Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038612 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 4.8e-28 127.1 63 100.0
CSS0017655 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 5.7e-13 77.0 45 84.4
CSS0018188 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 5.7e-13 77.0 45 84.4
Dinv07522 Davidia involucrata HOM05D002808 ORTHO05D003135 2.5e-08 61.6 45 66.7
Solyc02g078670.3 Solanum lycopersicum HOM05D001676 ORTHO05D001539 5.5e-08 60.5 44 63.6
Sopen02g023530 Solanum pennellii HOM05D001676 ORTHO05D001539 5.5e-08 60.5 44 63.6
PGSC0003DMG401022374 Solanum tuberosum HOM05D001676 ORTHO05D001539 5.5e-08 60.5 44 63.6
Actinidia09985 Actinidia chinensis HOM05D001676 ORTHO05D001539 7.2e-08 60.1 45 71.1
DCAR_028117 Daucus carota HOM05D001676 ORTHO05D001539 1.2e-07 59.3 45 64.4
Dinv08318 Davidia involucrata HOM05D001676 ORTHO05D001539 1.6e-07 58.9 40 75.0
Cc05_g12410 Coffea canephora HOM05D001676 ORTHO05D001539 2.1e-07 58.5 45 68.9
Peaxi162Scf00748g00111 Petunia axillaris HOM05D001676 ORTHO05D001539 2.1e-07 58.5 44 61.4
SalBow8G2358 Salvia bowleyana HOM05D001676 ORTHO05D001539 2.1e-07 58.5 45 66.7
SalBow8G2738 Salvia bowleyana HOM05D001676 ORTHO05D001539 2.1e-07 58.5 45 66.7
CSS0046202 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 2.7e-07 58.2 45 62.2
Hma1.2p1_0600F.1_g187090 Hydrangea macrophylla HOM05D001676 ORTHO05D001539 2.7e-07 58.2 45 68.9
Potri.004G038300 Populus trichocarpa HOM05D001676 ORTHO05D001539 2.7e-07 58.2 44 63.6
Rhsim06G0195700 Rhododendron simsii HOM05D001676 ORTHO05D001539 2.7e-07 58.2 40 70.0
Manes.03G113600 Manihot esculenta HOM05D001676 ORTHO05D001539 3.6e-07 57.8 44 65.9
Potri.011G122900 Populus trichocarpa HOM05D001676 ORTHO05D001539 3.6e-07 57.8 44 68.2
Sc16g0006870 Simmondsia chinensis HOM05D001676 ORTHO05D001539 3.6e-07 57.8 46 67.4
vmacro03835 Vaccinium macrocarpon HOM05D001676 ORTHO05D001539 4.6e-07 57.4 43 65.1
arahy.Tifrunner.gnm1.ann1.FB4L04 Arachis hypogaea HOM05D001676 ORTHO05D001539 6.1e-07 57.0 40 70.0
CAN.G1398.9 Capsicum annuum HOM05D001676 ORTHO05D001539 6.1e-07 57.0 44 61.4
Migut.M01172 Erythranthe guttata HOM05D001676 ORTHO05D001539 6.1e-07 57.0 41 65.9
MD11G1241400 Malus domestica HOM05D001676 ORTHO05D001539 6.1e-07 57.0 51 58.8
Nitab4.5_0001820g0130 Nicotiana tabacum HOM05D001676 ORTHO05D001539 6.1e-07 57.0 44 59.1
Nitab4.5_0009790g0020 Nicotiana tabacum HOM05D001676 ORTHO05D001539 6.1e-07 57.0 44 59.1
Ciclev10007365m.g Citrus clementina HOM05D001676 ORTHO05D001539 7.9e-07 56.6 45 64.4
Haze_09483 Corylus avellana HOM05D001676 ORTHO05D001539 7.9e-07 56.6 45 66.7
Haze_09487 Corylus avellana HOM05D001676 ORTHO05D001539 7.9e-07 56.6 45 66.7
Potri.001G403700 Populus trichocarpa HOM05D001676 ORTHO05D001539 7.9e-07 56.6 44 65.9
QL08p019602 Quercus lobata HOM05D001676 ORTHO05D001539 7.9e-07 56.6 45 64.4
Sabra16G0265300 Salix brachista HOM05D001676 ORTHO05D001539 7.9e-07 56.6 44 65.9
Lj3g0015268 Lotus japonicus HOM05D001676 ORTHO05D001539 1.0e-06 56.2 43 65.1
RhsimUnG0043000 Rhododendron simsii HOM05D001676 ORTHO05D001539 1.0e-06 56.2 43 62.8
arahy.Tifrunner.gnm1.ann1.KG9X9B Arachis hypogaea HOM05D001676 ORTHO05D001539 1.4e-06 55.8 40 70.0
