Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038548 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.0e-27 125.9 62 100.0
CSS0008185 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.1e-11 72.8 43 79.1
CAN.G1241.9 Capsicum annuum HOM05D004235 ORTHO05D005157 1.1e-11 72.8 46 78.3
Peaxi162Scf00498g00032 Petunia axillaris HOM05D004235 ORTHO05D005157 1.1e-11 72.8 46 78.3
Nitab4.5_0000540g0150 Nicotiana tabacum HOM05D004235 ORTHO05D005157 1.8e-11 72.0 46 78.3
Nitab4.5_0003781g0020 Nicotiana tabacum HOM05D004235 ORTHO05D005157 1.8e-11 72.0 46 78.3
Solyc12g008710.2 Solanum lycopersicum HOM05D004235 ORTHO05D005157 2.3e-11 71.6 46 76.1
Sopen12g003640 Solanum pennellii HOM05D004235 ORTHO05D005157 2.3e-11 71.6 46 76.1
PGSC0003DMG402000346 Solanum tuberosum HOM05D004235 ORTHO05D005157 2.3e-11 71.6 46 76.1
TAR383G0914 Trochodendron aralioides HOM05D004235 ORTHO05D005157 5.2e-11 70.5 55 70.9
EL10Ac8g19244 Beta vulgaris HOM05D004235 ORTHO05D005157 6.8e-11 70.1 40 82.5
PGR102G2758 Punica granatum HOM05D004235 ORTHO05D005157 6.8e-11 70.1 55 65.5
Cc06_g10940 Coffea canephora HOM05D004235 ORTHO05D005157 8.9e-11 69.7 46 78.3
Cpa.g.sc78.62 Carica papaya HOM05D004235 ORTHO05D005157 1.2e-10 69.3 55 61.8
Hma1.2p1_1074F.1_g254400 Hydrangea macrophylla HOM05D004235 ORTHO05D005157 1.2e-10 69.3 46 78.3
Hund06688 Selenicereus undatus HOM05D004235 ORTHO05D005157 1.2e-10 69.3 46 76.1
CSS0042623 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.5e-10 68.9 46 78.3
CSS0043888 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.5e-10 68.9 46 78.3
Rhsim03G0234900 Rhododendron simsii HOM05D004235 ORTHO05D005157 1.5e-10 68.9 46 76.1
CsaV3_2G001610 Cucumis sativus L. HOM05D004235 ORTHO05D005157 2.0e-10 68.6 45 77.8
COL.COLO4_18249 Corchorus olitorius HOM05D004235 ORTHO05D005157 2.6e-10 68.2 55 61.8
MELO3C004614.2 Cucumis melo HOM05D004235 ORTHO05D005157 2.6e-10 68.2 40 82.5
Dinv36730 Davidia involucrata HOM05D004235 ORTHO05D005157 2.6e-10 68.2 42 81.0
Lj7C671G7 Lonicera japonica HOM05D004235 ORTHO05D005157 2.6e-10 68.2 55 63.6
ClCG11G001880 Citrullus lanatus HOM05D004235 ORTHO05D005157 3.4e-10 67.8 40 82.5
Sed0001781 Sechium edule HOM05D004235 ORTHO05D005157 3.4e-10 67.8 40 82.5
Cfa003136 Carpinus fangiana HOM05D004235 ORTHO05D005157 4.4e-10 67.4 45 75.6
CiPaw.03G220000 Carya illinoinensis HOM05D004235 ORTHO05D005157 4.4e-10 67.4 33 93.9
Haze_25867 Corylus avellana HOM05D004235 ORTHO05D005157 4.4e-10 67.4 45 75.6
Migut.J00436 Erythranthe guttata HOM05D004235 ORTHO05D005157 4.4e-10 67.4 47 70.2
Nn8g38947 Nelumbo nucifera HOM05D004235 ORTHO05D005157 4.4e-10 67.4 40 80.0
CANSAT56G3324 Cannabis sativa HOM05D004235 ORTHO05D005157 5.8e-10 67.0 40 82.5
Gohir.A05G028200 Gossypium hirsutum HOM05D004235 ORTHO05D005157 5.8e-10 67.0 40 80.0
Oeu052124.2 Olea europaea HOM05D004235 ORTHO05D005157 5.8e-10 67.0 46 73.9
QL02p063521 Quercus lobata HOM05D004235 ORTHO05D005157 5.8e-10 67.0 40 80.0
Thecc.09G094700 Theobroma cacao HOM05D004235 ORTHO05D005157 5.8e-10 67.0 55 61.8
vmacro06271 Vaccinium macrocarpon HOM05D004235 ORTHO05D005157 5.8e-10 67.0 46 73.9
