Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 2.5e-35 151.4 67 100.0
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 6.4e-23 110.2 65 67.7
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 1.2e-21 105.9 63 69.8
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 2.3e-20 101.7 61 68.9
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 3.9e-20 100.9 63 69.8
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.9e-20 100.9 46 82.6
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 3.9e-20 100.9 53 73.6
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 5.1e-20 100.5 45 84.4
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 5.1e-20 100.5 45 84.4
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 5.1e-20 100.5 64 65.6
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 6.7e-20 100.1 46 82.6
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 6.7e-20 100.1 60 66.7
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 1.1e-19 99.4 68 63.2
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 1.9e-19 98.6 46 78.3
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.9e-19 98.6 61 60.7
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 2.5e-19 98.2 45 80.0
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 2.5e-19 98.2 63 63.5
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 3.3e-19 97.8 60 63.3
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 3.3e-19 97.8 62 61.3
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 4.3e-19 97.4 57 70.2
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 4.3e-19 97.4 63 65.1
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 4.3e-19 97.4 45 82.2
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 7.4e-19 96.7 61 62.3
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 7.4e-19 96.7 64 62.5
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 9.6e-19 96.3 67 59.7
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 9.6e-19 96.3 54 68.5
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 1.6e-18 95.5 60 60.0
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 1.6e-18 95.5 53 67.9
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.1e-18 95.1 46 73.9
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.1e-18 95.1 46 73.9
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.1e-18 95.1 46 73.9
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 3.6e-18 94.4 45 75.6
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 3.6e-18 94.4 61 62.3
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 3.6e-18 94.4 68 61.8
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 1.8e-17 92.0 65 60.0
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 2.4e-17 91.7 54 68.5
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 2.4e-17 91.7 45 75.6
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 4.0e-17 90.9 61 57.4
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 6.9e-17 90.1 45 73.3
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 5.8e-16 87.0 60 56.7
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 5.8e-16 87.0 60 56.7
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 5.8e-16 87.0 69 53.6
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 1.3e-15 85.9 63 58.7
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.9e-14 82.0 43 65.1
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 2.4e-14 81.6 70 52.9
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 3.2e-14 81.3 61 54.1
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 5.5e-14 80.5 62 51.6
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 2.1e-13 78.6 43 65.1
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 6.0e-13 77.0 62 50.0
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 7.9e-13 76.6 61 50.8
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 1.0e-12 76.3 62 48.4
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.8e-12 75.5 58 48.3
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 1.8e-12 75.5 43 58.1
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 2.3e-12 75.1 43 58.1
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 2.3e-12 75.1 43 58.1
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 3.9e-12 74.3 59 50.8
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.9e-12 74.3 43 60.5
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.9e-12 74.3 43 60.5
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.9e-12 74.3 43 60.5
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 5.1e-12 73.9 43 58.1
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 5.1e-12 73.9 45 55.6
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 5.1e-12 73.9 43 58.1
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 5.1e-12 73.9 43 58.1
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 5.1e-12 73.9 43 58.1
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 5.1e-12 73.9 65 40.0
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 8.7e-12 73.2 43 55.8
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 8.7e-12 73.2 43 55.8
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.9e-11 72.0 63 47.6
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 3.3e-11 71.2 45 48.9
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 3.3e-11 71.2 66 39.4
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 4.3e-11 70.9 43 53.5
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 4.3e-11 70.9 43 55.8
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 5.6e-11 70.5 43 55.8
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 5.6e-11 70.5 59 44.1
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 5.6e-11 70.5 43 53.5
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 7.4e-11 70.1 43 55.8
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 9.6e-11 69.7 62 46.8
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 9.6e-11 69.7 43 51.2
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.3e-10 69.3 63 41.3
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.6e-10 68.9 43 53.5
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.6e-10 68.9 60 46.7
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.1e-10 68.6 43 51.2
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.1e-10 68.6 62 45.2
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 2.8e-10 68.2 63 46.0
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 8.2e-10 66.6 57 45.6
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.1e-09 66.2 66 42.4
CiPaw.01G029300 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.4e-09 65.9 44 65.9
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.8e-09 65.5 57 43.9
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.8e-09 65.5 57 43.9
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 1.8e-09 65.5 57 43.9
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 1.5e-08 62.4 63 34.9
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 2.6e-08 61.6 42 45.2
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.6e-08 61.6 49 53.1
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.3e-07 59.3 44 54.5


User provided reference genes

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