Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038488 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 4.8e-79 297.7 148 100.0
CSS0043490 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.3e-39 166.8 181 55.8
CSS0020228 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 8.3e-39 164.1 156 60.9
CSS0037655 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 9.2e-38 160.6 158 58.9
CSS0008944 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 2.0e-37 159.5 167 55.7
Rhsim03G0050200 Rhododendron simsii HOM05D002156 ORTHO05D002328 1.5e-24 116.7 87 70.1
Actinidia03928 Actinidia chinensis HOM05D002156 ORTHO05D002328 2.0e-24 116.3 152 50.0
Lj1A1067G36 Lonicera japonica HOM05D002156 ORTHO05D002328 4.4e-24 115.2 81 66.7
CSS0046058 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 2.2e-23 112.8 122 54.1
Hma1.2p1_1039F.1_g250900 Hydrangea macrophylla HOM05D002156 ORTHO05D002328 2.2e-23 112.8 76 68.4
vmacro07661 Vaccinium macrocarpon HOM05D002156 ORTHO05D002328 3.7e-23 112.1 87 67.8
CSS0001756 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 3.2e-22 109.0 142 51.4
CiPaw.09G168300 Carya illinoinensis HOM05D002156 ORTHO05D002328 5.4e-22 108.2 105 57.1
Gorai.013G195700 Gossypium raimondii HOM05D002156 ORTHO05D002328 3.0e-20 102.4 86 59.3
Gohir.A13G163900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 3.9e-20 102.1 86 59.3
Thecc.05G243200 Theobroma cacao HOM05D002156 ORTHO05D002328 3.9e-20 102.1 100 53.0
Duzib106G2010 Durio zibethinus HOM05D002156 ORTHO05D002328 6.6e-20 101.3 88 59.1
Gohir.D13G166800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.9e-19 99.8 86 58.1
arahy.Tifrunner.gnm1.ann1.7VP81J Arachis hypogaea HOM05D002156 ORTHO05D002328 2.5e-19 99.4 138 41.3
arahy.Tifrunner.gnm1.ann1.M0VUV2 Arachis hypogaea HOM05D002156 ORTHO05D002328 2.5e-19 99.4 138 41.3
Lj1g0011130 Lotus japonicus HOM05D002156 ORTHO05D002328 2.5e-19 99.4 76 59.2
Cfa017704 Carpinus fangiana HOM05D002156 ORTHO05D002328 4.3e-19 98.6 76 61.8
Haze_20432 Corylus avellana HOM05D002156 ORTHO05D002328 5.6e-19 98.2 87 56.3
Ciclev10019878m.g Citrus clementina HOM05D002156 ORTHO05D002328 7.3e-19 97.8 97 54.6
Lalb_Chr14g0364791 Lupinus albus HOM05D002156 ORTHO05D002328 7.3e-19 97.8 100 49.0
Duzib128G0733 Durio zibethinus HOM05D002156 ORTHO05D002328 9.5e-19 97.4 100 51.0
TWI32G0999 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 9.5e-19 97.4 87 59.8
COL.COLO4_28629 Corchorus olitorius HOM05D002156 ORTHO05D002328 1.6e-18 96.7 100 53.0
Ca_08306_v3 Cicer arietinum L. HOM05D002156 ORTHO05D002328 2.8e-18 95.9 96 49.0
GSVIVG01025814001 Vitis vinifera HOM05D002156 ORTHO05D002328 6.2e-18 94.7 76 63.2
Prupe.7G011900 Prunus persica HOM05D002156 ORTHO05D002328 8.1e-18 94.4 100 49.0
Gohir.D11G241900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.4e-17 93.6 76 59.2
Gorai.007G256200 Gossypium raimondii HOM05D002156 ORTHO05D002328 1.4e-17 93.6 76 59.2
TWI34G0345 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 1.8e-17 93.2 87 56.3
MD09G1231100 Malus domestica HOM05D002156 ORTHO05D002328 2.3e-17 92.8 87 51.7
MD14G1007100 Malus domestica HOM05D002156 ORTHO05D002328 3.1e-17 92.4 87 52.9
Cc06_g17240 Coffea canephora HOM05D002156 ORTHO05D002328 5.2e-17 91.7 101 50.5
Gohir.A11G230100 Gossypium hirsutum HOM05D002156 ORTHO05D002328 5.2e-17 91.7 76 57.9
Atru.chr2.1496 Acer truncatum HOM05D002156 ORTHO05D002328 6.8e-17 91.3 88 54.5