GSVIVG01015250001 Vitis vinifera HOM05D004235 ORTHO05D005157 5.8e-10 67.0 40 82.5
HPP92_009154 Vanilla planifolia HOM05D004235 ORTHO05D005157 7.5e-10 66.6 33 90.9
Aqoxy7G01320 Aquilegia oxysepala HOM05D004235 ORTHO05D005157 9.8e-10 66.2 45 75.6
AUR62027475 Chenopodium quinoa HOM05D004235 ORTHO05D005157 9.8e-10 66.2 40 80.0
AUR62034005 Chenopodium quinoa HOM05D004235 ORTHO05D005157 9.8e-10 66.2 40 80.0
Duzib168G2142 Durio zibethinus HOM05D004235 ORTHO05D005157 1.3e-09 65.9 55 60.0
SGA_v2.0_scaffold62G21574 Striga asiatica HOM05D004235 ORTHO05D005157 1.3e-09 65.9 46 67.4
Gohir.D05G029800 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.7e-09 65.5 40 77.5
Gorai.009G030000 Gossypium raimondii HOM05D004235 ORTHO05D005157 1.7e-09 65.5 40 77.5
THA.LOC104817747 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 1.7e-09 65.5 40 77.5
Ciclev10010146m.g Citrus clementina HOM05D004235 ORTHO05D005157 2.2e-09 65.1 40 75.0
MD15G1202300 Malus domestica HOM05D004235 ORTHO05D005157 2.2e-09 65.1 40 77.5
Prupe.7G214900 Prunus persica HOM05D004235 ORTHO05D005157 2.2e-09 65.1 40 77.5
Eucgr.C03689 Eucalyptus grandis HOM05D004235 ORTHO05D005157 2.9e-09 64.7 33 90.9
AL8G32560 Arabidopsis lyrata HOM05D004235 ORTHO05D005157 3.7e-09 64.3 33 87.9
BcaB08g36065 Brassica carinata HOM05D004235 ORTHO05D005157 3.7e-09 64.3 33 87.9
BcaC04g20058 Brassica carinata HOM05D004235 ORTHO05D005157 3.7e-09 64.3 33 87.9
A10p14070 Brassica napus HOM05D004235 ORTHO05D005157 3.7e-09 64.3 33 87.9
C09p48300 Brassica napus HOM05D004235 ORTHO05D005157 3.7e-09 64.3 33 87.9
BolC9t57680H Brassica oleracea HOM05D004235 ORTHO05D005157 3.7e-09 64.3 33 87.9
BraA10t43498Z Brassica rapa HOM05D004235 ORTHO05D005157 3.7e-09 64.3 33 87.9
Carub.0008s1721 Capsella rubella HOM05D004235 ORTHO05D005157 3.7e-09 64.3 33 87.9
CARHR270480 Cardamine hirsuta HOM05D004235 ORTHO05D005157 3.7e-09 64.3 33 87.9
Thhalv10012682m.g Eutrema salsugineum HOM05D004235 ORTHO05D005157 3.7e-09 64.3 33 87.9
Manes.16G105300 Manihot esculenta HOM05D004235 ORTHO05D005157 3.7e-09 64.3 40 77.5
Sp6g18480 Schrenkiella parvula HOM05D004235 ORTHO05D005157 3.7e-09 64.3 33 87.9
Sc04g0004610 Simmondsia chinensis HOM05D004235 ORTHO05D005157 4.9e-09 63.9 46 69.6
Zm00001eb162240 Zea mays HOM05D004235 ORTHO05D005157 4.9e-09 63.9 40 75.0
arahy.Tifrunner.gnm1.ann1.00M5T5 Arachis hypogaea HOM05D004235 ORTHO05D005157 6.4e-09 63.5 33 87.9
arahy.Tifrunner.gnm1.ann1.VZDV7L Arachis hypogaea HOM05D004235 ORTHO05D005157 6.4e-09 63.5 33 87.9
SEGI_16235 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 6.4e-09 63.5 40 75.0
THA.LOC104811734 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 6.4e-09 63.5 57 56.1
Aa31LG3G12550 Aethionema arabicum HOM05D004235 ORTHO05D005157 8.3e-09 63.2 33 84.8
AT5G56730 Arabidopsis thaliana HOM05D004235 ORTHO05D005157 8.3e-09 63.2 33 84.8
TWI63G1589 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 8.3e-09 63.2 53 58.5
Atru.chr7.1524 Acer truncatum HOM05D004235 ORTHO05D005157 1.1e-08 62.8 40 75.0
TWI34G1426 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 1.1e-08 62.8 40 72.5
