Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038772 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 2.0e-200 702.2 354 100.0
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 4.7e-197 691.0 350 99.1
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 2.0e-168 595.9 351 84.6
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 1.5e-166 589.7 351 84.3
Dinv15773 Davidia involucrata HOM05D003511 ORTHO05D004403 1.6e-165 586.3 351 84.3
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 1.8e-156 556.2 351 79.5
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 4.1e-153 545.0 351 77.2
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 1.6e-152 543.1 365 76.2
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 1.1e-150 537.0 350 75.7
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 1.9e-150 536.2 353 78.5
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 2.5e-150 535.8 351 76.9
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 4.3e-150 535.0 351 77.5
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 5.6e-150 534.6 351 75.2
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 2.1e-149 532.7 351 76.1
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 3.6e-149 531.9 351 75.2
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 1.1e-148 530.4 351 75.8
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 4.0e-148 528.5 350 75.7
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 7.5e-147 524.2 351 74.9
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 9.9e-147 523.9 351 73.8
vmacro02524 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 2.2e-146 522.7 351 75.8
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 2.9e-146 522.3 350 75.1
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 3.7e-146 521.9 350 74.3
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 4.9e-146 521.5 350 74.0
TAR381G0463 Trochodendron aralioides HOM05D003511 ORTHO05D004403 4.9e-146 521.5 350 75.4
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 6.4e-146 521.2 350 74.3
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 1.1e-145 520.4 350 74.3
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 2.1e-144 516.2 351 74.1
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 3.5e-144 515.4 351 72.9
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 6.0e-144 514.6 351 75.2
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 1.1e-142 510.4 350 72.0
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 9.5e-142 507.3 351 72.9
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 2.8e-141 505.8 351 72.4
MD10G1099400 Malus domestica HOM05D003511 ORTHO05D004403 3.6e-141 505.4 351 73.5
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 1.8e-140 503.1 351 72.9
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 8.9e-140 500.7 351 70.9
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 2.0e-139 499.6 351 72.6
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 1.3e-138 496.9 351 70.7
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 1.3e-138 496.9 350 71.1
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 1.7e-138 496.5 351 72.1
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 2.2e-138 496.1 351 70.9
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 2.2e-138 496.1 350 71.7
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 3.8e-138 495.4 364 69.5
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 1.1e-137 493.8 351 70.9
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.4e-137 493.4 351 70.7
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 4.1e-137 491.9 351 70.4
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.1e-137 491.9 351 70.4
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.1e-137 491.9 351 70.7
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 7.1e-137 491.1 351 70.7
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 1.6e-136 490.0 351 69.8
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 2.1e-136 489.6 350 69.7
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 5.1e-135 485.0 351 69.5
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 6.6e-135 484.6 355 69.9
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 6.6e-135 484.6 351 69.2
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 2.5e-134 482.6 352 68.8
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 4.7e-133 478.4 318 77.4
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 8.1e-133 477.6 351 67.8
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 8.1e-133 477.6 350 68.3
TPR.G19062 Trifolium pratense HOM05D003511 ORTHO05D004403 1.4e-132 476.9 351 68.7
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 2.4e-132 476.1 350 69.1
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 3.1e-132 475.7 350 67.7
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 3.1e-132 475.7 329 77.5
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 3.1e-132 475.7 329 77.5
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 5.2e-132 474.9 389 64.3
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 2.0e-131 473.0 350 68.0
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 4.4e-131 471.9 351 67.8
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 4.4e-131 471.9 351 69.5
Sed0023024 Sechium edule HOM05D003511 ORTHO05D004403 1.3e-130 470.3 352 68.2
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 3.8e-130 468.8 349 69.6
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 3.8e-130 468.8 351 67.2
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.9e-130 468.4 351 69.2
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 6.4e-130 468.0 352 68.8
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 2.4e-129 466.1 353 67.4
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 2.4e-129 466.1 351 68.4
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 3.2e-129 465.7 351 66.1
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 3.2e-129 465.7 351 67.2
Sabra16G0187700 Salix brachista HOM05D003511 ORTHO05D004403 5.4e-129 464.9 421 58.9
Psat6g217200 Pisum sativum HOM05D003511 ORTHO05D004403 7.1e-129 464.5 352 66.8
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 9.3e-129 464.2 351 66.1
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 1.2e-128 463.8 351 66.4
MELO3C019553.2 Cucumis melo HOM05D003511 ORTHO05D004403 1.6e-128 463.4 352 68.2
MBI16_g33969_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 4.6e-128 461.8 374 64.7
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 7.8e-128 461.1 351 65.5
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 1.3e-127 460.3 365 64.7
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 3.9e-127 458.8 351 65.5
MBI16_g16349_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 5.1e-127 458.4 374 64.4
