Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038700 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 1.1e-27 125.9 67 100.0
CSS0023699 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 1.8e-17 92.0 63 84.1
CSS0025195 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 2.4e-17 91.7 63 82.5
CSS0049047 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 4.0e-17 90.9 63 82.5
CSS0039250 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 9.3e-14 79.7 73 72.6
CSS0040349 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 9.3e-14 79.7 73 72.6
ClCG01G018850 Citrullus lanatus HOM05D001361 ORTHO05D002529 1.2e-13 79.3 63 69.8
vmacro01232 Vaccinium macrocarpon HOM05D001361 ORTHO05D002529 3.5e-13 77.8 63 68.3
MELO3C007764.2 Cucumis melo HOM05D001361 ORTHO05D002529 4.6e-13 77.4 63 66.7
Actinidia08216 Actinidia chinensis HOM05D001361 ORTHO05D002529 1.0e-12 76.3 69 63.8
CsaV3_6G045510 Cucumis sativus L. HOM05D001361 ORTHO05D002529 1.8e-12 75.5 63 65.1
GSVIVG01020065001 Vitis vinifera HOM05D001361 ORTHO05D002529 1.8e-12 75.5 63 66.7
AT1G27000 Arabidopsis thaliana HOM05D001361 ORTHO05D002529 3.9e-12 74.3 63 63.5
Hma1.2p1_0341F.1_g130600 Hydrangea macrophylla HOM05D001361 ORTHO05D002529 6.7e-12 73.6 63 61.9
Carub.0001s2397 Capsella rubella HOM05D001361 ORTHO05D002529 8.7e-12 73.2 63 61.9
CARHR024910 Cardamine hirsuta HOM05D001361 ORTHO05D002529 8.7e-12 73.2 63 61.9
CiPaw.06G081200 Carya illinoinensis HOM05D001361 ORTHO05D002529 8.7e-12 73.2 63 61.9
Sp1g21790 Schrenkiella parvula HOM05D001361 ORTHO05D002529 1.1e-11 72.8 63 61.9
Sed0011652 Sechium edule HOM05D001361 ORTHO05D002529 1.1e-11 72.8 63 61.9
AL1G38520 Arabidopsis lyrata HOM05D001361 ORTHO05D002529 1.5e-11 72.4 63 61.9
Thhalv10008298m.g Eutrema salsugineum HOM05D001361 ORTHO05D002529 1.9e-11 72.0 63 60.3
TWI18G1247 Tripterygium wilfordii HOM05D001361 ORTHO05D002529 2.5e-11 71.6 63 58.7
Aa31LG7G8150 Aethionema arabicum HOM05D001361 ORTHO05D002529 4.3e-11 70.9 63 60.3
Cpa.g.c28586.2 Carica papaya HOM05D001361 ORTHO05D002529 4.3e-11 70.9 63 61.9
Manes.01G189500 Manihot esculenta HOM05D001361 ORTHO05D002529 4.3e-11 70.9 63 58.7
Oeu017067.2 Olea europaea HOM05D001361 ORTHO05D002529 7.4e-11 70.1 63 61.9
Eucgr.B03413 Eucalyptus grandis HOM05D001361 ORTHO05D002529 9.6e-11 69.7 63 58.7
Potri.010G092700 Populus trichocarpa HOM05D001361 ORTHO05D002529 9.6e-11 69.7 63 58.7
A08p27700 Brassica napus HOM05D001361 ORTHO05D002529 1.3e-10 69.3 63 63.5
C08p22610 Brassica napus HOM05D001361 ORTHO05D002529 1.3e-10 69.3 63 63.5
BolC8t49899H Brassica oleracea HOM05D001361 ORTHO05D002529 1.3e-10 69.3 63 63.5
Dinv43649 Davidia involucrata HOM05D001361 ORTHO05D002529 1.3e-10 69.3 63 58.7
Cfa009024 Carpinus fangiana HOM05D001361 ORTHO05D002529 1.6e-10 68.9 65 60.0
Phvul.002G065900 Phaseolus vulgaris HOM05D001361 ORTHO05D002529 1.6e-10 68.9 63 54.0
