5 432 50.5
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 9.3e-91 338.6 437 51.0
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 1.2e-90 338.2 456 45.0
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 1.6e-90 337.8 451 48.8
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 2.1e-90 337.4 956 30.8
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 2.1e-90 337.4 475 47.2
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 4.6e-90 336.3 443 49.4
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 2.5e-88 330.5 472 47.7
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.5e-88 330.5 427 49.9
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 1.3e-87 328.2 479 45.7
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 2.2e-87 327.4 506 43.7
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 3.7e-87 326.6 479 45.9
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.1e-86 325.1 479 45.7
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 9.0e-86 322.0 479 45.5
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 9.0e-86 322.0 486 47.1
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 1.2e-85 321.6 532 43.8
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 1.2e-85 321.6 529 43.3
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 2.0e-85 320.9 449 46.3
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 2.0e-85 320.9 485 44.7
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 2.5e-83 313.9 477 45.9
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 5.5e-83 312.8 484 45.9
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 2.1e-82 310.8 477 45.3
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 3.6e-82 310.1 508 41.1
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 4.6e-82 309.7 806 33.4
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 2.0e-80 304.3 527 43.3
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 7.4e-80 302.4 453 45.9
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 9.7e-80 302.0 477 45.3
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 1.3e-79 301.6 464 44.4
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.7e-79 301.2 484 44.4
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.8e-79 300.4 481 44.7
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.8e-79 299.7 481 44.5
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 8.2e-79 298.9 457 45.1
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 1.8e-78 297.7 482 41.9
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 2.0e-77 294.3 479 44.3
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.3e-76 291.6 483 44.3
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 3.8e-76 290.0 473 43.1
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 3.8e-76 290.0 533 39.8
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 5.0e-76 289.7 514 38.9
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 3.0e-73 280.4 478 42.3
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 1.1e-72 278.5 471 41.2
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 2.0e-72 277.7 536 41.4
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 4.4e-72 276.6 510 41.2
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 1.7e-71 274.6 458 43.4
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 3.1e-70 270.4 458 42.8
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 4.5e-69 266.5 461 39.9
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 5.9e-69 266.2 457 41.6
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 1.0e-68 265.4 462 42.0
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 6.5e-68 262.7 461 42.3
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 5.5e-67 259.6 488 38.3
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 2.1e-66 257.7 439 42.1
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 2.1e-66 257.7 807 31.6
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 6.1e-66 256.1 489 38.2
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 8.0e-66 255.8 478 40.2
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 8.0e-66 255.8 484 40.5
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 4.0e-65 253.4 522 37.9
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 2.6e-64 250.8 469 39.9
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 2.6e-64 250.8 246 58.9
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 9.7e-64 248.8 430 42.6
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 1.3e-63 248.4 479 38.2
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 1.8e-62 244.6 535 36.6
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 2.4e-62 244.2 479 38.0
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 7.0e-62 242.7 513 36.8
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 7.7e-61 239.2 477 38.6
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 3.8e-60 236.9 334 46.1
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 8.5e-60 235.7 248 57.7
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 3.2e-59 233.8 467 37.3
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 4.2e-59 233.4 485 36.9
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 5.5e-59 233.0 449 39.4
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 1.0e-57 228.8 475 38.3
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 1.4e-57 228.4 462 39.6
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 1.8e-57 228.0 541 34.6
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 3.7e-55 220.3 565 34.0
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 2.4e-54 217.6 483 34.4
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 3.1e-54 217.2 481 36.6
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 4.1e-54 216.9 488 34.2
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 1.3e-52 211.8 483 34.0
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.3e-52 211.8 379 42.0
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 7.2e-51 206.1 482 34.6
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 7.2e-51 206.1 482 34.6
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 9.4e-51 205.7 477 34.4
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 4.7e-50 203.4 477 34.2
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 1.4e-49 201.8 486 33.3
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 9.8e-48 195.7 662 31.9
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 1.3e-47 195.3 485 33.8
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.2e-40 172.2 147 68.0
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.4e-40 170.2 293 41.0
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 8.3e-39 166.0 444 31.5
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 4.1e-38 163.7 463 32.4
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 2.7e-37 161.0 535 30.3
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 3.0e-36 157.5 443 32.5
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 8.0e-34 149.4 144 63.9
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 3.4e-32 144.1 364 34.1
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 5.8e-32 143.3 157 59.9
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 5.8e-32 143.3 419 28.9
Actinidia30732 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.4e-30 138.7 161 53.4
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 1.3e-28 132.1 436 30.7
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.1e-25 122.5 137 56.2
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 3.2e-22 110.9 138 50.7
Actinidia34180 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.5e-19 102.1 111 55.9
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 2.1e-18 98.2 205 34.6
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 8.1e-18 96.3 129 47.3
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 2.7e-13 81.3 99 56.6
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 7.8e-13 79.7 200 30.5
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 6.6e-12 76.6 85 56.5
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 1.6e-10 72.0 130 42.3
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 3.6e-10 70.9 192 29.7
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 1.1e-06 59.3 146 36.3
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 2.4e-06 58.2 173 31.8


User provided reference genes

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