Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038739 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 2.9e-265 917.9 433 100.0
CSS0001355 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 5.7e-221 770.8 431 83.3
CSS0036117 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 5.7e-221 770.8 431 83.3
Rhsim04G0027900 Rhododendron simsii HOM05D006015 ORTHO05D007816 1.9e-216 755.7 431 81.9
Rhsim06G0176400 Rhododendron simsii HOM05D006015 ORTHO05D007816 5.7e-213 744.2 433 80.4
Dinv26607 Davidia involucrata HOM05D006015 ORTHO05D007816 9.1e-211 736.9 432 79.2
Actinidia07868 Actinidia chinensis HOM05D006015 ORTHO05D007816 1.1e-203 713.4 432 78.7
Cc08_g02360 Coffea canephora HOM05D006015 ORTHO05D007816 3.0e-198 695.3 427 74.2
CiPaw.04G196900 Carya illinoinensis HOM05D006015 ORTHO05D007816 5.3e-195 684.5 425 75.5
Duzib138G1954 Durio zibethinus HOM05D006015 ORTHO05D007816 5.3e-195 684.5 426 75.4
COL.COLO4_33334 Corchorus olitorius HOM05D006015 ORTHO05D007816 7.0e-195 684.1 425 75.5
Oeu064356.1 Olea europaea HOM05D006015 ORTHO05D007816 1.2e-194 683.3 422 75.1
DCAR_019683 Daucus carota HOM05D006015 ORTHO05D007816 2.0e-194 682.6 428 74.3
Cfa014228 Carpinus fangiana HOM05D006015 ORTHO05D007816 2.6e-194 682.2 421 76.2
Gohir.D11G156100 Gossypium hirsutum HOM05D006015 ORTHO05D007816 2.6e-194 682.2 425 74.8
Gohir.A11G149000 Gossypium hirsutum HOM05D006015 ORTHO05D007816 3.5e-194 681.8 425 74.6
Thecc.01G195800 Theobroma cacao HOM05D006015 ORTHO05D007816 1.7e-193 679.5 425 74.8
Duzib211G0350 Durio zibethinus HOM05D006015 ORTHO05D007816 6.5e-193 677.6 425 74.4
MD17G1116800 Malus domestica HOM05D006015 ORTHO05D007816 1.5e-192 676.4 426 73.5
Gorai.007G166200 Gossypium raimondii HOM05D006015 ORTHO05D007816 1.9e-192 676.0 425 74.1
FAN09G3933 Fragaria x ananassa HOM05D006015 ORTHO05D007816 1.6e-191 672.9 423 72.6
MD09G1126500 Malus domestica HOM05D006015 ORTHO05D007816 8.0e-191 670.6 426 73.2
FAN02G2834 Fragaria x ananassa HOM05D006015 ORTHO05D007816 1.4e-190 669.8 423 72.1
QL04p068533 Quercus lobata HOM05D006015 ORTHO05D007816 1.4e-190 669.8 425 74.6
Nn3g19725 Nelumbo nucifera HOM05D006015 ORTHO05D007816 1.8e-190 669.5 432 71.5
Peaxi162Scf00802g00022 Petunia axillaris HOM05D006015 ORTHO05D007816 3.0e-190 668.7 428 73.4
Potri.014G167200 Populus trichocarpa HOM05D006015 ORTHO05D007816 4.0e-190 668.3 433 74.1
FAN14G1195 Fragaria x ananassa HOM05D006015 ORTHO05D007816 5.2e-190 667.9 423 71.9
Aqoxy1G04250 Aquilegia oxysepala HOM05D006015 ORTHO05D007816 6.7e-190 667.5 432 73.1
FvH4_6g40640 Fragaria vesca HOM05D006015 ORTHO05D007816 1.2e-189 666.8 423 71.6
HanXRQChr11g0329021 Helianthus annuus HOM05D006015 ORTHO05D007816 1.2e-189 666.8 430 71.9
Nitab4.5_0001867g0080 Nicotiana tabacum HOM05D006015 ORTHO05D007816 1.5e-189 666.4 428 72.9
FAN05G5154 Fragaria x ananassa HOM05D006015 ORTHO05D007816 2.6e-189 665.6 423 71.9
