Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038712 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 2.4e-227 792.0 431 100.0
Actinidia37880 Actinidia chinensis HOM05D006326 ORTHO05D007589 3.8e-100 369.4 359 66.6
Actinidia17957 Actinidia chinensis HOM05D006326 ORTHO05D007589 5.0e-92 342.4 359 63.8
CSS0039389 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 6.7e-89 332.0 358 62.8
GSVIVG01033643001 Vitis vinifera HOM05D006326 ORTHO05D007589 2.1e-82 310.5 365 55.9
Dinv05303 Davidia involucrata HOM05D006326 ORTHO05D007589 1.0e-73 281.6 362 57.2
Dinv07946 Davidia involucrata HOM05D006326 ORTHO05D007589 2.8e-71 273.5 362 54.4
Atru.chr1.1394 Acer truncatum HOM05D006326 ORTHO05D007589 1.6e-66 257.7 363 49.0
Dinv01681 Davidia involucrata HOM05D006326 ORTHO05D007589 9.7e-64 248.4 360 52.2
Haze_20235 Corylus avellana HOM05D006326 ORTHO05D007589 2.0e-56 224.2 374 48.7
CiPaw.09G048500 Carya illinoinensis HOM05D006326 ORTHO05D007589 1.7e-52 211.1 364 46.7
Nn7g36809 Nelumbo nucifera HOM05D006326 ORTHO05D007589 8.0e-50 202.2 386 41.2
Duzib128G1973 Durio zibethinus HOM05D006326 ORTHO05D007589 8.8e-49 198.7 342 45.9
Prupe.7G034100 Prunus persica HOM05D006326 ORTHO05D007589 2.2e-47 194.1 393 42.2
MD14G1089900 Malus domestica HOM05D006326 ORTHO05D007589 8.3e-47 192.2 365 44.1
Thecc.05G128800 Theobroma cacao HOM05D006326 ORTHO05D007589 1.4e-46 191.4 362 44.5
CiPaw.10G040500 Carya illinoinensis HOM05D006326 ORTHO05D007589 3.5e-45 186.8 362 45.0
TAR623G0088 Trochodendron aralioides HOM05D006326 ORTHO05D007589 3.8e-44 183.3 382 41.4
Manes.09G004100 Manihot esculenta HOM05D006326 ORTHO05D007589 5.0e-44 183.0 368 43.2
RcHm_v2.0_Chr6g0276151 Rosa chinensis HOM05D006326 ORTHO05D007589 1.1e-43 181.8 363 43.5
QL07p011201 Quercus lobata HOM05D006326 ORTHO05D007589 7.2e-43 179.1 287 48.1
Potri.016G036000 Populus trichocarpa HOM05D006326 ORTHO05D007589 6.8e-41 172.6 359 41.5
CsaV3_4G029490 Cucumis sativus L. HOM05D006326 ORTHO05D007589 2.9e-39 167.2 360 41.4
Rhsim03G0036800 Rhododendron simsii HOM05D006326 ORTHO05D007589 1.4e-38 164.9 358 40.5
COL.COLO4_37458 Corchorus olitorius HOM05D006326 ORTHO05D007589 1.0e-36 158.7 382 38.7
ClCG04G005630 Citrullus lanatus HOM05D006326 ORTHO05D007589 1.9e-35 154.5 390 40.5
FAN20G2839 Fragaria x ananassa HOM05D006326 ORTHO05D007589 1.2e-34 151.8 363 39.9
Gohir.D09G115200 Gossypium hirsutum HOM05D006326 ORTHO05D007589 2.1e-34 151.0 372 39.8
FvH4_2g14070 Fragaria vesca HOM05D006326 ORTHO05D007589 8.0e-34 149.1 364 39.8
FAN24G3485 Fragaria x ananassa HOM05D006326 ORTHO05D007589 5.2e-33 146.4 364 39.6
CANSAT64G1393 Cannabis sativa HOM05D006326 ORTHO05D007589 2.6e-32 144.1 365 39.2
Glyma.02G166100 Glycine max HOM05D006326 ORTHO05D007589 4.4e-32 143.3 356 38.5
Hma1.2p1_0975F.1_g243130 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 5.8e-32 142.9 302 42.1
Hma1.2p1_0975F.1_g243140 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 5.8e-32 142.9 296 42.2
Gorai.006G132800 Gossypium raimondii HOM05D006326 ORTHO05D007589 2.2e-31 141.0 372 39.0
Ciclev10011438m.g Citrus clementina HOM05D006326 ORTHO05D007589 4.1e-30 136.7 359 37.6
Cpa.g.sc92.89 Carica papaya HOM05D006326 ORTHO05D007589 1.2e-29 135.2 367 38.7
TWI74G0746 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 1.2e-29 135.2 366 38.8
Oeu022970.2 Olea europaea HOM05D006326 ORTHO05D007589 1.6e-29 134.8 369 39.0
Actinidia01832 Actinidia chinensis HOM05D006326 ORTHO05D007589 2.7e-29 134.0 193 47.2
Oeu057785.1 Olea europaea HOM05D006326 ORTHO05D007589 4.6e-29 133.3 361 38.5
FAN15G3215 Fragaria x ananassa HOM05D006326 ORTHO05D007589 1.0e-28 132.1 363 38.0
