Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 0.0e+00 1299.3 675 100.0
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 2.2e-235 819.3 651 67.6
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 3.2e-194 682.6 659 58.4
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 4.9e-187 658.7 657 56.8
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 6.5e-147 525.4 648 49.7
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 1.6e-142 510.8 627 49.0
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 1.4e-138 497.7 650 47.1
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 3.9e-136 489.6 665 47.5
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 6.1e-129 465.7 664 45.2
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 8.8e-128 461.8 651 46.1
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 1.0e-123 448.4 646 44.3
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 5.5e-122 442.6 617 46.4
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 1.4e-120 438.0 656 43.3
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 3.9e-120 436.4 668 43.4
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 5.7e-119 432.6 605 44.6
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 3.7e-118 429.9 665 43.8
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 3.1e-117 426.8 599 44.1
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 4.1e-117 426.4 625 44.2
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 7.0e-117 425.6 657 43.2
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 4.5e-116 422.9 645 42.0
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 5.9e-116 422.5 695 40.7
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 2.2e-115 420.6 700 40.7
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 6.5e-115 419.1 618 44.7
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 8.5e-115 418.7 647 41.7
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 1.1e-114 418.3 679 41.1
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 1.9e-114 417.5 645 41.9
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 3.2e-114 416.8 608 43.3
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 7.2e-114 415.6 543 47.1
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 8.8e-112 408.7 583 44.8
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 8.8e-112 408.7 492 47.4
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 7.5e-111 405.6 647 41.4
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 1.4e-109 401.4 545 45.7
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.4e-109 401.4 670 40.0
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 5.9e-108 396.0 650 42.5
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 1.3e-107 394.8 542 43.5
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 6.5e-107 392.5 714 38.1
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 8.5e-107 392.1 640 43.6
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 2.5e-106 390.6 656 40.2
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 4.7e-105 386.3 566 44.7
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 8.8e-104 382.1 568 45.1
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 1.2e-103 381.7 583 43.2
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 2.0e-103 380.9 530 43.2
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 7.5e-103 379.0 543 45.3
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 1.7e-102 377.9 546 44.1
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 1.7e-102 377.9 638 39.7
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 2.8e-102 377.1 574 44.8
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 4.8e-102 376.3 645 42.0
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 1.4e-101 374.8 592 41.2
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 7.0e-101 372.5 671 38.0
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 2.7e-100 370.5 572 43.9
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 6.5e-99 365.9 283 66.1
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 6.5e-99 365.9 578 41.0
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 5.5e-98 362.8 564 41.5
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 3.6e-97 360.1 622 40.2
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 6.8e-96 355.9 618 40.6
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 2.2e-94 350.9 611 38.8
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 4.1e-93 346.7 644 37.1
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 1.7e-91 341.3 522 41.2
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 2.9e-91 340.5 601 39.8
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 1.9e-90 337.8 622 38.3
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.4e-88 331.6 641 38.7
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 2.2e-86 324.3 641 35.3
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 2.9e-86 323.9 699 36.9
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 3.7e-86 323.6 699 36.8
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 1.8e-85 321.2 648 37.0
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 2.4e-85 320.9 533 40.9
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 1.2e-84 318.5 646 37.5
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 4.6e-84 316.6 654 39.0
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 3.0e-83 313.9 604 38.4
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 3.9e-83 313.5 606 37.5
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 5.0e-83 313.2 714 36.0
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 5.0e-83 313.2 582 37.5
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 6.6e-83 312.8 683 36.5
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 2.8e-81 307.4 572 39.5
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 3.6e-81 307.0 664 37.2
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 2.3e-80 304.3 680 34.9
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 6.8e-80 302.8 564 37.8
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 6.8e-80 302.8 637 35.6
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 1.9e-74 284.6 557 36.3
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 1.9e-74 284.6 672 34.5
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 1.9e-74 284.6 703 34.1
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 1.3e-70 271.9 540 35.6
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 2.4e-69 267.7 633 34.4
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 2.4e-69 267.7 571 36.8
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 9.2e-69 265.8 582 35.6
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 3.9e-67 260.4 506 38.9
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 6.6e-67 259.6 681 32.6
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 1.1e-66 258.8 659 33.2
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 1.1e-66 258.8 659 33.2
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 1.1e-66 258.8 597 33.7
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 1.5e-66 258.5 618 34.0
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 2.5e-66 257.7 571 35.6
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 7.3e-66 256.1 588 34.5
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 5.2e-64 250.0 588 34.2
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 4.4e-63 246.9 564 34.9
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 8.4e-62 242.7 422 41.5
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 8.7e-59 232.6 600 32.7
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 4.4e-55 220.3 581 30.3
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 1.3e-54 218.8 580 31.0
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 1.5e-50 205.3 553 30.7
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 2.5e-50 204.5 512 32.2
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 5.6e-50 203.4 514 31.5
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 3.6e-49 200.7 528 31.4
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 1.9e-45 188.3 654 29.7
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 2.7e-44 184.5 420 34.8
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 1.5e-42 178.7 376 36.7
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.6e-41 175.3 152 53.9
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 7.4e-34 149.8 206 45.6
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 1.4e-19 102.4 183 39.9
Dinv43435 Davidia involucrata HOM05D001393 ORTHO05D007477 1.3e-14 85.9 108 45.4
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 4.2e-13 80.9 750 20.7
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 2.8e-09 68.2 99 38.4
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 2.8e-09 68.2 99 38.4
SEGI_24281 Sequoiadendron giganteum HOM05D000890 ORTHO05D007477 1.5e-07 62.4 503 21.9
Mapoly0003s0122 Marchantia polymorpha HOM05D020720 ORTHO05D007477 2.0e-07 62.0 167 26.9
FvH4_5g06191 Fragaria vesca HOM05D001393 ORTHO05D007477 7.7e-07 60.1 59 50.8


User provided reference genes

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