Gorai.001G221700 Gossypium raimondii HOM05D006015 ORTHO05D007816 3.3e-189 665.2 426 73.2
PGR083G2314 Punica granatum HOM05D006015 ORTHO05D007816 3.3e-189 665.2 425 73.9
Migut.K00073 Erythranthe guttata HOM05D006015 ORTHO05D007816 7.5e-189 664.1 426 72.3
Manes.12G065800 Manihot esculenta HOM05D006015 ORTHO05D007816 1.3e-188 663.3 425 73.2
Sabra14G0127200 Salix brachista HOM05D006015 ORTHO05D007816 1.3e-188 663.3 426 74.6
Gohir.D07G198100 Gossypium hirsutum HOM05D006015 ORTHO05D007816 2.8e-188 662.1 426 73.0
Nitab4.5_0001701g0190 Nicotiana tabacum HOM05D006015 ORTHO05D007816 2.8e-188 662.1 420 73.1
RcHm_v2.0_Chr2g0156011 Rosa chinensis HOM05D006015 ORTHO05D007816 2.8e-188 662.1 422 70.9
Lj6g0021297 Lotus japonicus HOM05D006015 ORTHO05D007816 8.3e-188 660.6 430 71.4
Sc21g0000520 Simmondsia chinensis HOM05D006015 ORTHO05D007816 1.1e-187 660.2 424 71.7
vmacro12084 Vaccinium macrocarpon HOM05D006015 ORTHO05D007816 1.1e-187 660.2 353 84.4
MSTRG.10825 Avicennia marina HOM05D006015 ORTHO05D007816 2.4e-187 659.1 421 73.2
TAR629G2010 Trochodendron aralioides HOM05D006015 ORTHO05D007816 3.1e-187 658.7 427 71.9
Lalb_Chr03g0036841 Lupinus albus HOM05D006015 ORTHO05D007816 4.1e-187 658.3 433 70.7
Sopen07g024010 Solanum pennellii HOM05D006015 ORTHO05D007816 5.3e-187 657.9 427 71.2
PGSC0003DMG400017397 Solanum tuberosum HOM05D006015 ORTHO05D007816 7.0e-187 657.5 427 71.7
Ciclev10015287m.g Citrus clementina HOM05D006015 ORTHO05D007816 9.1e-187 657.1 432 72.5
Hma1.2p1_0545F.1_g175930 Hydrangea macrophylla HOM05D006015 ORTHO05D007816 1.6e-186 656.4 368 79.9
Eucgr.H00879 Eucalyptus grandis HOM05D006015 ORTHO05D007816 2.7e-186 655.6 424 72.4
Solyc07g045470.3 Solanum lycopersicum HOM05D006015 ORTHO05D007816 4.5e-186 654.8 427 70.5
Glyma.10G128800 Glycine max HOM05D006015 ORTHO05D007816 5.9e-186 654.4 434 69.8
Lalb_Chr01g0011281 Lupinus albus HOM05D006015 ORTHO05D007816 5.9e-186 654.4 435 71.3
PSO302G0043 Papaver somniferum HOM05D006015 ORTHO05D007816 5.9e-186 654.4 431 70.1
ECA236G0403 Erigeron canadensis HOM05D006015 ORTHO05D007816 1.0e-185 653.7 434 70.3
Ca_25000_v3 Cicer arietinum L. HOM05D006015 ORTHO05D007816 1.3e-185 653.3 435 70.6
Ca_30801_v3 Cicer arietinum L. HOM05D006015 ORTHO05D007816 1.3e-185 653.3 435 70.6
Psat6g109000 Pisum sativum HOM05D006015 ORTHO05D007816 1.7e-185 652.9 440 71.1
TWI18G0302 Tripterygium wilfordii HOM05D006015 ORTHO05D007816 1.7e-185 652.9 426 72.8
CAN.G177.8 Capsicum annuum HOM05D006015 ORTHO05D007816 2.2e-185 652.5 424 71.5
Lsat_1_v5_gn_7_96920 Lactuca sativa HOM05D006015 ORTHO05D007816 2.2e-185 652.5 428 70.6
VMungo0720G1520 Vigna mungo HOM05D006015 ORTHO05D007816 2.2e-185 652.5 426 70.9
Cpa.g.sc136.28 Carica papaya HOM05D006015 ORTHO05D007816 3.8e-185 651.7 427 70.3
CANSAT64G2535 Cannabis sativa HOM05D006015 ORTHO05D007816 8.5e-185 650.6 424 71.7