Eucgr.A02134 Eucalyptus grandis HOM05D002156 ORTHO05D002328 6.8e-17 91.3 82 57.3
HanXRQChr11g0348131 Helianthus annuus HOM05D002156 ORTHO05D002328 6.8e-17 91.3 92 54.3
Medtr7g086460 Medicago truncatula HOM05D002156 ORTHO05D002328 6.8e-17 91.3 76 56.6
MD12G1009900 Malus domestica HOM05D002156 ORTHO05D002328 8.9e-17 90.9 87 50.6
QL07p017931 Quercus lobata HOM05D002156 ORTHO05D002328 1.2e-16 90.5 105 47.6
PSO384G2429 Papaver somniferum HOM05D002156 ORTHO05D002328 2.6e-16 89.4 94 50.0
RcHm_v2.0_Chr3g0496221 Rosa chinensis HOM05D002156 ORTHO05D002328 3.4e-16 89.0 89 50.6
Glyma.19G116100 Glycine max HOM05D002156 ORTHO05D002328 5.8e-16 88.2 76 57.9
Sc07g0007830 Simmondsia chinensis HOM05D002156 ORTHO05D002328 5.8e-16 88.2 88 52.3
TPR.G17860 Trifolium pratense HOM05D002156 ORTHO05D002328 5.8e-16 88.2 76 56.6
Glyma.16G037000 Glycine max HOM05D002156 ORTHO05D002328 7.5e-16 87.8 76 55.3
PGR042G0405 Punica granatum HOM05D002156 ORTHO05D002328 9.9e-16 87.4 82 53.7
Cpa.g.sc161.28 Carica papaya HOM05D002156 ORTHO05D002328 1.3e-15 87.0 87 47.1
Nn2g14545 Nelumbo nucifera HOM05D002156 ORTHO05D002328 2.2e-15 86.3 87 51.7
Psat3g087320 Pisum sativum HOM05D002156 ORTHO05D002328 4.9e-15 85.1 77 54.5
Potri.019G039300 Populus trichocarpa HOM05D002156 ORTHO05D002328 4.9e-15 85.1 87 50.6
VMungo1383G3546 Vigna mungo HOM05D002156 ORTHO05D002328 4.9e-15 85.1 76 53.9
Lsat_1_v5_gn_1_55260 Lactuca sativa HOM05D002156 ORTHO05D002328 6.4e-15 84.7 91 51.6
DCAR_020655 Daucus carota HOM05D002156 ORTHO05D002328 8.3e-15 84.3 87 50.6
Sabra13G0056700 Salix brachista HOM05D002156 ORTHO05D002328 8.3e-15 84.3 100 43.0
FvH4_1g28540 Fragaria vesca HOM05D002156 ORTHO05D002328 1.4e-14 83.6 87 49.4
FAN19G2483 Fragaria x ananassa HOM05D002156 ORTHO05D002328 1.4e-14 83.6 87 49.4
MD12G1009700 Malus domestica HOM05D002156 ORTHO05D002328 4.1e-14 82.0 87 49.4
HanXRQChr07g0197191 Helianthus annuus HOM05D002156 ORTHO05D002328 1.2e-13 80.5 91 48.4
FAN23G2882 Fragaria x ananassa HOM05D002156 ORTHO05D002328 1.6e-13 80.1 87 49.4
Lsat_1_v5_gn_2_103620 Lactuca sativa HOM05D002156 ORTHO05D002328 1.6e-13 80.1 94 47.9
Potri.013G064800 Populus trichocarpa HOM05D002156 ORTHO05D002328 1.6e-13 80.1 87 47.1
TAR623G0551 Trochodendron aralioides HOM05D002156 ORTHO05D002328 2.1e-13 79.7 87 48.3
Phvul.001G115500 Phaseolus vulgaris HOM05D002156 ORTHO05D002328 3.5e-13 79.0 76 52.6
MELO3C008849.2 Cucumis melo HOM05D002156 ORTHO05D002328 7.8e-13 77.8 88 47.7
ECA248G3031 Erigeron canadensis HOM05D002156 ORTHO05D002328 7.8e-13 77.8 96 49.0
Manes.08G153900 Manihot esculenta HOM05D002156 ORTHO05D002328 7.8e-13 77.8 76 53.9
CsaV3_4G011990 Cucumis sativus L. HOM05D002156 ORTHO05D002328 1.0e-12 77.4 88 46.6
Aqoxy1G00521 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 1.3e-12 77.0 77 51.9
EL10Ac5g11718 Beta vulgaris HOM05D002156 ORTHO05D002328 1.7e-12 76.6 88 47.7
THA.LOC104800404 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 1.7e-12 76.6 96 41.7
THA.LOC104821409 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 1.7e-12 76.6 83 47.0
THA.LOC104800077 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 2.3e-12 76.3 96 40.6
ClCG04G004550 Citrullus lanatus HOM05D002156 ORTHO05D002328 5.1e-12 75.1 87 46.0
Oeu056497.3 Olea europaea HOM05D002156 ORTHO05D002328 6.6e-12 74.7 100 46.0
arahy.Tifrunner.gnm1.ann1.0R4MPN Arachis hypogaea HOM05D002156 ORTHO05D002328 1.1e-11 73.9 98 38.8
AUR62036257 Chenopodium quinoa HOM05D002156 ORTHO05D002328 2.5e-11 72.8 88 45.5