ECA236G4919 Erigeron canadensis HOM05D004235 ORTHO05D005157 1.4e-08 62.4 33 84.8
Glyma.05G223700 Glycine max HOM05D004235 ORTHO05D005157 1.4e-08 62.4 33 84.8
Glyma.08G030800 Glycine max HOM05D004235 ORTHO05D005157 1.4e-08 62.4 33 84.8
HanXRQChr04g0112481 Helianthus annuus HOM05D004235 ORTHO05D005157 1.4e-08 62.4 33 81.8
PSO832G0536 Papaver somniferum HOM05D004235 ORTHO05D005157 1.4e-08 62.4 40 72.5
Phvul.002G305500 Phaseolus vulgaris HOM05D004235 ORTHO05D005157 1.4e-08 62.4 33 84.8
VMungo0251G2139 Vigna mungo HOM05D004235 ORTHO05D005157 1.4e-08 62.4 33 84.8
FAN26G0912 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.9e-08 62.0 33 84.8
FAN26G2547 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.9e-08 62.0 33 84.8
FAN28G2658 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.9e-08 62.0 33 84.8
Lsat_1_v5_gn_8_88100 Lactuca sativa HOM05D004235 ORTHO05D005157 1.9e-08 62.0 33 81.8
PSO063G2511 Papaver somniferum HOM05D004235 ORTHO05D005157 1.9e-08 62.0 33 81.8
RcHm_v2.0_Chr2g0092561 Rosa chinensis HOM05D004235 ORTHO05D005157 1.9e-08 62.0 33 84.8
SGA_v2.0_scaffold21G09333 Striga asiatica HOM05D004235 ORTHO05D005157 1.9e-08 62.0 46 60.9
Lj4g0008017 Lotus japonicus HOM05D004235 ORTHO05D005157 2.4e-08 61.6 33 84.8
Medtr8g101950 Medicago truncatula HOM05D004235 ORTHO05D005157 2.4e-08 61.6 33 84.8
Psat7g019200 Pisum sativum HOM05D004235 ORTHO05D005157 2.4e-08 61.6 33 84.8
ATR0789G124 Amborella trichopoda HOM05D004235 ORTHO05D005157 3.2e-08 61.2 33 81.8
unitig_26.g9162 Utricularia gibba HOM05D004235 ORTHO05D005157 3.2e-08 61.2 33 81.8
DCAR_028630 Daucus carota HOM05D004235 ORTHO05D005157 4.1e-08 60.8 46 67.4
TPR.G25478 Trifolium pratense HOM05D004235 ORTHO05D005157 4.1e-08 60.8 33 81.8
Lalb_Chr09g0331731 Lupinus albus HOM05D004235 ORTHO05D005157 5.4e-08 60.5 33 84.8
FvH4_1g06790 Fragaria vesca HOM05D004235 ORTHO05D005157 7.1e-08 60.1 33 81.8
FAN19G3193 Fragaria x ananassa HOM05D004235 ORTHO05D005157 7.1e-08 60.1 33 81.8
FAN23G1406 Fragaria x ananassa HOM05D004235 ORTHO05D005157 7.1e-08 60.1 33 81.8
Ca_17388_v3 Cicer arietinum L. HOM05D004235 ORTHO05D005157 2.7e-07 58.2 33 78.8
SGA_v2.0_scaffold354G49755 Striga asiatica HOM05D004235 ORTHO05D005157 3.5e-07 57.8 33 78.8
Mapoly0007s0115 Marchantia polymorpha HOM05D004235 ORTHO05D005157 4.6e-07 57.4 45 62.2
Thecc.09G094500 Theobroma cacao HOM05D004235 ORTHO05D005157 7.8e-07 56.6 31 77.4
CBR_g39508 Chara braunii HOM05D004235 ORTHO05D005157 1.0e-06 56.2 33 69.7
Sc18g0001660 Simmondsia chinensis HOM05D004235 ORTHO05D005157 1.0e-06 56.2 33 72.7
SMO268G0025 Selaginella moellendorffii HOM05D004235 ORTHO05D005157 1.3e-06 55.8 55 45.5
Duzib168G1665 Durio zibethinus HOM05D004235 ORTHO05D005157 3.9e-06 54.3 31 74.2
Pp3c19_10200 Physcomitrium patens HOM05D004235 ORTHO05D005157 3.9e-06 54.3 33 66.7
Gohir.A08G244500 Gossypium hirsutum HOM05D004235 ORTHO05D005157 5.1e-06 53.9 31 71.0
Gohir.D08G265400 Gossypium hirsutum HOM05D004235 ORTHO05D005157 5.1e-06 53.9 31 71.0
Gorai.004G283400 Gossypium raimondii HOM05D004235 ORTHO05D005157 5.1e-06 53.9 31 71.0


User provided reference genes

Program Settings