Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 3.2e-162 575.1 302 100.0
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 2.1e-121 439.5 316 72.5
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 2.0e-108 396.4 274 75.5
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 2.0e-108 396.4 273 74.4
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 3.0e-104 382.5 383 59.5
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 6.8e-96 354.8 298 65.8
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.6e-95 352.8 300 65.7
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 1.0e-91 340.9 316 60.8
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 1.7e-91 340.1 316 61.1
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 6.5e-91 338.2 274 65.0
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 4.2e-90 335.5 305 61.0
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 1.5e-87 327.0 274 62.4
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 3.4e-87 325.9 301 59.8
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 4.4e-87 325.5 319 58.9
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 1.4e-85 320.5 295 60.7
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 7.0e-85 318.2 272 62.5
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 4.5e-84 315.5 294 59.5
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 7.7e-84 314.7 274 62.0
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 7.7e-84 314.7 294 58.5
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.7e-83 313.5 223 73.1
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 1.7e-83 313.5 274 61.7
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 2.3e-83 313.2 303 58.1
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 2.5e-82 309.7 309 57.3
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 4.2e-82 308.9 310 57.4
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 5.6e-82 308.5 316 56.6
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 2.8e-81 306.2 304 57.9
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 3.6e-81 305.8 308 57.8
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 6.1e-81 305.1 315 55.2
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 6.1e-81 305.1 311 57.2
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 4.0e-80 302.4 260 63.1
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 4.4e-79 298.9 303 56.8
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 9.8e-79 297.7 256 61.3
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 9.8e-79 297.7 274 59.5
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 1.7e-78 297.0 282 58.2
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 2.2e-78 296.6 292 56.2
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 6.4e-78 295.0 313 55.9
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 2.0e-76 290.0 268 59.0
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.9e-76 288.5 315 53.7
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 2.9e-75 286.2 274 55.8
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 8.6e-75 284.6 272 58.1
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.5e-74 283.9 302 53.6
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 3.3e-74 282.7 291 52.2
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 9.5e-74 281.2 298 56.4
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 2.1e-73 280.0 276 56.5
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 8.0e-73 278.1 271 56.1
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.4e-72 277.3 271 56.8
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.8e-72 276.9 271 57.9
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 5.2e-72 275.4 299 55.9
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 5.2e-72 275.4 279 53.8
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 5.2e-72 275.4 302 53.6
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 6.8e-72 275.0 303 51.8
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 8.9e-72 274.6 305 53.8
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.2e-71 274.2 271 56.8
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 1.2e-71 274.2 303 52.1
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 2.0e-71 273.5 273 54.6
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 2.0e-71 273.5 317 49.8
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 2.6e-71 273.1 274 55.5
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 3.4e-71 272.7 307 53.7
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 7.5e-71 271.6 316 52.2
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 7.5e-71 271.6 268 56.0
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 9.8e-71 271.2 291 54.3
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 9.8e-71 271.2 316 52.2
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.3e-70 270.8 268 56.3
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 2.9e-70 269.6 305 53.1
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 3.7e-70 269.2 323 47.1
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 4.9e-70 268.9 315 50.8
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 8.3e-70 268.1 272 54.8
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.2e-68 264.2 304 51.6
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 2.7e-68 263.1 326 49.4
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 1.0e-67 261.2 313 50.2
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 2.3e-67 260.0 270 54.1
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 8.6e-67 258.1 267 52.1
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 4.3e-66 255.8 298 49.3
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 1.2e-65 254.2 327 47.1
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 1.6e-65 253.8 267 52.1
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 1.6e-65 253.8 267 52.1
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 3.6e-65 252.7 277 53.4
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 1.4e-64 250.8 281 53.0
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 2.0e-63 246.9 306 47.1
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 2.0e-63 246.9 302 49.0
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 7.5e-63 245.0 291 53.3
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.1e-61 241.1 242 57.0
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 4.1e-61 239.2 254 52.4
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 9.2e-61 238.0 282 51.4
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.2e-60 237.7 303 47.5
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 3.5e-60 236.1 291 49.8
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.3e-59 234.2 255 52.5
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.7e-59 233.8 275 49.1
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 5.1e-59 232.3 313 44.7
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 8.6e-59 231.5 275 49.1
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 3.6e-57 226.1 313 45.0
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 2.3e-56 223.4 279 47.3
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 3.4e-55 219.5 286 46.5
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 2.2e-54 216.9 257 47.5
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 8.4e-54 214.9 185 60.5
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 1.9e-53 213.8 303 42.9
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 3.2e-53 213.0 254 48.0
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 5.1e-51 205.7 222 51.8
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 5.1e-51 205.7 266 46.2
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 7.3e-50 201.8 285 45.3
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 6.8e-48 195.3 277 43.3
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 7.8e-44 181.8 256 43.8
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 5.6e-42 175.6 204 52.5
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.8e-40 170.6 226 45.6
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 9.0e-40 168.3 206 52.4
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.3e-38 164.5 242 43.4
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 1.3e-38 164.5 135 61.5
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 1.4e-37 161.0 180 49.4
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 7.4e-34 148.7 275 39.6
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 1.0e-27 128.3 257 35.4
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.1e-26 124.8 146 47.3
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 4.9e-22 109.4 118 54.2
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 8.4e-22 108.6 134 47.8
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 4.2e-21 106.3 206 35.9
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 6.0e-20 102.4 206 36.9
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-18 97.8 118 49.2
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.5e-18 97.1 192 35.9
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 2.4e-16 90.5 169 37.9
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 6.9e-16 89.0 192 35.9
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 1.2e-15 88.2 221 33.0
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 2.6e-15 87.0 161 37.9
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.3e-14 84.7 77 54.5
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.2e-14 84.0 129 45.0
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 3.2e-13 80.1 65 66.2
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 5.5e-13 79.3 69 55.1
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 7.2e-13 79.0 86 45.3
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 9.3e-13 78.6 75 62.7
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 8.7e-11 72.0 163 33.1
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 1.1e-10 71.6 65 56.9
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.5e-10 70.5 42 85.7
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 4.3e-10 69.7 158 32.9
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 1.3e-09 68.2 158 34.2
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.8e-09 66.2 139 38.1
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.1e-08 65.1 92 43.5
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.1e-08 65.1 92 43.5
VMungo0720G0209 Vigna mungo HOM05D005448 ORTHO05D006405 2.4e-08 63.9 92 39.1
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 9.0e-08 62.0 77 49.4
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 9.0e-08 62.0 77 49.4
VMungo1309G2642 Vigna mungo HOM05D005448 ORTHO05D006405 4.5e-07 59.7 81 43.2


User provided reference genes

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