Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 9.0e-161 570.1 266 100.0
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.4e-158 562.8 266 98.9
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 1.3e-138 496.5 259 86.5
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.3e-138 496.5 270 86.7
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 5.9e-136 487.6 264 84.8
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 7.7e-136 487.3 255 87.5
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.3e-135 486.5 260 85.4
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 2.2e-135 485.7 269 84.0
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 2.2e-135 485.7 267 83.1
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 6.5e-135 484.2 270 84.4
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 6.5e-135 484.2 248 88.7
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 2.5e-134 482.3 268 84.3
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 4.2e-134 481.5 266 83.1
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 5.5e-134 481.1 268 82.8
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.1e-133 479.2 267 83.5
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 2.1e-133 479.2 268 82.5
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 6.1e-133 477.6 264 84.1
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.0e-132 476.9 268 83.6
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 1.8e-132 476.1 263 83.7
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 3.0e-132 475.3 264 83.7
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 5.2e-132 474.6 268 83.2
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 8.8e-132 473.8 273 82.8
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.1e-131 473.4 264 83.3
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.1e-131 473.4 266 82.3
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.5e-131 473.0 268 82.5
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 5.7e-131 471.1 268 81.3
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 2.2e-130 469.2 268 81.3
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.8e-130 468.8 269 82.2
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 3.7e-130 468.4 261 82.4
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 4.8e-130 468.0 266 81.6
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 8.2e-130 467.2 264 80.7
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.1e-129 466.8 264 79.5
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.1e-129 466.8 262 80.5
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 1.8e-129 466.1 268 81.0
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 2.4e-129 465.7 268 79.5
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 3.1e-129 465.3 265 80.4
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 7.0e-129 464.2 257 82.9
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 2.6e-128 462.2 268 78.7
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 2.6e-128 462.2 268 78.7
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 3.5e-128 461.8 267 79.8
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.2e-127 459.1 248 85.1
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 3.8e-127 458.4 268 80.6
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 3.8e-127 458.4 252 82.9
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.5e-126 456.4 260 81.9
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 2.5e-126 455.7 266 80.1
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 2.5e-126 455.7 271 79.7
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 3.2e-126 455.3 270 80.4
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 5.5e-126 454.5 260 79.2
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 1.2e-125 453.4 262 79.4
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 1.2e-125 453.4 268 77.2
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 2.1e-125 452.6 268 79.1
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 2.7e-125 452.2 265 79.2
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.0e-124 450.3 268 78.7
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.3e-124 449.1 253 81.8
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 2.3e-124 449.1 271 78.2
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 2.3e-124 449.1 265 78.5
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.0e-124 448.7 253 81.0
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 4.0e-124 448.4 269 77.0
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 4.0e-124 448.4 276 76.8
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 5.2e-124 448.0 269 77.0
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 8.8e-124 447.2 269 76.6
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 1.2e-123 446.8 268 76.5
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 4.4e-123 444.9 265 78.1
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 9.7e-123 443.7 269 76.2
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 2.8e-122 442.2 269 75.8
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 6.3e-122 441.0 253 79.8
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 8.2e-122 440.7 266 74.8
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 3.1e-121 438.7 266 74.4
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 4.1e-121 438.3 261 77.4
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 7.0e-121 437.6 268 79.1
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 9.1e-121 437.2 262 75.2
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 9.1e-121 437.2 280 75.0
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 9.1e-121 437.2 280 74.6
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 9.1e-121 437.2 260 75.8
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 9.1e-121 437.2 277 74.0
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.2e-120 436.8 280 75.0
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.6e-120 436.4 268 76.5
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.5e-120 435.3 280 75.0
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 3.5e-120 435.3 267 76.4
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 4.5e-120 434.9 246 80.5
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.3e-119 433.3 279 73.1
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.7e-119 433.0 257 78.2
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.7e-119 433.0 273 77.7
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.1e-118 430.3 256 77.7
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 3.2e-118 428.7 259 77.2
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.2e-117 426.8 269 74.7
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 2.1e-117 426.0 209 91.9
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.1e-117 426.0 242 81.8
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 3.6e-117 425.2 265 74.7
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 4.7e-117 424.9 267 74.2
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 6.1e-117 424.5 265 74.0
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 6.1e-117 424.5 267 73.8
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 8.0e-117 424.1 269 77.0
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 8.0e-117 424.1 255 74.5
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 8.0e-117 424.1 260 73.8
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 1.0e-116 423.7 265 74.3
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 6.8e-116 421.0 265 74.3
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.4e-115 418.3 288 69.4
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.2e-114 416.0 286 69.9
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 4.8e-114 414.8 266 72.2
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 8.3e-114 414.1 263 74.9
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.4e-113 413.3 254 74.8
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.6e-112 409.8 219 84.5
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.7e-111 406.4 259 73.0
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.1e-110 403.7 242 74.8
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 7.2e-110 401.0 268 69.8
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 2.8e-109 399.1 291 66.0
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.3e-108 396.0 294 68.4
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.3e-106 390.2 231 74.0
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 5.4e-105 384.8 270 68.9
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 5.9e-104 381.3 221 81.0
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 2.3e-103 379.4 231 71.9
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 3.8e-103 378.6 224 75.4
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 6.1e-101 371.3 235 68.1
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 1.0e-100 370.5 236 69.5
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 3.0e-100 369.0 222 75.7
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 8.9e-100 367.5 240 66.7
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 4.9e-98 361.7 222 69.8
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.4e-97 360.1 218 71.1
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 5.0e-95 351.7 192 82.3
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.6e-93 346.7 305 58.7
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 6.2e-93 344.7 268 64.6
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 5.4e-89 331.6 335 53.1
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 2.0e-88 329.7 231 68.0
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 6.0e-88 328.2 164 87.8
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.9e-86 323.2 181 82.9
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.5e-86 322.8 270 61.1
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 5.4e-81 305.1 215 59.5
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.3e-79 299.7 198 65.2
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 3.9e-79 298.9 162 85.2
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.1e-69 266.5 163 78.5
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.4e-68 263.8 154 77.3
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 9.0e-68 261.2 139 84.9
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 1.4e-60 237.3 199 59.3
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.7e-58 230.3 213 57.3
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.8e-52 210.3 121 78.5
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 4.9e-50 202.2 121 76.0
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.5e-38 163.3 104 76.9
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 6.1e-32 142.1 83 81.9
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 6.5e-26 122.1 67 73.1
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 1.4e-25 120.9 72 76.4
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 1.6e-24 117.5 80 66.2
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.3e-23 113.6 65 72.3
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 5.7e-22 109.0 54 87.0
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 1.7e-21 107.5 64 75.0
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.5e-17 93.6 60 75.0
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 1.2e-16 91.3 90 52.2
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 6.1e-16 89.0 89 53.9
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 2.0e-14 84.0 58 74.1
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 5.7e-14 82.4 83 49.4
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 3.7e-13 79.7 43 74.4
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 8.2e-13 78.6 52 71.2
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.2e-10 70.5 58 62.1
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 6.5e-10 68.9 49 67.3
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.4e-07 61.2 58 53.4
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 4.0e-07 59.7 153 29.4


User provided reference genes

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