Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.9e-178 629.0 304 100.0
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.4e-165 585.5 304 93.1
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.2e-163 578.9 304 92.4
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-149 533.5 309 87.4
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.5e-146 522.3 304 81.9
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 5.5e-146 521.2 303 81.5
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 9.1e-141 503.8 304 77.3
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 3.4e-140 501.9 303 77.6
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 5.0e-139 498.0 304 77.3
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 6.5e-139 497.7 280 83.2
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.1e-138 496.9 303 75.9
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 1.1e-138 496.9 303 77.2
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.9e-138 496.1 303 79.2
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 1.9e-138 496.1 304 76.3
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 4.2e-138 495.0 303 76.9
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 5.5e-138 494.6 304 75.7
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.6e-137 493.0 302 76.2
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.6e-137 493.0 303 76.6
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.6e-137 493.0 303 77.2
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 2.1e-137 492.7 304 75.7
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 2.7e-137 492.3 303 76.2
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 3.6e-137 491.9 304 75.7
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 7.9e-137 490.7 304 75.7
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.4e-136 490.0 304 76.0
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.4e-136 490.0 304 76.0
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 5.1e-136 488.0 332 70.8
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 5.1e-136 488.0 303 76.6
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 8.8e-136 487.3 303 75.2
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 2.0e-135 486.1 303 75.6
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 5.7e-135 484.6 302 75.5
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 7.4e-135 484.2 303 73.3
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 2.2e-134 482.6 301 76.4
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 3.7e-134 481.9 303 74.6
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 3.7e-134 481.9 303 75.2
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 6.3e-134 481.1 303 75.2
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 3.1e-133 478.8 304 74.0
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 3.1e-133 478.8 304 74.0
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 3.1e-133 478.8 303 73.9
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 5.3e-133 478.0 303 75.9
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 9.1e-133 477.2 303 73.6
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.2e-132 476.9 303 74.3
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.2e-132 476.9 303 75.6
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.2e-132 476.9 303 75.6
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 1.5e-132 476.5 301 74.8
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 2.0e-132 476.1 305 73.4
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 2.6e-132 475.7 301 75.1
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 2.6e-132 475.7 303 73.9
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 5.9e-132 474.6 304 73.7
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 2.9e-131 472.2 299 73.6
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 3.8e-131 471.9 275 82.2
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 5.0e-131 471.5 305 74.4
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 1.5e-130 469.9 303 73.6
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.5e-130 469.9 303 71.9
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.5e-130 469.9 302 73.2
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 3.2e-130 468.8 303 74.6
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 3.2e-130 468.8 303 71.6
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 7.2e-130 467.6 303 71.0
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 9.4e-130 467.2 300 71.7
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.2e-129 466.8 328 68.6
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 2.7e-129 465.7 304 73.7
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 1.0e-128 463.8 305 73.4
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 2.3e-128 462.6 303 73.6
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 3.0e-128 462.2 303 69.6
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 5.2e-128 461.5 303 72.6
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 2.0e-127 459.5 304 72.7
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 7.4e-127 457.6 303 73.9
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 9.7e-127 457.2 301 73.8
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 2.2e-126 456.1 302 70.2
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 6.3e-126 454.5 295 72.5
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.4e-125 452.6 304 72.0
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 2.4e-125 452.6 304 70.4
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 4.1e-125 451.8 302 70.5
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 7.0e-125 451.1 302 70.5
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 7.0e-125 451.1 304 71.7
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 7.0e-125 451.1 365 62.5
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 9.1e-125 450.7 303 68.0
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.6e-124 449.1 304 71.4
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.0e-123 447.2 304 71.4
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.7e-123 446.4 302 69.5
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 2.2e-123 446.0 304 67.8
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 2.9e-123 445.7 305 69.8
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 2.9e-123 445.7 304 69.7
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 8.5e-123 444.1 303 69.0
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 1.5e-122 443.4 304 69.1
