Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 2.0e-77 292.4 149 100.0
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 3.6e-58 228.4 138 84.8
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.6e-56 222.2 129 86.8
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 2.6e-56 222.2 126 88.9
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 5.7e-56 221.1 125 88.8
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 5.7e-56 221.1 125 88.8
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 2.9e-55 218.8 125 86.4
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.1e-54 216.9 125 85.6
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.1e-54 216.9 128 86.7
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 1.8e-54 216.1 126 84.9
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 2.4e-54 215.7 125 85.6
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.4e-54 215.7 125 84.0
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 3.2e-54 215.3 125 84.8
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 3.2e-54 215.3 124 86.3
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 3.2e-54 215.3 125 85.6
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 5.4e-54 214.5 129 86.0
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 5.4e-54 214.5 129 84.5
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 5.4e-54 214.5 121 89.3
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.0e-54 214.2 126 84.1
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 9.2e-54 213.8 125 85.6
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 9.2e-54 213.8 128 82.8
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.2e-53 213.4 124 86.3
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.2e-53 213.4 129 83.7
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 1.6e-53 213.0 128 83.6
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.6e-53 213.0 129 85.3
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 1.6e-53 213.0 126 85.7
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 2.0e-53 212.6 122 86.1
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 3.5e-53 211.8 121 86.8
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 4.6e-53 211.5 118 89.8
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 4.6e-53 211.5 119 88.2
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 4.6e-53 211.5 118 90.7
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.8e-53 210.7 126 81.7
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 7.8e-53 210.7 120 87.5
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.8e-53 210.7 125 83.2
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.0e-52 210.3 118 89.0
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 1.0e-52 210.3 125 84.0
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.3e-52 209.9 118 88.1
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 1.3e-52 209.9 120 84.2
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.3e-52 209.1 122 83.6
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 2.3e-52 209.1 127 85.8
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 3.9e-52 208.4 122 86.1
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.9e-52 208.4 121 86.0
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 5.0e-52 208.0 126 82.5
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.6e-52 207.6 125 82.4
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.1e-51 206.8 125 81.6
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 3.3e-51 205.3 126 78.6
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.3e-51 205.3 126 82.5
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 4.3e-51 204.9 124 83.9
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 4.3e-51 204.9 125 84.8
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 4.3e-51 204.9 119 84.9
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 4.3e-51 204.9 129 80.6
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 5.6e-51 204.5 118 84.7
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.3e-51 204.1 125 81.6
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 9.5e-51 203.8 119 86.6
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.6e-50 203.0 126 81.7
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 3.6e-50 201.8 125 83.2
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 4.7e-50 201.4 125 82.4
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 4.7e-50 201.4 131 77.9
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 1.1e-49 200.3 119 81.5
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-49 200.3 125 82.4
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.8e-49 199.5 119 80.7
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.8e-49 199.5 122 81.1
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.8e-49 199.5 128 79.7
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.8e-49 199.5 119 82.4
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 2.3e-49 199.1 119 81.5
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 2.3e-49 199.1 119 81.5
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 2.3e-49 199.1 119 81.5
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.3e-49 199.1 126 78.6
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 3.1e-49 198.7 119 81.5
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 3.1e-49 198.7 119 81.5
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 4.0e-49 198.4 117 82.9
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 4.0e-49 198.4 125 79.2
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 8.9e-49 197.2 126 77.0
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 8.9e-49 197.2 120 81.7
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 2.0e-48 196.1 119 79.8
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.0e-48 196.1 127 78.0
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.0e-48 196.1 123 79.7
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 2.6e-48 195.7 127 75.6
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.4e-48 195.3 106 93.4
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 3.4e-48 195.3 116 81.9
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 3.4e-48 195.3 124 76.6
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 4.4e-48 194.9 115 82.6
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 5.8e-48 194.5 125 76.0
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 9.8e-48 193.7 118 82.2