CAN.G162.81 Capsicum annuum HOM05D001676 ORTHO05D001539 1.4e-06 55.8 45 64.4
PSO541G4544 Papaver somniferum HOM05D001676 ORTHO05D001539 1.4e-06 55.8 45 60.0
PSO675G7616 Papaver somniferum HOM05D001676 ORTHO05D001539 1.4e-06 55.8 45 60.0
RcHm_v2.0_Chr5g0034651 Rosa chinensis HOM05D001676 ORTHO05D001539 1.4e-06 55.8 44 65.9
Oeu050834.1 Olea europaea HOM05D001676 ORTHO05D001539 1.8e-06 55.5 41 63.4
PGSC0003DMG400012458 Solanum tuberosum HOM05D001676 ORTHO05D001539 1.8e-06 55.5 45 64.4
TAR627G1003 Trochodendron aralioides HOM05D001676 ORTHO05D001539 1.8e-06 55.5 45 57.8
Cfa020541 Carpinus fangiana HOM05D001676 ORTHO05D001539 2.3e-06 55.1 39 71.8
Nitab4.5_0010846g0010 Nicotiana tabacum HOM05D001676 ORTHO05D001539 2.3e-06 55.1 45 62.2
Sopen07g031520 Solanum pennellii HOM05D001676 ORTHO05D001539 2.3e-06 55.1 45 64.4
Thecc.06G193200 Theobroma cacao HOM05D001676 ORTHO05D001539 2.3e-06 55.1 44 59.1
Gohir.A05G162400 Gossypium hirsutum HOM05D001676 ORTHO05D001539 3.0e-06 54.7 41 63.4
Gohir.D05G165200 Gossypium hirsutum HOM05D001676 ORTHO05D001539 3.0e-06 54.7 41 63.4
Gorai.009G170400 Gossypium raimondii HOM05D001676 ORTHO05D001539 3.0e-06 54.7 41 63.4
Oeu016114.1 Olea europaea HOM05D001676 ORTHO05D001539 3.0e-06 54.7 40 65.0
Prupe.4G186100 Prunus persica HOM05D001676 ORTHO05D001539 3.0e-06 54.7 44 63.6
TWI63G0433 Tripterygium wilfordii HOM05D001676 ORTHO05D001539 3.0e-06 54.7 44 56.8
EL10Ac4g08109 Beta vulgaris HOM05D001676 ORTHO05D001539 3.9e-06 54.3 41 63.4
CANSAT56G1624 Cannabis sativa HOM05D001676 ORTHO05D001539 3.9e-06 54.3 42 66.7
CiPaw.12G121300 Carya illinoinensis HOM05D001676 ORTHO05D001539 3.9e-06 54.3 39 69.2
Duzib235G1004 Durio zibethinus HOM05D001676 ORTHO05D001539 3.9e-06 54.3 41 61.0
MD03G1223400 Malus domestica HOM05D001676 ORTHO05D001539 3.9e-06 54.3 51 56.9
Potri.011G046900 Populus trichocarpa HOM05D001676 ORTHO05D001539 3.9e-06 54.3 44 61.4
PGR042G3422 Punica granatum HOM05D001676 ORTHO05D001539 3.9e-06 54.3 40 65.0
FAN16G2678 Fragaria x ananassa HOM05D001676 ORTHO05D001539 5.1e-06 53.9 44 63.6
FAN21G2156 Fragaria x ananassa HOM05D001676 ORTHO05D001539 5.1e-06 53.9 44 63.6
FAN25G0816 Fragaria x ananassa HOM05D001676 ORTHO05D001539 5.1e-06 53.9 44 63.6
Glyma.13G279600 Glycine max HOM05D001676 ORTHO05D001539 5.1e-06 53.9 42 64.3
Lj2C285T3 Lonicera japonica HOM05D001676 ORTHO05D001539 5.1e-06 53.9 41 61.0
Hund22956 Selenicereus undatus HOM05D001676 ORTHO05D001539 5.1e-06 53.9 41 65.9
Actinidia05604 Actinidia chinensis HOM05D001676 ORTHO05D001539 6.7e-06 53.5 42 61.9
Aqoxy1G02601 Aquilegia oxysepala HOM05D001676 ORTHO05D001539 6.7e-06 53.5 45 55.6
MSTRG.15907 Avicennia marina HOM05D001676 ORTHO05D001539 6.7e-06 53.5 43 60.5
Manes.17G042100 Manihot esculenta HOM05D001676 ORTHO05D001539 6.7e-06 53.5 44 59.1
Nitab4.5_0008930g0010 Nicotiana tabacum HOM05D001676 ORTHO05D001539 6.7e-06 53.5 44 61.4
Phvul.006G188700 Phaseolus vulgaris HOM05D001676 ORTHO05D001539 6.7e-06 53.5 46 56.5
Eucgr.E03358 Eucalyptus grandis HOM05D001676 ORTHO05D001539 8.8e-06 53.1 45 55.6
MD05G1321000 Malus domestica HOM05D001676 ORTHO05D001539 8.8e-06 53.1 41 58.5
Sabra11G0108500 Salix brachista HOM05D001676 ORTHO05D001539 8.8e-06 53.1 44 61.4


User provided reference genes

Program Settings