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 1.1e-126 457.2 352 67.0
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 3.3e-126 455.7 352 66.8
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 1.6e-125 453.4 351 65.0
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 6.2e-125 451.4 365 63.3
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 2.4e-124 449.5 353 64.9
Medtr4g127370 Medicago truncatula HOM05D003511 ORTHO05D004403 4.0e-124 448.7 351 65.2
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 6.9e-124 448.0 352 63.9
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 6.9e-124 448.0 353 64.3
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.0e-123 446.4 352 64.5
Prupe.8G137300 Prunus persica HOM05D003511 ORTHO05D004403 2.6e-123 446.0 305 75.1
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 6.4e-122 441.4 345 64.9
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 6.4e-122 441.4 352 64.2
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 8.4e-122 441.0 352 64.8
Ah.01g010970 Amaranthus hybridus HOM05D003511 ORTHO05D004403 7.1e-121 438.0 353 64.6
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 2.7e-120 436.0 365 60.0
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 2.3e-119 433.0 354 63.8
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 3.9e-119 432.2 350 63.4
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 3.9e-119 432.2 362 63.3
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 5.1e-119 431.8 351 63.8
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 1.9e-118 429.9 351 64.1
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 3.3e-118 429.1 353 63.7
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 1.3e-117 427.2 364 59.3
AUR62010328 Chenopodium quinoa HOM05D003511 ORTHO05D004403 4.8e-117 425.2 353 63.5
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 6.2e-117 424.9 318 68.6
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 8.1e-117 424.5 351 63.8
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 8.1e-117 424.5 351 62.7
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 1.4e-116 423.7 355 63.1
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 3.1e-116 422.5 353 63.2
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 1.5e-115 420.2 355 62.3
Rhsim10G0162100 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.5e-115 420.2 292 73.6
Potri.001G298900 Populus trichocarpa HOM05D003511 ORTHO05D004403 9.9e-115 417.5 351 61.5
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 2.9e-114 416.0 371 60.6
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 3.8e-114 415.6 359 59.6
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 6.4e-114 414.8 351 61.8
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 1.2e-112 410.6 353 61.5
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 4.6e-112 408.7 359 58.2
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 2.3e-111 406.4 359 58.8
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 3.0e-111 406.0 316 68.0
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 6.7e-111 404.8 359 57.9
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 8.7e-111 404.4 359 57.7
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 3.7e-109 399.1 359 56.3
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 3.7e-109 399.1 350 60.0
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 6.2e-109 398.3 350 61.7
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 1.4e-108 397.1 352 59.7
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 1.8e-108 396.7 349 60.2
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 4.0e-108 395.6 359 56.5
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 4.0e-108 395.6 379 57.5
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 6.9e-108 394.8 359 56.3
HPP92_006064 Vanilla planifolia HOM05D003511 ORTHO05D004403 2.0e-107 393.3 360 58.3
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 1.4e-105 387.1 358 55.3
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 2.5e-105 386.3 358 55.3
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 2.5e-105 386.3 358 55.3
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 3.2e-105 386.0 359 56.0
Peaxi162Scf00016g02427 Petunia axillaris HOM05D003511 ORTHO05D004403 1.6e-104 383.6 298 64.8
Sed0017826 Sechium edule HOM05D003511 ORTHO05D004403 7.9e-104 381.3 303 65.7
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 1.3e-103 380.6 358 54.7
SEGI_03881 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 1.8e-103 380.2 361 54.8
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 2.3e-103 379.8 358 54.7
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 9.4e-97 357.8 350 56.9
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 3.9e-95 352.4 350 51.4
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 7.4e-94 348.2 363 52.9
RcHm_v2.0_Chr6g0254581 Rosa chinensis HOM05D003511 ORTHO05D004403 4.1e-92 342.4 238 72.3
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 3.8e-90 335.9 386 52.6
Lsat_1_v5_gn_5_116340 Lactuca sativa HOM05D003511 ORTHO05D004403 6.5e-90 335.1 302 58.6
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 8.5e-90 334.7 334 56.0
Zm00001eb027590 Zea mays HOM05D003511 ORTHO05D004403 9.4e-81 304.7 356 48.6
SMO116G0225 Selaginella moellendorffii HOM05D003511 ORTHO05D004403 2.3e-79 300.1 355 46.5
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 2.0e-78 297.0 383 46.5
Pp3c19_10350 Physcomitrium patens HOM05D003511 ORTHO05D004403 1.6e-75 287.3 387 41.9
SEGI_08298 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 1.1e-73 281.2 288 53.5
CSS0009203 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 7.2e-73 278.5 150 92.0
CSS0016029 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 7.2e-73 278.5 150 92.0
Mapoly0115s0027 Marchantia polymorpha HOM05D003511 ORTHO05D004403 2.1e-64 250.4 380 36.8
Oeu042151.1 Olea europaea HOM05D003511 ORTHO05D004403 9.2e-36 155.2 118 66.9
Lsat_1_v5_gn_2_5441 Lactuca sativa HOM05D003511 ORTHO05D229135 3.1e-23 113.6 170 43.5
SalBow6G6056 Salvia bowleyana HOM05D003511 ORTHO05D004403 2.0e-22 110.9 82 65.9
AagrBONN_evm.TU.Sc2ySwM_344.4246 Anthoceros agrestis HOM05D003511 ORTHO05D004403 4.9e-13 79.7 86 44.2
SEGI_37563 Sequoiadendron giganteum HOM05D003511 ORTHO05D385140 3.5e-11 73.6 65 52.3
Glyma.10G260750 Glycine max HOM05D003511 ORTHO05D004403 7.8e-11 72.4 49 65.3
CSS0034894 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.0e-10 72.0 43 74.4
AagrBONN_evm.TU.Sc2ySwM_344.4245 Anthoceros agrestis HOM05D003511 ORTHO05D004403 1.6e-08 64.7 95 37.9
DCAR_001658 Daucus carota HOM05D003511 ORTHO05D175251 2.8e-08 63.9 69 50.7


User provided reference genes

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