Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.6e-153 545.0 306 100.0
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.8e-120 436.4 265 96.6
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.8e-120 436.4 265 87.9
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.8e-104 383.3 204 92.6
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.8e-81 306.2 168 91.1
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 6.9e-80 301.6 219 70.8
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 9.0e-80 301.2 214 71.5
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.3e-78 297.4 211 71.6
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 1.7e-78 297.0 219 69.4
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 2.9e-78 296.2 216 71.3
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 6.4e-78 295.0 219 68.9
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 2.4e-77 293.1 207 71.0
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.2e-77 292.7 213 70.4
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 7.1e-77 291.6 217 69.6
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.1e-76 290.0 219 68.9
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.1e-76 290.0 219 68.9
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.7e-76 289.7 213 70.0
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.8e-75 287.0 243 62.6
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.8e-75 287.0 214 70.6
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 3.0e-75 286.2 217 66.8
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 8.7e-75 284.6 217 67.7
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.5e-74 283.9 217 68.2
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 2.5e-74 283.1 221 65.2
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.5e-74 283.1 221 65.2
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 9.6e-74 281.2 233 64.8
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 2.1e-73 280.0 217 66.4
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.8e-73 279.6 221 64.3
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 2.8e-73 279.6 216 67.1
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 3.7e-73 279.3 212 67.5
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 6.2e-73 278.5 215 67.4
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.1e-72 277.7 214 65.9
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 1.1e-72 277.7 215 67.9
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 3.1e-72 276.2 217 65.0
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 4.0e-72 275.8 217 65.4
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.3e-72 275.4 221 63.3
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 6.9e-72 275.0 212 67.9
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.0e-72 274.6 221 63.3
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 1.2e-71 274.2 214 66.8
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 1.5e-71 273.9 220 65.9
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 2.6e-71 273.1 214 66.8
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 1.7e-70 270.4 215 66.0
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 2.2e-70 270.0 216 63.9
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.2e-70 270.0 221 65.6
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 2.2e-70 270.0 216 66.2
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 3.8e-70 269.2 219 63.9
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 4.9e-70 268.9 214 67.8
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 6.4e-70 268.5 217 65.4
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 6.4e-70 268.5 204 69.6
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.4e-69 267.3 229 59.8
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 1.4e-69 267.3 231 62.3
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 3.2e-69 266.2 226 64.2
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 3.2e-69 266.2 213 66.2
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 3.2e-69 266.2 204 68.6
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 3.2e-69 266.2 220 62.7
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.2e-69 265.8 215 67.9
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 4.2e-69 265.8 217 65.0
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 4.2e-69 265.8 212 65.6
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 7.1e-69 265.0 213 64.3
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 7.1e-69 265.0 213 65.3
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 7.1e-69 265.0 215 66.0
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 9.3e-69 264.6 211 64.5
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.2e-68 264.2 223 63.7
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.6e-68 263.8 218 62.8
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 2.1e-68 263.5 216 63.4
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 2.7e-68 263.1 223 63.7
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 4.6e-68 262.3 217 64.1
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 1.0e-67 261.2 217 64.1
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.0e-67 261.2 222 62.6
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 2.3e-67 260.0 217 62.2
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 5.1e-67 258.8 213 62.4
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 5.1e-67 258.8 213 62.4
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 5.1e-67 258.8 227 58.6
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 6.7e-67 258.5 213 62.0
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 8.7e-67 258.1 219 59.8
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 1.1e-66 257.7 213 62.0
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.5e-66 256.5 213 60.6
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.3e-66 255.8 214 63.6
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 5.7e-66 255.4 213 62.4
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 5.7e-66 255.4 213 62.4
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 5.7e-66 255.4 213 62.4
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 7.4e-66 255.0 214 63.6
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.3e-65 254.2 223 61.0
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.3e-65 254.2 219 62.6
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.3e-65 254.2 213 61.5
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.6e-65 253.8 213 60.6
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.6e-65 253.8 221 59.3
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 1.6e-65 253.8 213 60.1
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 2.8e-65 253.1 223 61.0
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.8e-65 253.1 307 52.8
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 6.2e-65 251.9 213 60.6
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 6.2e-65 251.9 213 60.6
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.1e-64 251.1 253 53.4
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 2.4e-64 250.0 217 59.9
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 3.1e-64 249.6 226 61.5
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 2.0e-63 246.9 213 61.0
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 5.8e-63 245.4 225 61.8
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 8.4e-62 241.5 214 59.3
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 1.9e-61 240.4 210 60.0
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 1.9e-61 240.4 214 58.9
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 1.3e-57 227.6 206 60.7
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.6e-57 227.3 211 56.4
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 2.4e-56 223.4 242 50.4
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 3.1e-56 223.0 162 68.5
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 3.1e-56 223.0 225 54.2
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 3.4e-55 219.5 167 65.3
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 2.2e-54 216.9 211 58.3
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.8e-51 207.2 167 61.1
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.0e-50 203.8 167 59.9
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 6.3e-49 198.7 156 67.9
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 1.9e-45 187.2 213 49.8
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 7.2e-45 185.3 211 48.8
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 7.2e-45 185.3 219 49.3
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.7e-44 182.6 142 65.5
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 4.7e-44 182.6 215 46.5
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 2.0e-39 167.2 123 72.4
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.1e-37 161.4 216 44.4
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.4e-35 154.5 119 66.4
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 5.3e-32 142.5 143 53.8
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 9.1e-32 141.7 139 54.7
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 3.6e-28 129.8 146 47.9
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.3e-25 121.3 99 58.6
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 8.8e-19 98.6 61 77.0
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.6e-12 77.8 66 60.6
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 2.1e-12 77.4 79 50.6
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 3.6e-12 76.6 213 32.4
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 3.0e-11 73.6 57 56.1
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.9e-11 72.0 93 47.3
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 2.9e-09 67.0 184 28.3
Peaxi162Scf00151g00817 Petunia axillaris HOM05D005286 ORTHO05D006348 2.9e-06 57.0 43 67.4


User provided reference genes

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