Sed0023631 Sechium edule HOM05D002156 ORTHO05D002328 3.3e-11 72.4 88 45.5
Sed0005796 Sechium edule HOM05D002156 ORTHO05D002328 4.3e-11 72.0 77 49.4
Nitab4.5_0001720g0020 Nicotiana tabacum HOM05D002156 ORTHO05D002328 5.6e-11 71.6 92 45.7
Oeu032944.1 Olea europaea HOM05D002156 ORTHO05D002328 7.3e-11 71.2 100 45.0
arahy.Tifrunner.gnm1.ann1.4I7PBY Arachis hypogaea HOM05D002156 ORTHO05D002328 1.2e-10 70.5 89 39.3
arahy.Tifrunner.gnm1.ann1.A9N3QV Arachis hypogaea HOM05D002156 ORTHO05D002328 2.1e-10 69.7 92 39.1
Peaxi162Scf01344g00018 Petunia axillaris HOM05D002156 ORTHO05D002328 2.1e-10 69.7 76 47.4
CDE05G3656 Ceratophyllum demersum HOM05D002156 ORTHO05D002328 2.8e-10 69.3 94 41.5
Aa31LG2G1840 Aethionema arabicum HOM05D002156 ORTHO05D002328 3.6e-10 68.9 77 42.9
AUR62038448 Chenopodium quinoa HOM05D002156 ORTHO05D002328 3.6e-10 68.9 88 44.3
Nitab4.5_0000098g0160 Nicotiana tabacum HOM05D002156 ORTHO05D002328 4.7e-10 68.6 92 43.5
Hund22589 Selenicereus undatus HOM05D002156 ORTHO05D002328 8.1e-10 67.8 85 48.2
Aqoxy2G00573 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 1.1e-09 67.4 87 41.4
arahy.Tifrunner.gnm1.ann1.ZF4CS3 Arachis hypogaea HOM05D002156 ORTHO05D002328 1.4e-09 67.0 79 41.8
Sopen01g021430 Solanum pennellii HOM05D002156 ORTHO05D002328 1.4e-09 67.0 87 42.5
Solyc01g057090.4 Solanum lycopersicum HOM05D002156 ORTHO05D002328 1.8e-09 66.6 87 42.5
CAN.G752.1 Capsicum annuum HOM05D002156 ORTHO05D002328 4.0e-09 65.5 81 45.7
Zm00001eb052850 Zea mays HOM05D002156 ORTHO05D002328 4.0e-09 65.5 80 43.8
A07p31440 Brassica napus HOM05D002156 ORTHO05D002328 5.2e-09 65.1 110 37.3
BraA07t30779Z Brassica rapa HOM05D002156 ORTHO05D002328 5.2e-09 65.1 110 37.3
SalBow1G7226 Salvia bowleyana HOM05D002156 ORTHO05D002328 8.9e-09 64.3 70 50.0
PGSC0003DMG400013066 Solanum tuberosum HOM05D002156 ORTHO05D002328 2.0e-08 63.2 87 40.2
HanXRQChr01g0026721 Helianthus annuus HOM05D002156 ORTHO05D029280 2.6e-08 62.8 87 41.4
BcaB03g15489 Brassica carinata HOM05D002156 ORTHO05D002328 4.4e-08 62.0 46 54.3
Thhalv10018456m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 9.9e-08 60.8 46 54.3
MSTRG.10750 Avicennia marina HOM05D002156 ORTHO05D002328 1.3e-07 60.5 94 41.5
Os03g0654500 Oryza sativa ssp. japonica HOM05D002156 ORTHO05D002328 1.3e-07 60.5 76 42.1
C06p36730 Brassica napus HOM05D002156 ORTHO05D002328 1.7e-07 60.1 46 56.5
BolC6t38783H Brassica oleracea HOM05D002156 ORTHO05D002328 1.7e-07 60.1 46 56.5
SGA_v2.0_scaffold17G07976 Striga asiatica HOM05D002156 ORTHO05D002328 1.7e-07 60.1 94 41.5
ATR0618G027 Amborella trichopoda HOM05D002156 ORTHO05D002328 2.9e-07 59.3 93 38.7
Sp5g24790 Schrenkiella parvula HOM05D002156 ORTHO05D002328 2.9e-07 59.3 46 50.0
BcaC08g45876 Brassica carinata HOM05D002156 ORTHO05D002328 4.9e-07 58.5 46 56.5
HanXRQChr01g0026731 Helianthus annuus HOM05D002156 ORTHO05D029280 6.4e-07 58.2 89 37.1
ECA232G4690 Erigeron canadensis HOM05D000927 ORTHO05D029280 2.4e-06 56.2 102 35.3
CARHR028160 Cardamine hirsuta HOM05D002156 ORTHO05D002328 3.2e-06 55.8 46 52.2
HPP92_012146 Vanilla planifolia HOM05D002156 ORTHO05D002328 4.2e-06 55.5 93 36.6
AL1G42570 Arabidopsis lyrata HOM05D002156 ORTHO05D002328 7.1e-06 54.7 46 56.5
AT1G28760 Arabidopsis thaliana HOM05D002156 ORTHO05D002328 7.1e-06 54.7 46 56.5
Carub.0001s2716 Capsella rubella HOM05D002156 ORTHO05D002328 7.1e-06 54.7 46 56.5


User provided reference genes

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