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 2.1e-10 68.6 63 63.5
QL03p065510 Quercus lobata HOM05D001361 ORTHO05D002529 2.1e-10 68.6 63 63.5
Dinv44088 Davidia involucrata HOM05D001361 ORTHO05D002529 2.8e-10 68.2 63 57.1
PGR119G1577 Punica granatum HOM05D001361 ORTHO05D002529 2.8e-10 68.2 63 58.7
Psat2g144360 Pisum sativum HOM05D001361 ORTHO05D002529 3.7e-10 67.8 63 54.0
Haze_12055 Corylus avellana HOM05D001361 ORTHO05D002529 6.2e-10 67.0 63 60.3
CiPaw.05G139100 Carya illinoinensis HOM05D001361 ORTHO05D002529 8.2e-10 66.6 63 58.7
Migut.A01170 Erythranthe guttata HOM05D001361 ORTHO05D002529 8.2e-10 66.6 63 60.3
Manes.05G097501 Manihot esculenta HOM05D001361 ORTHO05D002529 8.2e-10 66.6 63 55.6
arahy.Tifrunner.gnm1.ann1.KTR52G Arachis hypogaea HOM05D001361 ORTHO05D002529 1.1e-09 66.2 63 54.0
arahy.Tifrunner.gnm1.ann1.MZWE21 Arachis hypogaea HOM05D001361 ORTHO05D002529 1.1e-09 66.2 63 54.0
arahy.Tifrunner.gnm1.ann1.PUF87X Arachis hypogaea HOM05D001361 ORTHO05D002529 1.1e-09 66.2 63 54.0
arahy.Tifrunner.gnm1.ann1.S44JZV Arachis hypogaea HOM05D001361 ORTHO05D002529 1.1e-09 66.2 63 54.0
Lj2g0009692 Lotus japonicus HOM05D001361 ORTHO05D002529 1.1e-09 66.2 63 52.4
PGR102G2437 Punica granatum HOM05D001361 ORTHO05D002529 1.1e-09 66.2 63 57.1
Sabra10G0050900 Salix brachista HOM05D001361 ORTHO05D002529 1.1e-09 66.2 63 57.1
TAR371G0316 Trochodendron aralioides HOM05D001361 ORTHO05D002529 1.1e-09 66.2 63 55.6
BcaC05g26354 Brassica carinata HOM05D001361 ORTHO05D002529 1.4e-09 65.9 59 62.7
C05p23790 Brassica napus HOM05D001361 ORTHO05D002529 1.4e-09 65.9 59 62.7
BolC5t31098H Brassica oleracea HOM05D001361 ORTHO05D002529 1.4e-09 65.9 59 62.7
BraA08t34705Z Brassica rapa HOM05D001361 ORTHO05D002529 1.4e-09 65.9 63 61.9
MBI04_g10405_MAGBIO Magnolia biondii HOM05D001361 ORTHO05D002529 1.4e-09 65.9 61 57.4
Nn4g23060 Nelumbo nucifera HOM05D001361 ORTHO05D002529 1.4e-09 65.9 63 54.0
Potri.008G149000 Populus trichocarpa HOM05D001361 ORTHO05D002529 1.8e-09 65.5 63 57.1
Rhsim12G0130400 Rhododendron simsii HOM05D001361 ORTHO05D002529 1.8e-09 65.5 63 61.9
ATR1120G156 Amborella trichopoda HOM05D001361 ORTHO05D002529 2.4e-09 65.1 63 57.1
Atru.chr6.1371 Acer truncatum HOM05D001361 ORTHO05D002529 3.1e-09 64.7 59 57.6
Duzib248G0766 Durio zibethinus HOM05D001361 ORTHO05D002529 3.1e-09 64.7 59 66.1
Gohir.D04G084248 Gossypium hirsutum HOM05D001361 ORTHO05D002529 3.1e-09 64.7 68 55.9
A09p40430 Brassica napus HOM05D001361 ORTHO05D002529 4.0e-09 64.3 59 62.7
BraA09t39539Z Brassica rapa HOM05D001361 ORTHO05D002529 4.0e-09 64.3 59 62.7
Carub.0005s0164 Capsella rubella HOM05D001361 ORTHO05D002529 4.0e-09 64.3 55 65.5
Duzib251G0880 Durio zibethinus HOM05D001361 ORTHO05D002529 4.0e-09 64.3 59 64.4
CSS0020990 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 6.9e-09 63.5 34 94.1
Lalb_Chr04g0256311 Lupinus albus HOM05D001361 ORTHO05D002529 6.9e-09 63.5 63 47.6
