Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.8e-56 222.2 105 100.0
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.8e-56 222.2 105 100.0
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.8e-43 176.8 87 89.7
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 8.8e-43 176.8 87 87.4
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 2.0e-42 175.6 105 75.2
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 3.3e-42 174.9 87 87.4
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 4.3e-42 174.5 87 86.2
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 5.7e-42 174.1 87 87.4
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 5.7e-42 174.1 87 87.4
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 7.4e-42 173.7 87 86.2
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 7.4e-42 173.7 87 87.4
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 9.7e-42 173.3 85 87.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 9.7e-42 173.3 85 85.9
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.7e-41 172.6 86 87.2
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 2.2e-41 172.2 87 85.1
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.2e-41 172.2 87 85.1
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 2.2e-41 172.2 88 85.2
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 2.8e-41 171.8 87 82.8
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 2.8e-41 171.8 87 85.1
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 6.3e-41 170.6 87 85.1
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 8.2e-41 170.2 87 85.1
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 1.1e-40 169.9 87 85.1
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 1.8e-40 169.1 87 83.9
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.8e-40 169.1 87 88.5
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 2.4e-40 168.7 88 85.2
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.4e-40 168.7 87 85.1
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 3.1e-40 168.3 86 84.9
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 5.3e-40 167.5 87 83.9
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 5.3e-40 167.5 87 85.1
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 5.3e-40 167.5 87 83.9
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 6.9e-40 167.2 87 83.9
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 6.9e-40 167.2 87 83.9
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 6.9e-40 167.2 86 83.7
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 9.1e-40 166.8 83 85.5
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 1.2e-39 166.4 87 83.9
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 1.2e-39 166.4 87 83.9
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 1.2e-39 166.4 87 83.9
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 1.5e-39 166.0 83 84.3
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 2.0e-39 165.6 85 84.7
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 3.4e-39 164.9 83 83.1
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 4.5e-39 164.5 87 81.6
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 4.5e-39 164.5 86 82.6
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 5.9e-39 164.1 87 82.8
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 5.9e-39 164.1 83 83.1
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.9e-39 164.1 83 83.1
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.9e-39 164.1 83 83.1
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.9e-39 164.1 83 83.1
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 5.9e-39 164.1 87 81.6
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 5.9e-39 164.1 87 79.3
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 5.9e-39 164.1 87 81.6
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 7.7e-39 163.7 83 81.9
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 7.7e-39 163.7 87 81.6
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.7e-38 162.5 87 82.8
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 2.9e-38 161.8 87 81.6
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 5.0e-38 161.0 87 80.5
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 5.0e-38 161.0 85 80.0
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 6.5e-38 160.6 87 80.5
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 8.5e-38 160.2 87 79.3
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 8.5e-38 160.2 87 78.2
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 8.5e-38 160.2 87 79.3
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 8.5e-38 160.2 82 81.7
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 1.1e-37 159.8 83 81.9
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 1.1e-37 159.8 83 81.9
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 1.4e-37 159.5 105 66.7
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 2.5e-37 158.7 87 79.3
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.5e-37 158.7 87 79.3
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 2.5e-37 158.7 82 80.5
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 3.2e-37 158.3 87 79.3
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 5.5e-37 157.5 85 80.0
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 9.4e-37 156.8 87 77.0
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 9.4e-37 156.8 88 80.7
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 4.7e-36 154.5 88 77.3
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 7.9e-36 153.7 88 76.1
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 1.4e-35 152.9 86 76.7
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.8e-35 152.5 88 75.0
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 3.0e-35 151.8 86 75.6
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 3.9e-35 151.4 81 76.5
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.1e-34 149.8 77 81.8
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.1e-34 149.8 77 81.8
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.1e-34 149.8 77 81.8
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 1.5e-34 149.4 86 74.4
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 2.6e-34 148.7 77 80.5
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 2.6e-34 148.7 83 77.1
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 4.4e-34 147.9 86 74.4
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 7.4e-34 147.1 87 75.9
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 9.7e-34 146.7 86 75.6
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.7e-33 146.0 85 71.8
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.8e-33 145.2 73 80.8
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 3.7e-33 144.8 88 69.3
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 1.1e-32 143.3 86 75.6
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 2.4e-32 142.1 87 69.0
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 3.1e-32 141.7 101 67.3
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 3.1e-32 141.7 86 73.3
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 3.1e-32 141.7 86 73.3
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.2e-31 139.8 84 75.0
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.2e-31 139.8 86 66.3
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 5.9e-31 137.5 77 80.5
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 5.9e-31 137.5 86 72.1
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.2e-30 135.6 73 75.3
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 6.5e-30 134.0 75 74.7
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.5e-29 132.9 75 74.7
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.5e-29 132.9 75 74.7
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 1.5e-29 132.9 75 74.7
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.5e-29 132.9 75 74.7
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.5e-29 132.9 75 74.7
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.5e-29 132.9 75 74.7
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.5e-29 132.1 75 74.7
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 7.2e-29 130.6 82 68.3
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 9.4e-29 130.2 75 73.3
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 1.6e-28 129.4 75 72.0
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 1.6e-28 129.4 75 72.0
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 2.1e-28 129.0 75 73.3
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 2.1e-28 129.0 75 73.3
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 2.7e-28 128.6 75 73.3
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 2.7e-28 128.6 75 72.0
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 2.7e-28 128.6 84 70.2
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.7e-28 127.9 84 69.0
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 6.1e-28 127.5 182 40.1
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.0e-27 125.2 88 62.5
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.0e-27 125.2 88 62.5
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 6.7e-27 124.0 72 72.2
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 8.8e-27 123.6 113 51.3
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.8e-27 123.6 87 62.1
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 2.6e-26 122.1 75 65.3
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 4.4e-26 121.3 88 62.5
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 2.2e-25 119.0 88 59.1
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 2.2e-25 119.0 88 59.1
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 2.8e-25 118.6 75 61.3
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 1.4e-24 116.3 69 72.5
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 2.7e-23 112.1 86 58.1
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 1.5e-21 106.3 71 64.8
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 1.8e-16 89.4 60 68.3
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.5e-13 79.7 44 75.0
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 2.5e-13 79.0 44 72.7
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 3.6e-12 75.1 45 68.9
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.5e-10 69.7 80 37.5
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 3.7e-09 65.1 46 63.0


User provided reference genes

Program Settings