TPR.G23976 Trifolium pratense HOM05D006015 ORTHO05D007816 8.5e-185 650.6 434 70.0
Medtr1g046210 Medicago truncatula HOM05D006015 ORTHO05D007816 1.1e-184 650.2 433 69.5
PSO210G7679 Papaver somniferum HOM05D006015 ORTHO05D007816 7.2e-184 647.5 427 69.8
TWI75G1720 Tripterygium wilfordii HOM05D006015 ORTHO05D007816 4.7e-183 644.8 426 72.1
THA.LOC104808847 Tarenaya hassleriana HOM05D006015 ORTHO05D007816 8.0e-183 644.0 429 69.5
Phvul.007G239000 Phaseolus vulgaris HOM05D006015 ORTHO05D007816 1.0e-182 643.7 426 70.4
Sed0014474 Sechium edule HOM05D006015 ORTHO05D007816 1.0e-182 643.7 425 70.4
MELO3C024194.2 Cucumis melo HOM05D006015 ORTHO05D007816 2.3e-182 642.5 425 70.4
CsaV3_7G002510 Cucumis sativus L. HOM05D006015 ORTHO05D007816 6.3e-180 634.4 425 69.9
MBI16_g07770_MAGBIO Magnolia biondii HOM05D006015 ORTHO05D007816 6.3e-180 634.4 429 69.2
MSTRG.6445 Avicennia marina HOM05D006015 ORTHO05D007816 2.4e-179 632.5 430 69.5
Atru.chr6.3393 Acer truncatum HOM05D006015 ORTHO05D007816 1.2e-178 630.2 421 70.1
ClCG02G002870 Citrullus lanatus HOM05D006015 ORTHO05D007816 5.9e-178 627.9 424 69.8
AUR62029116 Chenopodium quinoa HOM05D006015 ORTHO05D007816 1.7e-177 626.3 425 67.8
Actinidia18833 Actinidia chinensis HOM05D006015 ORTHO05D007816 2.3e-177 625.9 427 70.0
Lj1P796T26 Lonicera japonica HOM05D006015 ORTHO05D007816 5.0e-177 624.8 342 81.6
ATR0827G116 Amborella trichopoda HOM05D006015 ORTHO05D007816 1.6e-175 619.8 433 67.4
Sed0012767 Sechium edule HOM05D006015 ORTHO05D007816 4.7e-175 618.2 424 68.4
Gohir.A07G191800 Gossypium hirsutum HOM05D006015 ORTHO05D007816 4.0e-174 615.1 426 69.5
Sp3g23770 Schrenkiella parvula HOM05D006015 ORTHO05D007816 6.8e-174 614.4 429 66.2
BcaB08g34500 Brassica carinata HOM05D006015 ORTHO05D007816 2.6e-173 612.5 428 67.1
Thhalv10002538m.g Eutrema salsugineum HOM05D006015 ORTHO05D007816 3.7e-172 608.6 424 67.0
Carub.0003s2938 Capsella rubella HOM05D006015 ORTHO05D007816 4.9e-172 608.2 424 67.0
BcaC01g03165 Brassica carinata HOM05D006015 ORTHO05D007816 8.3e-172 607.4 428 67.1
BolC3t17819H Brassica oleracea HOM05D006015 ORTHO05D007816 1.4e-171 606.7 428 67.1
Atru.BG.41.p Acer truncatum HOM05D006015 ORTHO05D007816 7.0e-171 604.4 355 76.1
C03p55440 Brassica napus HOM05D006015 ORTHO05D007816 9.2e-171 604.0 428 66.6
AT2G05320 Arabidopsis thaliana HOM05D006015 ORTHO05D007816 5.9e-170 601.3 422 66.8
Lj8P135T89 Lonicera japonica HOM05D006015 ORTHO05D007816 5.9e-170 601.3 338 78.7
Aa31LG8G11520 Aethionema arabicum HOM05D006015 ORTHO05D007816 1.3e-169 600.1 421 67.0
AL3G42830 Arabidopsis lyrata HOM05D006015 ORTHO05D007816 1.3e-169 600.1 420 66.7
A03p44610 Brassica napus HOM05D006015 ORTHO05D007816 2.3e-169 599.4 425 66.6
BraA03t13594Z Brassica rapa HOM05D006015 ORTHO05D007816 2.3e-169 599.4 425 66.6
