Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.5e-243 845.9 465 100.0
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.4e-238 829.3 465 98.3
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.3e-159 566.2 492 67.7
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 9.0e-140 501.1 435 66.4
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 7.4e-134 481.5 443 65.9
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 1.6e-133 480.3 503 62.0
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 6.5e-130 468.4 474 65.0
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 1.1e-129 467.6 544 53.5
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 5.7e-126 455.3 531 53.5
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 1.1e-124 451.1 531 53.1
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 3.1e-124 449.5 491 59.5
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.0e-123 446.8 494 59.3
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 7.9e-120 434.9 505 59.6
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 1.5e-118 430.6 495 60.0
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 6.3e-117 425.2 501 53.5
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 1.8e-116 423.7 500 58.0
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 3.1e-116 422.9 507 57.4
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 4.1e-116 422.5 499 58.5
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 1.5e-115 420.6 506 56.7
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 1.0e-114 417.9 507 52.9
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 1.7e-114 417.2 512 58.4
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 1.7e-114 417.2 497 56.9
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 2.7e-112 409.8 485 54.8
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 7.9e-112 408.3 467 60.4
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 1.8e-111 407.1 500 53.8
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 3.9e-111 406.0 494 53.2
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 3.9e-111 406.0 505 53.3
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 5.1e-111 405.6 506 52.6
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 8.8e-111 404.8 476 59.5
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 1.1e-110 404.4 497 51.7
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 2.0e-110 403.7 483 54.5
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 2.0e-110 403.7 509 52.1
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 3.3e-110 402.9 514 56.8
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 3.3e-110 402.9 505 57.0
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 3.3e-110 402.9 475 54.9
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.3e-109 401.0 506 50.6
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 2.2e-109 400.2 480 52.7
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 2.8e-109 399.8 540 48.5
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 3.7e-109 399.4 471 60.5
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 8.2e-109 398.3 502 57.4
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 6.9e-108 395.2 507 55.0
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 2.0e-107 393.7 518 52.5
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 5.9e-107 392.1 501 57.5
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 7.7e-107 391.7 509 50.1
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 1.7e-106 390.6 473 53.5
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 2.9e-106 389.8 495 57.0
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 3.8e-106 389.4 501 55.9
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 1.1e-105 387.9 466 54.3
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 1.6e-104 384.0 523 51.4
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 2.1e-104 383.6 494 52.4
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 2.1e-104 383.6 494 52.4
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 2.1e-104 383.6 494 52.4
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 1.8e-103 380.6 479 51.4
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.8e-103 380.6 500 52.4
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 1.8e-103 380.6 481 56.3
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 1.7e-101 374.0 449 54.6
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 2.2e-101 373.6 494 54.5
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 8.2e-101 371.7 467 56.7
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 4.1e-100 369.4 493 49.7
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 2.2e-98 363.6 484 51.0
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 2.9e-98 363.2 500 49.4
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 3.8e-98 362.8 525 49.0
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 5.0e-98 362.5 468 51.5
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 4.2e-97 359.4 486 56.0
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 4.2e-97 359.4 525 52.6
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 5.5e-97 359.0 283 77.0
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 6.7e-95 352.1 492 54.3
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 1.1e-94 351.3 496 48.4
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 1.5e-94 350.9 508 52.6
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 2.0e-94 350.5 417 52.0
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 3.3e-94 349.7 488 48.8
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 4.4e-94 349.4 435 51.3
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 3.1e-92 343.2 438 51.1
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 5.3e-92 342.4 501 47.5
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 1.2e-91 341.3 508 47.4
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 1.6e-91 340.9 467 50.1
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 1.3e-90 337.8 504 44.8
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 1.3e-90 337.8 508 45.9
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 1.7e-90 337.4 556 46.4
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 1.1e-89 334.7 440 50.0
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 1.2e-88 331.3 440 55.0
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 2.1e-88 330.5 474 53.8
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 2.3e-87 327.0 435 54.3
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 1.2e-86 324.7 442 54.3
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 4.4e-86 322.8 484 47.1
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 2.4e-84 317.0 492 46.3
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 2.4e-84 317.0 476 52.1
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 3.1e-84 316.6 503 45.7
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 3.1e-84 316.6 479 51.4
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 4.1e-84 316.2 486 50.0
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 2.7e-83 313.5 468 51.3
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 3.5e-83 313.2 464 48.9
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 5.9e-83 312.4 492 45.9
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 1.0e-82 311.6 470 47.0
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 3.8e-82 309.7 492 49.4
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.5e-81 307.0 290 59.0
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 1.2e-80 304.7 485 47.8
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 8.0e-80 302.0 328 62.5
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 6.6e-74 282.3 507 44.0
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 4.7e-72 276.2 289 55.7
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 6.4e-69 265.8 448 43.5
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 8.3e-69 265.4 423 43.3
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 3.9e-66 256.5 298 54.7
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 1.4e-63 248.1 494 39.1
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 1.4e-63 248.1 498 41.4
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 5.2e-63 246.1 474 43.5
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 1.3e-58 231.5 571 36.1
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 1.1e-55 221.9 292 50.0
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 3.4e-54 216.9 457 38.5
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 2.4e-52 210.7 437 41.6
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 5.6e-49 199.5 494 40.9
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 7.6e-46 189.1 154 64.3
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 1.1e-44 185.3 272 48.5
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 5.2e-39 166.4 138 69.6
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 1.1e-36 158.7 150 60.0
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 7.8e-35 152.5 167 56.3
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 2.7e-27 127.5 200 53.5
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 7.9e-27 125.9 72 84.7
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.5e-25 121.7 137 54.7
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.8e-24 117.5 72 80.6
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 1.4e-23 115.2 415 28.7
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 1.4e-23 115.2 475 29.1
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 1.7e-21 108.2 420 36.4
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.3e-18 98.6 96 53.1
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 3.0e-18 97.4 530 26.0
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 2.1e-16 91.3 88 59.1
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 1.2e-14 85.5 319 30.4
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 1.0e-13 82.4 407 27.8
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-12 77.0 84 40.5
Nn2g15616 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.3e-08 65.5 45 68.9
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 2.8e-08 64.3 220 25.5
DCAR_014505 Daucus carota HOM05D001310 ORTHO05D001283 7.6e-06 56.2 122 32.8


User provided reference genes

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