Sc04g0008420 Simmondsia chinensis HOM05D001361 ORTHO05D002529 6.9e-09 63.5 60 53.3
BcaB07g30695 Brassica carinata HOM05D001361 ORTHO05D002529 9.0e-09 63.2 55 61.8
Gohir.D08G096500 Gossypium hirsutum HOM05D001361 ORTHO05D025695 9.0e-09 63.2 64 57.8
MSTRG.12169 Avicennia marina HOM05D001361 ORTHO05D002529 1.2e-08 62.8 62 58.1
Thhalv10004758m.g Eutrema salsugineum HOM05D001361 ORTHO05D002529 1.2e-08 62.8 55 61.8
Gohir.A13G072100 Gossypium hirsutum HOM05D001361 ORTHO05D002529 1.2e-08 62.8 59 61.0
Gohir.D02G057300 Gossypium hirsutum HOM05D001361 ORTHO05D002529 1.2e-08 62.8 59 61.0
Gohir.D05G291300 Gossypium hirsutum HOM05D001361 ORTHO05D002529 1.2e-08 62.8 59 61.0
Gohir.D13G067800 Gossypium hirsutum HOM05D001361 ORTHO05D002529 1.2e-08 62.8 59 61.0
Gorai.008G182400 Gossypium raimondii HOM05D001361 ORTHO05D002529 1.2e-08 62.8 55 61.8
Gorai.013G077300 Gossypium raimondii HOM05D001361 ORTHO05D002529 1.2e-08 62.8 59 61.0
Thecc.02G354100 Theobroma cacao HOM05D001361 ORTHO05D002529 1.2e-08 62.8 59 61.0
EL10Ac6g13158 Beta vulgaris HOM05D001361 ORTHO05D002529 1.5e-08 62.4 55 58.2
CSS0018559 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 1.5e-08 62.4 34 94.1
SGA_v2.0_scaffold54G19444 Striga asiatica HOM05D001361 ORTHO05D002529 1.5e-08 62.4 63 55.6
CARHR145160 Cardamine hirsuta HOM05D001361 ORTHO05D002529 2.0e-08 62.0 60 56.7
unitig_52.g17200 Utricularia gibba HOM05D001361 ORTHO05D002529 2.0e-08 62.0 63 52.4
Migut.E00752 Erythranthe guttata HOM05D001361 ORTHO05D002529 2.6e-08 61.6 56 62.5
Prupe.1G268900 Prunus persica HOM05D001361 ORTHO05D002529 3.4e-08 61.2 60 61.7
TPR.G18467 Trifolium pratense HOM05D001361 ORTHO05D002529 3.4e-08 61.2 64 51.6
Atru.chr11.1898 Acer truncatum HOM05D001361 ORTHO05D002529 4.5e-08 60.8 63 52.4
AT2G02730 Arabidopsis thaliana HOM05D001361 ORTHO05D002529 4.5e-08 60.8 55 61.8
MSTRG.24843 Avicennia marina HOM05D001361 ORTHO05D002529 4.5e-08 60.8 63 54.0
Gohir.D09G047000 Gossypium hirsutum HOM05D001361 ORTHO05D002529 4.5e-08 60.8 59 59.3
Actinidia03190 Actinidia chinensis HOM05D001361 ORTHO05D002529 5.8e-08 60.5 55 63.6
AL5G11920 Arabidopsis lyrata HOM05D001361 ORTHO05D002529 5.8e-08 60.5 55 60.0
Gohir.A12G166300 Gossypium hirsutum HOM05D001361 ORTHO05D002529 5.8e-08 60.5 59 59.3
Gohir.D12G169800 Gossypium hirsutum HOM05D001361 ORTHO05D002529 5.8e-08 60.5 59 59.3
Aa31LG2G7530 Aethionema arabicum HOM05D001361 ORTHO05D002529 7.6e-08 60.1 55 60.0
BcaC06g31220 Brassica carinata HOM05D001361 ORTHO05D002529 7.6e-08 60.1 55 58.2
HanXRQChr17g0538121 Helianthus annuus HOM05D001361 ORTHO05D002529 1.3e-07 59.3 62 53.2
Ca_04747_v3 Cicer arietinum L. HOM05D001361 ORTHO05D002529 1.7e-07 58.9 63 49.2
Sp2g13840 Schrenkiella parvula HOM05D001361 ORTHO05D002529 1.7e-07 58.9 63 54.0
VMungo1215G2637 Vigna mungo HOM05D001361 ORTHO05D002529 1.7e-07 58.9 63 49.2
BcaC04g21517 Brassica carinata HOM05D001361 ORTHO05D002529 2.9e-07 58.2 55 56.4