SGA_v2.0_scaffold94G28455 Striga asiatica HOM05D003478 ORTHO05D004196 2.3e-169 599.4 429 66.9
Ah.01g002640 Amaranthus hybridus HOM05D006015 ORTHO05D007816 1.9e-168 596.3 395 68.9
CARHR103100 Cardamine hirsuta HOM05D006015 ORTHO05D007816 1.6e-167 593.2 352 75.9
CDE05G3376 Ceratophyllum demersum HOM05D006015 ORTHO05D007816 2.1e-167 592.8 423 65.7
unitig_37.g12711 Utricularia gibba HOM05D006015 ORTHO05D007816 5.2e-166 588.2 427 63.9
Nn1g02851 Nelumbo nucifera HOM05D006015 ORTHO05D007816 7.5e-165 584.3 426 65.0
Os02g0798100 Oryza sativa ssp. japonica HOM05D006015 ORTHO05D007816 1.9e-163 579.7 383 67.9
AUR62015007 Chenopodium quinoa HOM05D006015 ORTHO05D007816 5.4e-163 578.2 403 67.0
HPP92_001839 Vanilla planifolia HOM05D006015 ORTHO05D007816 6.0e-162 574.7 356 71.6
Migut.J01779 Erythranthe guttata HOM05D006015 ORTHO05D007816 2.5e-160 569.3 425 62.8
SEGI_05803 Sequoiadendron giganteum HOM05D006015 ORTHO05D007816 4.3e-160 568.5 385 67.3
Zm00001eb192260 Zea mays HOM05D006015 ORTHO05D007816 4.7e-159 565.1 362 69.1
SHI10157 Sapria himalayana HOM05D006015 ORTHO05D007816 1.1e-155 553.9 356 69.9
Prupe.3G198000 Prunus persica HOM05D006015 ORTHO05D007816 4.1e-147 525.4 282 81.2
Glyma.20G080200 Glycine max HOM05D006015 ORTHO05D007816 1.1e-142 510.8 289 76.8
Pp3c12_25130 Physcomitrium patens HOM05D006015 ORTHO05D007816 2.4e-139 499.6 370 63.0
SMO358G0350 Selaginella moellendorffii HOM05D006015 ORTHO05D007816 2.7e-138 496.1 354 62.7
Pp3c8_6700 Physcomitrium patens HOM05D006015 ORTHO05D007816 6.2e-135 485.0 357 61.3
Mapoly0086s0006 Marchantia polymorpha HOM05D006015 ORTHO05D007816 8.7e-129 464.5 364 60.2
SalBow1G4868 Salvia bowleyana HOM05D006015 ORTHO05D007816 4.5e-117 425.6 322 64.0
Hma1.2p1_0545F.1_g175940 Hydrangea macrophylla HOM05D006015 ORTHO05D007816 5.3e-110 402.1 211 83.4
SalBow6G1876 Salvia bowleyana HOM05D006015 ORTHO05D007816 9.7e-104 381.3 217 77.0
MSTRG.26113 Avicennia marina HOM05D006015 ORTHO05D007816 9.0e-102 374.8 209 78.0
AagrBONN_evm.TU.Sc2ySwM_368.1590 Anthoceros agrestis HOM05D006015 ORTHO05D007816 4.2e-99 365.9 424 48.1
CBR_g52107 Chara braunii HOM05D006015 ORTHO05D000002 7.2e-91 338.6 314 52.2
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 2.2e-63 247.3 231 56.3
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 4.9e-55 219.5 373 38.9
Nn5g28971 Nelumbo nucifera HOM05D006015 ORTHO05D007816 1.9e-30 137.9 102 57.8
Actinidia35205 Actinidia chinensis HOM05D001060 ORTHO05D000905 6.6e-28 129.4 198 38.4
EL10Ac8g18725 Beta vulgaris HOM05D006015 ORTHO05D007816 2.4e-25 120.9 80 62.5
Aa31LG8G11540 Aethionema arabicum HOM05D006015 ORTHO05D007816 4.3e-19 100.1 124 45.2
CSS0018959 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D112597 3.2e-14 84.0 58 69.0
Aa31LG8G11530 Aethionema arabicum HOM05D006015 ORTHO05D059074 9.3e-06 55.8 77 42.9


User provided reference genes

Program Settings