Oeu057784.1 Olea europaea HOM05D006326 ORTHO05D007589 2.3e-28 131.0 361 38.2
Gohir.A09G118300 Gossypium hirsutum HOM05D006326 ORTHO05D007589 5.0e-28 129.8 373 37.0
Peaxi162Scf00076g00325 Petunia axillaris HOM05D006326 ORTHO05D007589 5.0e-28 129.8 365 36.4
VMungo0720G1800 Vigna mungo HOM05D006326 ORTHO05D007589 5.0e-28 129.8 357 39.2
MELO3C019097.2 Cucumis melo HOM05D006326 ORTHO05D007589 8.1e-26 122.5 360 37.2
Eucgr.B03116 Eucalyptus grandis HOM05D006326 ORTHO05D007589 8.1e-26 122.5 358 34.9
Lj5g0016845 Lotus japonicus HOM05D006326 ORTHO05D007589 8.1e-26 122.5 359 37.9
Hma1.2p1_0252F.1_g102780 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 1.1e-25 122.1 322 42.5
Nitab4.5_0002982g0070 Nicotiana tabacum HOM05D006326 ORTHO05D007589 3.1e-25 120.6 371 35.6
DCAR_013645 Daucus carota HOM05D002003 ORTHO05D002037 4.0e-25 120.2 358 35.5
Aqoxy1G00376 Aquilegia oxysepala HOM05D006326 ORTHO05D007589 2.6e-24 117.5 368 35.3
Ca_05361_v3 Cicer arietinum L. HOM05D006326 ORTHO05D007589 4.4e-24 116.7 357 37.8
Glyma.10G102200 Glycine max HOM05D006326 ORTHO05D007589 1.7e-23 114.8 362 35.4
Nitab4.5_0000237g0060 Nicotiana tabacum HOM05D006326 ORTHO05D007589 2.2e-23 114.4 371 33.4
Cc06_g19610 Coffea canephora HOM05D006326 ORTHO05D007589 3.7e-23 113.6 361 38.8
CAN.G51.3 Capsicum annuum HOM05D006326 ORTHO05D007589 4.1e-22 110.2 366 35.5
vmacro07781 Vaccinium macrocarpon HOM05D006326 ORTHO05D007589 4.1e-22 110.2 357 38.4
Lalb_Chr02g0156611 Lupinus albus HOM05D006326 ORTHO05D007589 5.4e-22 109.8 357 35.6
Sed0018260 Sechium edule HOM05D006326 ORTHO05D007589 9.2e-22 109.0 351 35.9
SalBow6G7225 Salvia bowleyana HOM05D006326 ORTHO05D007589 4.6e-21 106.7 359 35.9
Sopen12g010520 Solanum pennellii HOM05D006326 ORTHO05D007589 7.8e-21 105.9 360 35.3
Potri.006G039900 Populus trichocarpa HOM05D006326 ORTHO05D007589 3.9e-20 103.6 359 33.7
arahy.Tifrunner.gnm1.ann1.Z1KKER Arachis hypogaea HOM05D006326 ORTHO05D007589 1.1e-19 102.1 359 32.6
arahy.Tifrunner.gnm1.ann1.0NJ1V1 Arachis hypogaea HOM05D006326 ORTHO05D007589 1.2e-18 98.6 359 32.9
TWI53G1954 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 8.1e-18 95.9 363 34.2
Sabra06G0026900 Salix brachista HOM05D006326 ORTHO05D007589 4.0e-17 93.6 359 33.7
SabraUnG0002500 Salix brachista HOM05D006326 ORTHO05D007589 4.0e-17 93.6 359 33.7
MSTRG.19798 Avicennia marina HOM05D006326 ORTHO05D007589 9.9e-16 89.0 365 34.5
Phvul.007G233400 Phaseolus vulgaris HOM05D006326 ORTHO05D007589 1.7e-15 88.2 356 33.4
Psat6g129480 Pisum sativum HOM05D006326 ORTHO05D007589 1.7e-15 88.2 359 35.1
ATR0317G072 Amborella trichopoda HOM05D006326 ORTHO05D007589 5.4e-14 83.2 397 30.7
PSO384G3095 Papaver somniferum HOM05D006326 ORTHO05D007589 1.2e-13 82.0 370 31.6
Migut.J01646 Erythranthe guttata HOM05D006326 ORTHO05D007589 1.3e-12 78.6 360 29.7
Sc13g0001090 Simmondsia chinensis HOM05D006326 ORTHO05D007589 3.0e-12 77.4 365 33.2
Solyc12g020000.3 Solanum lycopersicum HOM05D006326 ORTHO05D007589 4.3e-11 73.6 356 34.3
Lsat_1_v5_gn_9_29721 Lactuca sativa HOM05D006326 ORTHO05D007589 9.6e-11 72.4 191 39.8
PSO339G2802 Papaver somniferum HOM05D006326 ORTHO05D007589 2.8e-10 70.9 361 31.0
Hund19089 Selenicereus undatus HOM05D006326 ORTHO05D007589 1.7e-07 61.6 297 35.7
Medtr1g050510 Medicago truncatula HOM05D006326 ORTHO05D007589 4.9e-07 60.1 358 31.0
unitig_60.g25479 Utricularia gibba HOM05D006326 ORTHO05D007589 8.4e-07 59.3 360 29.4
Sp5g05840 Schrenkiella parvula HOM05D006326 ORTHO05D007589 1.1e-06 58.9 362 28.5
Aa31LG10G11560 Aethionema arabicum HOM05D006326 ORTHO05D007589 4.2e-06 57.0 360 28.9


User provided reference genes

Program Settings