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 3.2e-122 442.2 302 67.5
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 9.4e-122 440.7 302 67.2
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 9.4e-122 440.7 303 69.0
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 1.2e-121 440.3 304 67.8
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 1.2e-121 440.3 303 68.3
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 1.6e-121 439.9 304 69.7
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 2.1e-121 439.5 303 66.7
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 2.7e-121 439.1 303 66.7
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 3.6e-121 438.7 303 66.7
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 3.6e-121 438.7 303 66.3
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 4.7e-121 438.3 304 68.1
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 6.1e-121 438.0 303 66.7
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.4e-120 436.8 303 67.7
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 5.2e-120 434.9 303 66.3
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 5.2e-120 434.9 302 67.5
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.5e-119 433.3 303 68.3
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 2.0e-119 433.0 303 65.7
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 3.4e-119 432.2 263 77.2
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 4.4e-119 431.8 303 65.3
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.8e-118 429.1 277 72.6
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 6.3e-118 427.9 320 64.7
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 8.3e-118 427.6 302 65.6
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 2.0e-116 422.9 313 65.5
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.7e-116 422.5 302 64.9
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.3e-115 420.2 289 68.2
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 3.8e-115 418.7 304 69.4
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.5e-111 406.8 310 63.5
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 1.7e-110 403.3 246 77.6
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.8e-110 402.5 302 63.2
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 3.7e-110 402.1 303 63.0
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 9.1e-109 397.5 277 69.0
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 8.9e-104 380.9 250 69.2
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.9e-102 375.2 221 81.0
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 7.0e-101 371.3 275 65.1
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 4.3e-98 362.1 304 59.9
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.7e-94 349.0 325 53.8
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.3e-91 340.5 328 50.9
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.7e-91 340.1 295 57.3
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 8.6e-91 337.8 210 74.8
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.3e-90 335.5 194 86.1
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 3.4e-87 325.9 333 53.8
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 2.2e-86 323.2 193 79.8
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 3.7e-86 322.4 205 74.6
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.9e-85 320.1 285 58.2
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 4.1e-85 318.9 298 50.7
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 6.0e-84 315.1 358 46.4
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.0e-83 314.3 194 82.0
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 1.3e-83 313.9 193 74.1
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.7e-83 313.5 244 63.9
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.5e-82 310.5 277 58.8
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 3.1e-80 302.8 293 51.5
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 8.9e-80 301.2 170 85.3
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 2.0e-79 300.1 243 62.1
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.6e-79 299.7 304 53.6
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 2.4e-77 293.1 194 69.6
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 3.5e-76 289.3 302 50.7
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 1.1e-74 284.3 192 66.7
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.1e-74 284.3 193 66.3
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 8.9e-72 274.6 280 47.1
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.1e-69 267.7 303 49.8
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 3.0e-67 259.6 179 70.4
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.2e-61 239.6 147 76.9
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 4.3e-58 229.2 134 79.1
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 5.4e-53 212.2 147 68.7
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 2.2e-46 190.3 127 69.3
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 7.4e-42 175.3 116 70.7
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 1.6e-41 174.1 254 44.1
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 3.7e-41 172.9 208 50.5
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 1.2e-39 167.9 348 30.7
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 8.4e-38 161.8 156 51.3
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 9.3e-37 158.3 223 36.8
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.2e-36 157.9 307 37.5
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 1.5e-34 151.0 89 76.4
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.5e-34 150.2 302 29.5
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 1.6e-33 147.5 90 77.8
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 3.1e-24 116.7 219 30.6
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.0e-15 87.4 67 59.7
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 2.0e-15 87.4 61 62.3
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 3.5e-15 86.7 69 55.1
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 7.7e-15 85.5 69 55.1
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 1.0e-11 75.1 50 74.0
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.2e-07 61.6 55 50.9
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.7e-07 60.5 38 65.8
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 4.5e-07 59.7 55 49.1


User provided reference genes

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