Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 7.7e-71 270.4 138 100.0
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.5e-34 149.8 84 86.9
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.5e-34 149.8 84 86.9
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 3.5e-31 138.7 82 81.7
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 5.0e-30 134.8 80 76.2
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 2.5e-29 132.5 81 79.0
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 3.3e-29 132.1 84 75.0
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 1.6e-28 129.8 84 76.2
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 2.1e-28 129.4 84 70.2
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 2.1e-28 129.4 84 71.4
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 4.7e-28 128.3 84 72.6
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 3.0e-27 125.6 137 50.4
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 3.0e-27 125.6 84 70.2
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 3.0e-27 125.6 82 72.0
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 4.0e-27 125.2 85 70.6
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 4.0e-27 125.2 84 67.9
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 8.9e-27 124.0 85 70.6
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 1.5e-26 123.2 85 70.6
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 1.5e-26 123.2 84 67.9
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 2.0e-26 122.9 84 67.9
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 2.6e-26 122.5 84 67.9
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 2.6e-26 122.5 84 67.9
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 2.6e-26 122.5 91 64.8
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 3.4e-26 122.1 85 68.2
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 4.4e-26 121.7 85 69.4
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 5.7e-26 121.3 85 68.2
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 5.7e-26 121.3 84 65.5
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 5.7e-26 121.3 85 69.4
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 5.7e-26 121.3 85 70.6
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 5.7e-26 121.3 84 71.4
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 7.5e-26 120.9 85 65.9
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 9.8e-26 120.6 77 76.6
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 9.8e-26 120.6 82 72.0
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 1.3e-25 120.2 84 66.7
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 1.3e-25 120.2 83 69.9
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 1.7e-25 119.8 85 68.2
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 1.7e-25 119.8 84 66.7
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 2.2e-25 119.4 80 70.0
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 2.2e-25 119.4 84 65.5
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.9e-25 119.0 83 69.9
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 2.9e-25 119.0 82 69.5
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 3.7e-25 118.6 85 68.2
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 4.9e-25 118.2 85 67.1
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 4.9e-25 118.2 85 68.2
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 4.9e-25 118.2 83 68.7
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 4.9e-25 118.2 82 67.1
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 6.3e-25 117.9 84 66.7
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 6.3e-25 117.9 81 69.1
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 8.3e-25 117.5 84 66.7
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 1.1e-24 117.1 85 65.9
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 1.1e-24 117.1 85 69.4
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 1.8e-24 116.3 85 69.4
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 1.8e-24 116.3 85 67.1
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 2.4e-24 115.9 95 61.1
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 2.4e-24 115.9 82 68.3
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 3.2e-24 115.5 84 67.9
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 3.2e-24 115.5 84 61.9
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 4.1e-24 115.2 82 65.9
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 4.1e-24 115.2 84 65.5
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 4.1e-24 115.2 84 65.5
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 5.4e-24 114.8 84 64.3
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 7.0e-24 114.4 84 66.7
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 9.2e-24 114.0 81 66.7
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 9.2e-24 114.0 86 64.0
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 9.2e-24 114.0 84 63.1
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 1.2e-23 113.6 85 63.5
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 1.6e-23 113.2 82 62.2
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 2.0e-23 112.8 84 66.7
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 3.5e-23 112.1 83 63.9
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 4.6e-23 111.7 85 64.7
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 4.6e-23 111.7 84 65.5
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 4.6e-23 111.7 82 64.6
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 7.8e-23 110.9 84 64.3
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 7.8e-23 110.9 82 64.6
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 2.3e-22 109.4 76 67.1
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 3.9e-22 108.6 86 60.5
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 6.6e-22 107.8 81 64.2
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 6.6e-22 107.8 76 71.1
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 1.1e-21 107.1 82 61.0
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 2.5e-21 105.9 84 59.5
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 3.3e-21 105.5 84 66.7
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 3.3e-21 105.5 84 66.7
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 4.3e-21 105.1 76 69.7
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 5.6e-21 104.8 85 64.7
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 7.3e-21 104.4 84 59.5
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 7.3e-21 104.4 83 56.6
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.8e-20 102.4 73 69.9
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 3.6e-20 102.1 84 60.7
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 8.0e-20 100.9 81 58.0
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 2.3e-19 99.4 76 64.5
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 3.1e-19 99.0 82 58.5
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 5.2e-19 98.2 73 67.1
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 6.8e-19 97.8 79 62.0
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 1.5e-18 96.7 84 58.3
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 5.8e-18 94.7 74 60.8
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 9.8e-18 94.0 81 55.6
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 3.7e-17 92.0 70 62.9
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 9.2e-16 87.4 77 57.1
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 3.9e-14 82.0 83 47.0
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 3.9e-14 82.0 82 48.8
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 2.1e-12 76.3 81 48.1
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 2.0e-10 69.7 81 43.2
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 2.0e-10 69.7 78 44.9
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 7.5e-10 67.8 64 54.7
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 3.7e-09 65.5 81 51.9
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 3.7e-09 65.5 36 75.0
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 1.1e-08 63.9 49 67.3
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 2.4e-08 62.8 82 39.0
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 4.1e-08 62.0 52 57.7


User provided reference genes

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