Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.2e-132 476.5 245 100.0
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.4e-123 446.4 233 98.7
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 4.8e-116 421.4 233 93.6
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 1.1e-115 420.2 233 91.0
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 3.1e-115 418.7 233 90.6
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 9.0e-115 417.2 233 90.6
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 1.5e-114 416.4 233 90.1
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 7.6e-114 414.1 233 89.7
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 9.9e-114 413.7 233 90.1
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 1.7e-113 412.9 233 89.7
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 2.9e-113 412.1 233 89.3
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 2.9e-113 412.1 233 89.3
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 4.9e-113 411.4 233 88.8
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 4.9e-113 411.4 233 89.3
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 6.4e-113 411.0 233 89.3
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 2.4e-112 409.1 234 89.3
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 4.2e-112 408.3 233 88.4
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 1.6e-111 406.4 233 86.7
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 2.1e-111 406.0 234 88.9
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 4.6e-111 404.8 233 88.0
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 4.6e-111 404.8 233 87.1
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 2.3e-110 402.5 233 87.1
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 3.0e-110 402.1 234 87.6
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 3.0e-110 402.1 233 87.1
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 6.7e-110 401.0 233 87.1
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 6.7e-110 401.0 233 85.4
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 1.1e-109 400.2 233 86.7
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 1.9e-109 399.4 233 86.7
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 2.5e-109 399.1 233 85.4
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 3.3e-109 398.7 233 86.7
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 3.3e-109 398.7 260 80.4
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 4.3e-109 398.3 233 85.0
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 4.3e-109 398.3 233 84.5
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 5.6e-109 397.9 233 85.4
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 7.4e-109 397.5 233 85.8
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 7.4e-109 397.5 233 86.3
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 1.3e-108 396.7 233 84.5
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 2.8e-108 395.6 233 84.1
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 2.8e-108 395.6 233 84.5
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 2.8e-108 395.6 233 86.3
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 2.8e-108 395.6 233 86.3
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 4.8e-108 394.8 233 83.7
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 6.2e-108 394.4 233 84.5
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 6.2e-108 394.4 233 84.5
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 6.2e-108 394.4 233 84.5
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 6.2e-108 394.4 233 85.0
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.1e-107 393.7 233 85.8
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 1.8e-107 392.9 233 85.0
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 2.4e-107 392.5 233 84.1
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 5.3e-107 391.3 233 83.7
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 6.9e-107 391.0 233 83.3
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 3.4e-106 388.7 233 81.5
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 3.4e-106 388.7 233 82.8
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 4.5e-106 388.3 233 83.7
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 5.8e-106 387.9 233 85.0
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 5.8e-106 387.9 234 84.6
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 7.6e-106 387.5 233 82.8
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 7.6e-106 387.5 233 84.5
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 1.3e-105 386.7 233 82.4
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.3e-105 386.7 233 84.5
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 1.7e-105 386.3 233 82.4
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 2.2e-105 386.0 233 82.4
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 2.2e-105 386.0 233 82.8
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 2.9e-105 385.6 233 83.3
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 3.8e-105 385.2 233 81.5
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 3.8e-105 385.2 233 82.0
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 4.9e-105 384.8 238 83.6
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 4.9e-105 384.8 233 81.5
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 4.9e-105 384.8 233 82.0
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 6.5e-105 384.4 233 82.0
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 8.4e-105 384.0 233 82.0
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 8.4e-105 384.0 233 84.1
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 7.1e-104 380.9 233 81.1
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.6e-103 379.8 233 82.4
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 2.1e-103 379.4 233 80.3
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 2.1e-103 379.4 233 80.3
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 3.5e-103 378.6 233 81.1
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 6.0e-103 377.9 239 79.5
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.0e-102 377.1 233 80.7
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 5.1e-102 374.8 271 74.2
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 8.7e-102 374.0 233 80.3
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 2.1e-100 369.4 233 78.5
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 2.1e-100 369.4 233 79.8
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 3.7e-100 368.6 214 86.4
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 4.8e-100 368.2 233 78.5
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 6.3e-100 367.9 233 78.5
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 6.3e-100 367.9 233 81.5
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 8.2e-100 367.5 233 78.1
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 1.1e-99 367.1 233 77.7
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 1.4e-99 366.7 233 78.1
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 1.4e-99 366.7 233 78.1
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.8e-99 366.3 233 78.1
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.8e-99 366.3 233 78.1
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.8e-99 366.3 233 78.1
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.8e-99 366.3 233 78.1
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 9.0e-99 364.0 233 77.3
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.2e-98 363.6 233 78.5
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 4.5e-98 361.7 211 83.4
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 7.6e-98 360.9 233 78.1
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 7.6e-98 360.9 233 77.7
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.7e-97 359.8 233 77.3
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 7.2e-96 354.4 231 77.9
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 1.2e-95 353.6 233 76.0
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 3.6e-95 352.1 233 74.2
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 3.0e-94 349.0 233 73.4
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.1e-94 348.2 203 90.1
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 3.3e-93 345.5 197 90.4
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 3.3e-93 345.5 233 76.4
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 6.3e-92 341.3 234 75.2
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 9.1e-91 337.4 197 86.8
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 3.2e-88 328.9 233 69.5
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 2.8e-84 315.8 233 71.7
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 3.7e-84 315.5 228 67.1
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 1.5e-82 310.1 234 72.2
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 2.6e-82 309.3 220 74.5
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.6e-82 309.3 279 62.0
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 2.9e-81 305.8 198 80.3
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 6.5e-81 304.7 167 91.6
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 1.4e-80 303.5 220 72.7
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 2.5e-80 302.8 187 79.1
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 1.2e-79 300.4 228 63.6
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 2.6e-77 292.7 228 64.9
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 7.0e-75 284.6 220 70.5
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 5.2e-70 268.5 167 84.4
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 8.8e-54 214.5 229 48.0
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 1.7e-52 210.3 177 61.6
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 7.0e-51 204.9 224 51.3
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 9.2e-51 204.5 130 80.0
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 6.6e-49 198.4 142 67.6
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 2.1e-47 193.4 246 52.0
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 2.4e-43 179.9 236 47.5
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 7.3e-40 168.3 233 45.9
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 8.9e-38 161.4 181 54.7
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 1.9e-35 153.7 103 73.8
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 8.1e-31 138.3 88 77.3
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 6.8e-30 135.2 80 82.5
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 1.9e-27 127.1 74 83.8
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 6.6e-25 118.6 66 87.9
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 1.9e-24 117.1 77 76.6
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 5.4e-19 99.0 66 69.7
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 5.6e-16 89.0 54 77.8
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 2.1e-15 87.0 66 60.6
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 5.8e-13 79.0 67 53.7
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 9.3e-11 71.6 85 50.6
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 7.8e-10 68.6 37 81.1
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 1.0e-09 68.2 36 83.3
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.3e-09 67.8 36 83.3
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.3e-07 61.2 42 73.8
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 4.8e-07 59.3 39 71.8


User provided reference genes

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