Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.4e-20 102.1 52 100.0
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 1.8e-17 91.7 52 86.5
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 5.3e-17 90.1 52 84.6
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 7.0e-17 89.7 52 84.6
CSS0035617 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 4.5e-16 87.0 52 86.5
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 1.7e-15 85.1 53 84.9
CSS0021115 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.2e-15 84.7 52 82.7
CSS0041715 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.2e-15 84.7 51 86.3
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 2.9e-15 84.3 54 83.3
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 3.8e-15 84.0 52 75.0
CSS0044029 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 5.0e-15 83.6 52 82.7
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 8.5e-15 82.8 52 80.8
CSS0008945 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.1e-14 82.4 52 80.8
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 1.1e-14 82.4 52 78.8
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 2.5e-14 81.3 52 78.8
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 4.2e-14 80.5 52 71.2
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 4.2e-14 80.5 54 79.6
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 5.5e-14 80.1 52 75.0
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 5.5e-14 80.1 52 75.0
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 5.5e-14 80.1 52 78.8
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 1.2e-13 79.0 52 78.8
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 1.6e-13 78.6 52 71.2
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 2.1e-13 78.2 52 76.9
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 3.6e-13 77.4 52 71.2
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 4.7e-13 77.0 53 77.4
Sed0025799 Sechium edule HOM05D007824 ORTHO05D009875 6.1e-13 76.6 52 69.2
Glyma.04G059451 Glycine max HOM05D007824 ORTHO05D009875 3.0e-12 74.3 53 71.7
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 3.0e-12 74.3 48 72.9
unitig_46.g18221 Utricularia gibba HOM05D007824 ORTHO05D009875 5.2e-12 73.6 52 61.5
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 6.8e-12 73.2 54 72.2
Oeu006856.1 Olea europaea HOM05D007824 ORTHO05D009875 6.8e-12 73.2 49 73.5
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 6.8e-12 73.2 45 77.8
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 8.8e-12 72.8 52 69.2
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 1.2e-11 72.4 52 69.2
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 1.2e-11 72.4 52 69.2
Phvul.009G085600 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 1.2e-11 72.4 50 68.0
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 1.2e-11 72.4 52 65.4
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 2.6e-11 71.2 53 67.9
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 3.4e-11 70.9 52 65.4
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 4.4e-11 70.5 43 79.1
Glyma.06G059900 Glycine max HOM05D007824 ORTHO05D009875 5.7e-11 70.1 53 67.9
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 7.5e-11 69.7 55 67.3
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 7.5e-11 69.7 49 69.4
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 4.8e-10 67.0 42 71.4
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 8.3e-10 66.2 43 67.4
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 1.1e-09 65.9 42 69.0
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 1.8e-09 65.1 52 63.5
Medtr3g105765 Medicago truncatula HOM05D007824 ORTHO05D009875 4.1e-09 63.9 53 64.2
CARHR202570 Cardamine hirsuta HOM05D007824 ORTHO05D009875 7.0e-09 63.2 52 61.5
Thhalv10015471m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 7.0e-09 63.2 52 61.5
CSS0018794 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.0e-08 61.6 36 86.1
arahy.Tifrunner.gnm1.ann1.58R7DF Arachis hypogaea HOM05D007824 ORTHO05D009875 2.7e-08 61.2 36 77.8
arahy.Tifrunner.gnm1.ann1.A82CWH Arachis hypogaea HOM05D007824 ORTHO05D009875 2.7e-08 61.2 36 77.8
Zm00001eb221680 Zea mays HOM05D007824 ORTHO05D009875 2.7e-08 61.2 45 68.9
Glyma.17G221200 Glycine max HOM05D007824 ORTHO05D009875 3.5e-08 60.8 47 61.7
Lj5g0022212 Lotus japonicus HOM05D007824 ORTHO05D009875 4.5e-08 60.5 61 57.4
Medtr1g013350 Medicago truncatula HOM05D007824 ORTHO05D009875 5.9e-08 60.1 48 62.5
Solyc08g068930.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 5.9e-08 60.1 39 79.5
Glyma.14G104600 Glycine max HOM05D007824 ORTHO05D009875 1.7e-07 58.5 39 69.2
Os10g0478900 Oryza sativa ssp. japonica HOM05D007824 ORTHO05D009875 2.9e-07 57.8 44 63.6
AT5G10745 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 6.5e-07 56.6 54 59.3
BcaB01g06276 Brassica carinata HOM05D007824 ORTHO05D009875 8.5e-07 56.2 54 57.4
CSS0017526 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D111394 8.5e-07 56.2 51 66.7
AL6G21300 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 1.1e-06 55.8 54 59.3
Mapoly0056s0140 Marchantia polymorpha HOM05D007824 ORTHO05D009875 1.1e-06 55.8 49 59.2
TPR.G38894 Trifolium pratense HOM05D007824 ORTHO05D009875 1.1e-06 55.8 44 63.6
BcaB01g05502 Brassica carinata HOM05D007824 ORTHO05D009875 1.9e-06 55.1 54 57.4
A03p04740 Brassica napus HOM05D007824 ORTHO05D009875 1.9e-06 55.1 54 57.4
C03p05450 Brassica napus HOM05D007824 ORTHO05D009875 1.9e-06 55.1 54 57.4
BraA03t09814Z Brassica rapa HOM05D007824 ORTHO05D009875 1.9e-06 55.1 54 57.4
Thhalv10005256m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 1.9e-06 55.1 39 66.7
Carub.0006s0922 Capsella rubella HOM05D007824 ORTHO05D009875 2.5e-06 54.7 54 57.4
DCAR_000681 Daucus carota HOM05D007824 ORTHO05D009875 2.5e-06 54.7 53 60.4
Psat6g024640 Pisum sativum HOM05D007824 ORTHO05D009875 4.2e-06 53.9 42 64.3
HanXRQChr10g0282061 Helianthus annuus HOM05D046567 ORTHO05D048208 7.2e-06 53.1 50 56.0


User provided reference genes

Program Settings