Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 2.9e-43 178.3 101 100.0
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 3.9e-24 114.8 95 72.6
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 1.3e-22 109.8 101 66.3
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 1.7e-22 109.4 101 65.3
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 2.8e-22 108.6 96 74.0
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 9.1e-21 103.6 101 63.4
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 9.1e-21 103.6 101 63.4
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 2.6e-20 102.1 104 60.6
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 2.6e-20 102.1 102 63.7
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 3.4e-20 101.7 86 68.6
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 4.5e-20 101.3 101 62.4
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 2.2e-19 99.0 105 63.8
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 2.2e-19 99.0 101 60.4
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 2.9e-19 98.6 101 61.4
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 2.9e-19 98.6 103 64.1
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 2.9e-19 98.6 95 64.2
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 5.0e-19 97.8 102 63.7
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 6.5e-19 97.4 102 63.7
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 1.4e-18 96.3 104 61.5
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 1.9e-18 95.9 102 61.8
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 3.2e-18 95.1 101 64.4
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 4.2e-18 94.7 102 57.8
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 5.5e-18 94.4 101 60.4
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 7.2e-18 94.0 101 61.4
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.6e-17 92.8 101 59.4
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 1.6e-17 92.8 101 61.4
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 1.6e-17 92.8 101 59.4
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 2.1e-17 92.4 101 63.4
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 2.1e-17 92.4 101 61.4
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 2.7e-17 92.0 99 62.6
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 2.7e-17 92.0 104 61.5
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 3.6e-17 91.7 107 61.7
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 3.6e-17 91.7 107 61.7
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 4.7e-17 91.3 102 62.7
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 7.9e-17 90.5 95 65.3
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 1.0e-16 90.1 102 59.8
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 1.0e-16 90.1 102 59.8
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.8e-16 89.4 95 58.9
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 2.3e-16 89.0 98 58.2
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 2.3e-16 89.0 98 59.2
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 3.0e-16 88.6 104 58.7
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 3.9e-16 88.2 101 57.4
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 5.1e-16 87.8 95 57.9
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 6.7e-16 87.4 101 57.4
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 6.7e-16 87.4 101 59.4
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 6.7e-16 87.4 96 62.5
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 8.8e-16 87.0 94 58.5
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 1.1e-15 86.7 101 58.4
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 1.5e-15 86.3 99 58.6
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 1.5e-15 86.3 105 60.0
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 1.5e-15 86.3 98 57.1
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 1.5e-15 86.3 95 57.9
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 1.5e-15 86.3 99 56.6
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 2.0e-15 85.9 101 55.4
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 2.6e-15 85.5 96 58.3
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 7.4e-15 84.0 95 60.0
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 7.4e-15 84.0 101 55.4
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 9.7e-15 83.6 102 55.9
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 1.3e-14 83.2 98 57.1
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 1.3e-14 83.2 102 54.9
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 2.2e-14 82.4 100 55.0
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 2.8e-14 82.0 103 55.3
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 8.2e-14 80.5 113 54.9
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 1.1e-13 80.1 95 56.8
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 1.4e-13 79.7 94 56.4
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 1.4e-13 79.7 103 61.2
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 1.8e-13 79.3 58 72.4
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 2.4e-13 79.0 95 55.8
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 3.1e-13 78.6 98 56.1
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 7.0e-13 77.4 94 57.4
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 1.6e-12 76.3 94 56.4
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 1.6e-12 76.3 94 56.4
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 2.0e-12 75.9 95 54.7
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 2.6e-12 75.5 95 50.5
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 2.6e-12 75.5 101 55.4
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 2.6e-12 75.5 102 51.0
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 2.6e-12 75.5 102 57.8
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 3.5e-12 75.1 98 54.1
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 4.5e-12 74.7 88 58.0
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 7.7e-12 73.9 103 59.2
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 1.0e-11 73.6 95 52.6
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 1.3e-11 73.2 102 53.9
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 2.2e-11 72.4 53 71.7
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 2.9e-11 72.0 58 72.4
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 5.0e-11 71.2 95 53.7
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 8.5e-11 70.5 95 49.5
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 8.5e-11 70.5 95 49.5
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 1.1e-10 70.1 95 49.5
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 1.5e-10 69.7 96 51.0
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 1.5e-10 69.7 96 51.0
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 1.9e-10 69.3 91 51.6
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 2.5e-10 68.9 98 46.9
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 3.2e-10 68.6 92 48.9
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 7.2e-10 67.4 89 50.6
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 7.2e-10 67.4 99 50.5
Actinidia20387 Actinidia chinensis HOM05D007491 ORTHO05D009489 3.0e-08 62.0 55 76.4
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 6.7e-08 60.8 93 46.2
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 6.7e-08 60.8 78 48.7
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 8.8e-08 60.5 78 48.7
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 2.0e-07 59.3 93 50.5
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.6e-07 58.9 84 42.9
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.6e-07 58.9 84 42.9
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 3.3e-07 58.5 83 42.2
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 3.3e-07 58.5 81 43.2
Hund19532 Selenicereus undatus HOM05D007491 ORTHO05D009489 3.3e-07 58.5 102 46.1
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 4.4e-07 58.2 97 39.2
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 5.7e-07 57.8 87 51.7
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 7.5e-07 57.4 49 61.2
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 9.7e-07 57.0 81 38.3
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 9.7e-07 57.0 99 38.4
SHI47168 Sapria himalayana HOM05D007491 ORTHO05D009489 9.7e-07 57.0 102 43.1
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 1.3e-06 56.6 101 43.6
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 1.7e-06 56.2 95 45.3
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 2.2e-06 55.8 87 43.7
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 2.8e-06 55.5 82 43.9
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 2.8e-06 55.5 82 45.1
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 3.7e-06 55.1 65 41.5
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 3.7e-06 55.1 60 53.3
EL10Ac2g04054 Beta vulgaris HOM05D007491 ORTHO05D009489 4.8e-06 54.7 94 46.8
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 6.3e-06 54.3 94 38.3
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 6.3e-06 54.3 94 38.3
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 6.3e-06 54.3 81 37.0
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 8.2e-06 53.9 99 36.4
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 8.2e-06 53.9 62 50.0


User provided reference genes

Program Settings