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 1.3e-47 193.4 116 80.2
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-47 193.4 125 79.2
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.3e-47 193.4 127 76.4
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.3e-47 193.4 119 80.7
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.7e-47 193.0 119 80.7
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 2.9e-47 192.2 114 82.5
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.1e-46 190.3 125 76.8
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 2.4e-46 189.1 119 78.2
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 2.4e-46 189.1 117 76.9
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 2.4e-46 189.1 117 76.9
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 4.1e-46 188.3 108 89.8
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 4.1e-46 188.3 123 78.9
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 5.4e-46 188.0 117 76.9
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 7.0e-46 187.6 107 85.0
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 9.2e-46 187.2 117 76.9
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 3.5e-45 185.3 117 78.6
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.9e-44 181.8 121 76.9
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 8.6e-44 180.6 123 71.5
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 2.5e-43 179.1 121 75.2
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 4.3e-43 178.3 122 75.4
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 9.5e-43 177.2 119 76.5
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 9.5e-43 177.2 118 75.4
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.8e-42 175.6 99 89.9
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 3.6e-42 175.3 103 83.5
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 3.6e-42 175.3 125 72.8
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 3.1e-41 172.2 99 86.9
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 6.8e-41 171.0 117 74.4
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.2e-40 170.2 99 87.9
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 2.0e-40 169.5 98 85.7
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.9e-39 165.6 99 80.8
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.1e-38 163.7 90 88.9
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 1.4e-38 163.3 121 70.2
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.2e-37 160.2 129 67.4
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.6e-37 159.8 120 70.8
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.6e-37 159.8 121 69.4
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.0e-36 155.6 108 72.2
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 3.9e-36 155.2 117 69.2
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 6.6e-36 154.5 125 65.6
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 8.6e-36 154.1 95 82.1
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.9e-35 152.9 112 70.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.9e-35 152.9 112 70.5
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.6e-34 149.8 108 71.3
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.1e-34 149.4 86 88.4
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 3.1e-33 145.6 116 58.6
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 4.0e-33 145.2 100 75.0
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.5e-32 143.3 85 80.0
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 4.9e-31 138.3 107 65.4
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 8.4e-31 137.5 79 81.0
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.4e-30 136.7 88 76.1
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.1e-30 135.2 118 62.7
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 5.4e-30 134.8 102 68.6
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 2.7e-29 132.5 113 58.4
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.7e-28 129.8 88 69.3
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 6.6e-28 127.9 124 49.2
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 6.6e-28 127.9 116 59.5
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.1e-27 127.1 125 58.4
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.9e-27 126.3 118 54.2
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 3.3e-27 125.6 85 76.5
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 2.1e-26 122.9 114 53.5
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 2.8e-26 122.5 123 52.0
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.4e-25 120.2 114 51.8
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 1.8e-25 119.8 115 56.5
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.1e-25 119.0 118 53.4
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 5.2e-25 118.2 114 51.8
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.2e-24 117.1 131 48.9
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.7e-23 113.2 102 55.9
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.9e-23 112.5 129 47.3
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.9e-23 111.7 77 79.2
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 1.0e-20 104.0 61 82.0
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.0e-20 104.0 62 82.3
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.1e-11 73.9 59 52.5
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 1.1e-09 67.4 75 49.3
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.5e-08 63.5 72 48.6
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 1.1e-06 57.4 111 34.2
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 1.4e-06 57.0 111 33.3
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 1.9e-06 56.6 111 31.5
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 3.2e-06 55.8 111 32.4
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 4.2e-06 55.5 111 32.4
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 4.2e-06 55.5 111 32.4
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 4.2e-06 55.5 111 35.1
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 4.2e-06 55.5 111 32.4
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 5.5e-06 55.1 111 31.5
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 7.1e-06 54.7 111 30.6
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 7.1e-06 54.7 111 30.6


User provided reference genes

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