Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 1.4e-65 252.7 113 100.0
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 3.2e-35 151.8 70 90.0
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 1.2e-34 149.8 95 70.5
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 2.1e-34 149.1 85 77.6
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 2.8e-34 148.7 70 90.0
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.4e-33 146.4 70 90.0
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 4.0e-33 144.8 69 87.0
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.2e-32 143.3 70 87.1
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.2e-32 143.3 70 81.4
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 2.6e-32 142.1 69 84.1
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 4.4e-32 141.4 69 85.5
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.1e-30 136.7 70 78.6
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.1e-30 136.7 70 78.6
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.1e-30 136.7 70 78.6
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.1e-30 136.7 70 78.6
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 1.8e-30 136.0 67 85.1
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 1.8e-30 136.0 67 85.1
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 1.8e-30 136.0 69 84.1
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.8e-30 136.0 70 77.1
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 4.1e-30 134.8 67 88.1
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 5.4e-30 134.4 70 77.1
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 4.3e-27 124.8 69 79.7
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 5.6e-27 124.4 60 86.7
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 9.5e-27 123.6 58 93.1
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 9.5e-27 123.6 58 93.1
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 2.1e-26 122.5 58 91.4
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 3.6e-26 121.7 58 91.4
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 3.6e-26 121.7 58 91.4
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 3.6e-26 121.7 58 91.4
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 4.7e-26 121.3 58 89.7
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.0e-25 120.2 57 89.5
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.0e-25 120.2 58 86.2
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.0e-25 120.2 58 86.2
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 1.0e-25 120.2 58 86.2
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.0e-25 120.2 58 89.7
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.4e-25 119.8 55 94.5
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 2.3e-25 119.0 58 86.2
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 2.3e-25 119.0 58 87.9
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 2.3e-25 119.0 70 68.6
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 3.0e-25 118.6 58 86.2
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 3.0e-25 118.6 58 84.5
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 5.2e-25 117.9 58 84.5
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 5.2e-25 117.9 57 86.0
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 5.2e-25 117.9 57 87.7
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 5.2e-25 117.9 57 87.7
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 5.2e-25 117.9 57 87.7
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 5.2e-25 117.9 57 87.7
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 5.2e-25 117.9 57 87.7
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 5.2e-25 117.9 57 87.7
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 5.2e-25 117.9 57 87.7
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 5.2e-25 117.9 57 87.7
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 6.8e-25 117.5 57 89.5
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 6.8e-25 117.5 57 86.0
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 6.8e-25 117.5 67 76.1
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 8.9e-25 117.1 57 87.7
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 8.9e-25 117.1 57 87.7
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 8.9e-25 117.1 58 86.2
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 1.2e-24 116.7 57 86.0
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 1.2e-24 116.7 57 86.0
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 1.2e-24 116.7 57 86.0
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.2e-24 116.7 57 86.0
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 2.0e-24 115.9 69 69.6
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 2.0e-24 115.9 69 69.6
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 2.0e-24 115.9 69 69.6
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 2.0e-24 115.9 57 84.2
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 2.6e-24 115.5 57 84.2
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 2.6e-24 115.5 67 73.1
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 2.6e-24 115.5 57 84.2
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 2.6e-24 115.5 57 84.2
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 2.6e-24 115.5 58 86.2
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 4.4e-24 114.8 57 86.0
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 5.7e-24 114.4 57 84.2
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 5.7e-24 114.4 57 86.0
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 5.7e-24 114.4 57 86.0
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 5.7e-24 114.4 57 82.5
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 5.7e-24 114.4 57 86.0
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 7.5e-24 114.0 57 87.7
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 7.5e-24 114.0 69 69.6
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 7.5e-24 114.0 58 82.8
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 7.5e-24 114.0 58 82.8
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 7.5e-24 114.0 56 85.7
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 9.8e-24 113.6 69 68.1
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 9.8e-24 113.6 69 68.1
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 9.8e-24 113.6 57 86.0
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 9.8e-24 113.6 69 72.5
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 1.3e-23 113.2 57 86.0
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.3e-23 113.2 58 81.0
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 2.2e-23 112.5 57 82.5
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 2.9e-23 112.1 56 82.1
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 2.9e-23 112.1 56 82.1
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 2.9e-23 112.1 58 79.3
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 3.7e-23 111.7 56 83.9
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 3.7e-23 111.7 56 83.9
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 3.7e-23 111.7 56 83.9
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 3.7e-23 111.7 56 83.9
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 3.7e-23 111.7 56 83.9
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 3.7e-23 111.7 56 83.9
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.7e-23 111.7 56 83.9
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 3.7e-23 111.7 58 84.5
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 4.9e-23 111.3 54 90.7
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.9e-23 111.3 58 79.3
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 6.4e-23 110.9 55 85.5
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 8.3e-23 110.5 56 80.4
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 8.3e-23 110.5 57 80.7
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 1.1e-22 110.2 57 82.5
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 1.4e-22 109.8 57 80.7
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.4e-22 109.8 55 83.6
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 1.4e-22 109.8 58 81.0
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.8e-22 109.4 57 80.7
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.8e-22 109.4 57 80.7
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.8e-22 109.4 57 80.7
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 1.8e-22 109.4 55 85.5
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 1.8e-22 109.4 58 82.8
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 3.2e-22 108.6 58 81.0
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 5.4e-22 107.8 55 85.5
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 5.4e-22 107.8 57 82.5
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 5.4e-22 107.8 57 82.5
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 7.0e-22 107.5 54 83.3
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 1.6e-21 106.3 57 75.4
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 1.6e-21 106.3 57 75.4
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 1.6e-21 106.3 57 77.2
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 1.0e-20 103.6 57 80.7
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-20 103.2 58 74.1
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 2.3e-20 102.4 58 70.7
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 3.9e-20 101.7 58 72.4
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 3.9e-20 101.7 58 72.4
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 5.0e-20 101.3 57 73.7
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.5e-19 99.8 66 60.6
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 3.6e-18 95.1 58 65.5
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.6e-18 95.1 57 64.9
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 1.1e-17 93.6 69 52.2
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.1e-17 93.6 69 56.5
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 2.0e-16 89.4 70 50.0
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.2e-15 85.9 41 90.2
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 2.9e-15 85.5 66 56.1
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 4.9e-15 84.7 59 61.0
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 4.9e-15 84.7 59 61.0
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 4.9e-15 84.7 69 46.4
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 4.6e-13 78.2 51 64.7
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 3.0e-12 75.5 38 86.8
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 7.3e-11 70.9 107 37.4
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 7.3e-11 70.9 54 55.6
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 1.2e-10 70.1 47 59.6
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 6.2e-10 67.8 55 54.5
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 2.3e-09 65.9 30 86.7
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 3.1e-09 65.5 87 39.1
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 3.1e-09 65.5 87 39.1
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 8.9e-09 63.9 54 51.9
C03p67300 Brassica napus HOM05D003606 ORTHO05D016710 3.4e-08 62.0 37 67.6
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 5.8e-08 61.2 34 70.6
C03p42670 Brassica napus HOM05D003606 ORTHO05D016710 5.8e-08 61.2 34 70.6
BolSC21t60295H Brassica oleracea HOM05D003606 ORTHO05D016710 5.8e-08 61.2 34 70.6
BolC2t06237H Brassica oleracea HOM05D003606 ORTHO05D016710 9.9e-08 60.5 34 70.6
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 3.2e-06 55.5 26 84.6
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 3.2e-06 55.5 67 38.8


User provided reference genes

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