Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 4.5e-60 234.6 132 100.0
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.3e-38 163.3 110 78.2
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.2e-38 162.5 101 80.2
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 6.3e-38 161.0 103 80.6
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 8.2e-38 160.6 109 78.0
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.0e-36 156.0 103 77.7
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 1.0e-35 153.7 101 78.2
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 1.3e-35 153.3 103 80.6
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 7.2e-34 147.5 104 76.0
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 7.2e-34 147.5 103 74.8
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.2e-33 146.7 103 77.7
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.2e-33 146.7 103 77.7
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 4.6e-33 144.8 98 73.5
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 1.8e-32 142.9 106 72.6
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.3e-32 142.5 105 71.4
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 3.9e-32 141.7 103 71.8
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 1.5e-31 139.8 101 72.3
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.5e-31 139.0 102 68.6
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 4.3e-31 138.3 101 71.3
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 9.7e-31 137.1 97 71.1
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 1.3e-30 136.7 101 70.3
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 3.7e-30 135.2 100 73.0
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 8.2e-30 134.0 100 67.0
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 1.1e-29 133.7 98 70.4
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 1.4e-29 133.3 97 70.1
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 2.4e-29 132.5 103 69.9
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 3.1e-29 132.1 97 70.1
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 3.1e-29 132.1 103 69.9
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 3.1e-29 132.1 103 69.9
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 3.1e-29 132.1 98 71.4
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 4.1e-29 131.7 98 69.4
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 4.1e-29 131.7 98 69.4
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.1e-29 131.7 98 70.4
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 5.3e-29 131.3 101 68.3
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 1.2e-28 130.2 103 73.8
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 1.2e-28 130.2 103 73.8
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.5e-28 129.8 110 69.1
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.0e-28 129.4 94 71.3
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 2.0e-28 129.4 112 67.9
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 4.5e-28 128.3 103 69.9
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 4.5e-28 128.3 100 72.0
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 7.7e-28 127.5 103 68.0
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 1.0e-27 127.1 103 68.9
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 1.7e-27 126.3 96 64.6
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 2.9e-27 125.6 85 71.8
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 3.8e-27 125.2 95 65.3
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 5.0e-27 124.8 97 66.0
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 5.0e-27 124.8 104 63.5
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 6.5e-27 124.4 98 67.3
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 6.5e-27 124.4 103 68.0
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 6.5e-27 124.4 97 69.1
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 8.5e-27 124.0 98 66.3
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.1e-26 123.6 103 65.0
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.1e-26 123.6 103 65.0
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.9e-26 122.9 97 61.9
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 2.5e-26 122.5 98 66.3
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 2.5e-26 122.5 106 63.2
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 4.2e-26 121.7 102 63.7
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 4.2e-26 121.7 97 62.9
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 9.4e-26 120.6 103 65.0
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 9.4e-26 120.6 97 66.0
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 9.4e-26 120.6 138 55.8
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 1.2e-25 120.2 97 66.0
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.2e-25 120.2 97 68.0
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 1.6e-25 119.8 104 67.3
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 1.6e-25 119.8 102 63.7
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.6e-25 119.8 83 71.1
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 2.1e-25 119.4 103 65.0
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 2.1e-25 119.4 101 62.4
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 2.1e-25 119.4 101 64.4
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 2.1e-25 119.4 97 68.0
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 2.7e-25 119.0 97 67.0
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 3.6e-25 118.6 97 63.9
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 4.7e-25 118.2 96 67.7
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 4.7e-25 118.2 91 67.0
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 7.9e-25 117.5 98 64.3
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.4e-24 116.7 104 60.6
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 3.9e-24 115.2 98 61.2
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.9e-24 115.2 98 61.2
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.9e-24 115.2 98 61.2
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 6.7e-24 114.4 105 61.0
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 6.7e-24 114.4 110 55.5
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 8.8e-24 114.0 98 60.2
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 1.1e-23 113.6 97 62.9
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 1.5e-23 113.2 96 61.5
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 2.0e-23 112.8 104 59.6
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.0e-23 112.8 75 70.7
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.3e-23 112.1 98 60.2
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 4.4e-23 111.7 103 61.2
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 5.7e-23 111.3 65 75.4
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 5.7e-23 111.3 103 64.1
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 9.7e-23 110.5 96 60.4
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.3e-22 110.2 104 56.7
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 1.3e-22 110.2 104 58.7
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 2.2e-22 109.4 98 58.2
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.2e-22 109.4 79 75.9
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.2e-22 109.4 79 75.9
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 3.7e-22 108.6 79 70.9
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 4.8e-22 108.2 93 64.5
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 1.8e-21 106.3 103 56.3
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 3.1e-21 105.5 92 57.6
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 4.1e-21 105.1 94 57.4
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 1.2e-20 103.6 92 57.6
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 1.5e-20 103.2 97 55.7
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 1.5e-20 103.2 94 57.4
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 1.5e-20 103.2 94 57.4
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 2.6e-20 102.4 94 56.4
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 2.6e-20 102.4 98 52.0
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 3.4e-20 102.1 94 60.6
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 4.5e-20 101.7 94 56.4
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 4.5e-20 101.7 96 56.2
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 2.2e-19 99.4 108 53.7
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 2.2e-19 99.4 78 69.2
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 3.8e-19 98.6 108 53.7
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 5.0e-19 98.2 92 55.4
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 5.0e-19 98.2 92 55.4
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 5.0e-19 98.2 92 55.4
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 4.2e-18 95.1 90 54.4
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 5.5e-18 94.7 90 53.3
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.6e-17 93.2 88 55.7
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 4.7e-17 91.7 78 64.1
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 8.0e-17 90.9 79 62.0
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 1.0e-16 90.5 67 59.7
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 3.0e-16 89.0 74 62.2
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 3.9e-16 88.6 78 61.5
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 5.2e-16 88.2 99 51.5
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 6.7e-16 87.8 87 51.7
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 8.8e-16 87.4 91 50.5
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.1e-15 87.0 92 50.0
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 2.0e-15 86.3 91 49.5
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 1.7e-14 83.2 87 50.6
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 4.1e-13 78.6 98 46.9
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 4.5e-12 75.1 75 52.0
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 2.2e-11 72.8 53 64.2
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 2.2e-11 72.8 68 66.2
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 2.9e-11 72.4 73 52.1
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 2.9e-11 72.4 56 64.3
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 2.5e-10 69.3 61 54.1
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 4.2e-10 68.6 61 50.8
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 5.5e-10 68.2 34 94.1
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 9.4e-10 67.4 61 52.5
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 2.1e-09 66.2 90 44.4
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 3.6e-09 65.5 58 50.0
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 3.6e-09 65.5 85 42.4
MBI03_g02704_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 5.2e-08 61.6 37 75.7
MBI05_g13276_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 6.7e-08 61.2 34 82.4
MBI08_g15145_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D004199 6.7e-08 61.2 74 48.6
MBI15_g16478_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 6.7e-08 61.2 36 80.6
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 1.7e-06 56.6 66 45.5
AagrBONN_evm.TU.Sc2ySwM_362.1955 Anthoceros agrestis HOM05D005070 ORTHO05D005987 2.8e-06 55.8 66 43.9
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 2.8e-06 55.8 46 58.7
Pp3c7_6970 Physcomitrium patens HOM05D005070 ORTHO05D005987 2.8e-06 55.8 71 43.7


User provided reference genes

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