Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.0e-238 828.2 440 100.0
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 4.1e-203 711.4 440 87.3
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.6e-199 698.4 440 83.9
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.9e-195 686.0 453 83.0
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 3.2e-195 685.3 441 82.5
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 3.9e-193 678.3 457 79.2
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 3.3e-192 675.2 433 81.8
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 5.6e-192 674.5 441 81.0
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 8.1e-191 670.6 434 81.1
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 2.4e-190 669.1 440 80.9
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 4.9e-188 661.4 440 80.0
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 6.4e-188 661.0 434 80.9
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 4.6e-186 654.8 434 79.3
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 8.7e-185 650.6 429 79.7
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 9.6e-184 647.1 431 80.7
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 3.6e-183 645.2 434 79.5
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 6.2e-183 644.4 429 79.0
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 1.5e-181 639.8 434 78.1
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 7.6e-181 637.5 440 79.1
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.7e-180 636.3 434 77.9
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 2.2e-180 636.0 440 76.4
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 1.1e-179 633.6 432 77.1
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 1.1e-179 633.6 425 78.1
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 1.4e-179 633.3 471 74.9
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 4.2e-179 631.7 441 76.6
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 5.4e-179 631.3 440 75.9
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 7.1e-179 630.9 428 79.4
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 7.9e-178 627.5 430 74.9
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 3.0e-177 625.5 431 75.4
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 1.5e-176 623.2 440 74.5
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 3.3e-176 622.1 431 77.0
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 7.4e-176 620.9 424 79.5
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.6e-175 619.8 440 74.8
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 8.1e-175 617.5 434 76.0
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.4e-174 616.7 427 79.4
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 4.0e-174 615.1 440 75.7
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 9.0e-174 614.0 428 74.8
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 5.8e-173 611.3 424 78.5
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 5.8e-173 611.3 424 78.5
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 9.9e-173 610.5 424 78.3
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 9.9e-173 610.5 424 78.3
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 9.9e-173 610.5 424 78.3
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 2.2e-172 609.4 424 77.6
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 3.8e-172 608.6 433 74.6
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 3.8e-172 608.6 432 73.1
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 4.9e-172 608.2 424 77.4
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 6.4e-172 607.8 434 75.3
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 6.4e-172 607.8 421 77.7
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 1.1e-171 607.1 439 75.4
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.1e-171 607.1 440 73.9
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 1.1e-171 607.1 431 72.9
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.4e-171 606.7 432 74.3
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 1.4e-171 606.7 424 75.7
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 1.9e-171 606.3 441 75.3
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.9e-171 606.3 432 75.0
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 1.9e-171 606.3 437 72.5
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 2.5e-171 605.9 424 77.4
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 2.5e-171 605.9 424 78.5
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 4.2e-171 605.1 432 73.1
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 5.5e-171 604.7 477 70.9
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 9.3e-171 604.0 432 74.3
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 1.6e-170 603.2 430 75.8
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 2.1e-170 602.8 448 72.8
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 2.1e-170 602.8 424 77.1
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 2.7e-170 602.4 436 73.2
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 6.0e-170 601.3 424 77.1
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.0e-170 601.3 440 73.6
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.0e-169 600.5 421 74.6
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 1.0e-169 600.5 432 72.5
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 1.8e-169 599.7 433 76.2
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 1.8e-169 599.7 433 73.2
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 1.8e-169 599.7 424 76.2
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 2.3e-169 599.4 440 72.5
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 3.9e-169 598.6 432 71.8
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 8.7e-169 597.4 433 76.4
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 2.5e-168 595.9 432 73.6
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 3.3e-168 595.5 425 78.1
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 1.6e-167 593.2 443 73.1
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 4.8e-167 591.7 422 73.0
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 6.2e-167 591.3 430 73.5
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 1.1e-166 590.5 388 78.1
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 1.4e-166 590.1 430 72.8
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 1.8e-166 589.7 428 71.7
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 2.6e-165 585.9 407 75.9
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 1.3e-164 583.6 424 75.2
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 2.9e-164 582.4 422 71.8
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.5e-163 579.3 436 71.1
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 7.1e-163 577.8 417 74.6
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 1.6e-162 576.6 432 71.3
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 2.1e-162 576.2 423 75.2
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 8.7e-161 570.9 417 74.6
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 7.4e-160 567.8 430 70.2
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 1.8e-158 563.1 524 63.7
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.3e-156 557.0 440 68.0
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.7e-156 556.6 471 65.4
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 4.2e-155 552.0 432 70.1
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 6.1e-154 548.1 433 71.6
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 1.4e-153 547.0 390 78.5
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 5.1e-153 545.0 468 65.8
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 8.8e-153 544.3 442 65.8
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 7.4e-152 541.2 438 70.5
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 7.4e-152 541.2 441 67.6
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 2.2e-151 539.7 515 58.6
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 3.7e-151 538.9 425 67.5
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 7.7e-149 531.2 427 68.9
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 2.2e-148 529.6 390 75.4
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.2e-148 529.6 439 67.9
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 1.4e-147 526.9 394 72.6
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 7.2e-147 524.6 505 63.0
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.4e-142 510.4 435 64.4
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.9e-140 502.7 382 72.5
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 8.5e-140 501.1 424 63.7
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.5e-139 499.6 434 66.8
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 6.5e-132 474.9 421 61.8
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 3.7e-127 459.1 375 65.1
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 1.2e-125 454.1 328 74.7
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 1.7e-124 450.3 445 54.6
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 5.0e-124 448.7 425 59.5
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 5.5e-123 445.3 397 64.5
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 1.6e-122 443.7 420 57.4
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.8e-121 440.3 402 60.7
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 4.8e-119 432.2 339 67.6
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 2.4e-118 429.9 426 55.4
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 1.3e-116 424.1 436 53.2
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.9e-116 422.9 440 56.6
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 4.5e-109 399.1 433 51.7
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 8.3e-103 378.3 358 59.5
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 1.0e-68 265.0 216 64.4
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 2.8e-66 256.9 384 39.1
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 3.3e-59 233.4 429 35.4
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 9.4e-38 162.2 224 48.7
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 5.1e-28 129.8 84 77.4
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 1.4e-17 95.1 65 75.4
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.6e-16 91.7 46 93.5
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.6e-16 91.7 46 93.5
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 5.0e-07 60.1 46 69.6


User provided reference genes

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