C09p30830 Brassica napus HOM05D001361 ORTHO05D002529 2.9e-07 58.2 55 56.4
BolC9t55945H Brassica oleracea HOM05D001361 ORTHO05D002529 2.9e-07 58.2 55 56.4
Gorai.006G051200 Gossypium raimondii HOM05D001361 ORTHO05D025695 2.9e-07 58.2 55 61.8
BraA06t27237Z Brassica rapa HOM05D001361 ORTHO05D002529 3.8e-07 57.8 55 56.4
DCAR_028266 Daucus carota HOM05D001361 ORTHO05D002529 3.8e-07 57.8 63 55.6
MD16G1077900 Malus domestica HOM05D001361 ORTHO05D002529 3.8e-07 57.8 52 61.5
BcaC06g34044 Brassica carinata HOM05D001361 ORTHO05D002529 4.9e-07 57.4 55 56.4
A09p23940 Brassica napus HOM05D001361 ORTHO05D002529 4.9e-07 57.4 55 56.4
C07p33340 Brassica napus HOM05D001361 ORTHO05D002529 4.9e-07 57.4 55 56.4
BolC7t43844H Brassica oleracea HOM05D001361 ORTHO05D002529 4.9e-07 57.4 55 56.4
Nitab4.5_0000556g0200 Nicotiana tabacum HOM05D001361 ORTHO05D002529 6.5e-07 57.0 60 51.7
Nitab4.5_0002778g0040 Nicotiana tabacum HOM05D001361 ORTHO05D002529 6.5e-07 57.0 60 51.7
PGSC0003DMG400015124 Solanum tuberosum HOM05D001361 ORTHO05D002529 6.5e-07 57.0 67 49.3
CDE02G3302 Ceratophyllum demersum HOM05D001361 ORTHO05D002529 8.4e-07 56.6 60 51.7
Gohir.D04G022372 Gossypium hirsutum HOM05D001361 ORTHO05D025695 8.4e-07 56.6 55 60.0
Nitab4.5_0000411g0030 Nicotiana tabacum HOM05D001361 ORTHO05D002529 1.1e-06 56.2 59 50.8
ECA246G4804 Erigeron canadensis HOM05D001361 ORTHO05D006173 1.4e-06 55.8 64 46.9
Nitab4.5_0000834g0010 Nicotiana tabacum HOM05D001361 ORTHO05D002529 1.4e-06 55.8 59 50.8
Lsat_1_v5_gn_3_19241 Lactuca sativa HOM05D001361 ORTHO05D002529 1.9e-06 55.5 62 51.6
CAN.G137.6 Capsicum annuum HOM05D001361 ORTHO05D002529 2.5e-06 55.1 56 53.6
Glyma.01G042800 Glycine max HOM05D001361 ORTHO05D002529 2.5e-06 55.1 48 56.2
Solyc08g005230.3 Solanum lycopersicum HOM05D001361 ORTHO05D002529 2.5e-06 55.1 56 53.6
THA.LOC104822101 Tarenaya hassleriana HOM05D001361 ORTHO05D002529 2.5e-06 55.1 34 73.5
A06p43520 Brassica napus HOM05D001361 ORTHO05D002529 3.2e-06 54.7 55 54.5
MD13G1078200 Malus domestica HOM05D001361 ORTHO05D002529 3.2e-06 54.7 58 53.4
Sopen08g001260 Solanum pennellii HOM05D001361 ORTHO05D002529 3.2e-06 54.7 63 50.8
Glyma.02G020800 Glycine max HOM05D001361 ORTHO05D002529 4.2e-06 54.3 48 56.2
THA.LOC104822929 Tarenaya hassleriana HOM05D001361 ORTHO05D002529 4.2e-06 54.3 34 73.5
TAR629G0132 Trochodendron aralioides HOM05D001361 ORTHO05D002529 4.2e-06 54.3 63 54.0
MD05G1007200 Malus domestica HOM05D001361 ORTHO05D002529 5.5e-06 53.9 52 55.8
PSO591G0091 Papaver somniferum HOM05D001361 ORTHO05D002529 5.5e-06 53.9 56 55.4
AUR62028828 Chenopodium quinoa HOM05D001361 ORTHO05D002529 7.1e-06 53.5 55 47.3
Lsat_1_v5_gn_6_3540 Lactuca sativa HOM05D001361 ORTHO05D002529 7.1e-06 53.5 59 55.9
HanXRQChr13g0396491 Helianthus annuus HOM05D001361 ORTHO05D002529 9.3e-06 53.1 34 70.6


User provided reference genes

Program Settings