Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 5.4e-87 324.3 167 100.0
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.4e-74 283.1 168 85.7
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 2.6e-73 278.9 166 83.7
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.8e-72 275.0 193 75.6
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 3.8e-72 275.0 163 85.3
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 1.9e-71 272.7 167 80.8
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.4e-71 272.3 165 82.4
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 2.4e-71 272.3 165 83.0
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 3.2e-71 271.9 165 82.4
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 4.2e-71 271.6 165 82.4
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 5.4e-71 271.2 167 81.4
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 1.2e-70 270.0 167 81.4
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.6e-70 269.6 167 78.4
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 2.1e-70 269.2 167 78.4
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 2.1e-70 269.2 170 80.0
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.5e-70 268.5 165 81.8
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 7.8e-70 267.3 165 81.8
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.0e-69 266.9 167 77.8
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 2.3e-69 265.8 166 78.9
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 3.0e-69 265.4 166 78.9
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 3.0e-69 265.4 167 78.4
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 5.1e-69 264.6 166 80.1
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 5.1e-69 264.6 167 79.6
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 6.6e-69 264.2 166 78.3
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 6.6e-69 264.2 167 80.8
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 6.6e-69 264.2 167 77.8
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 8.7e-69 263.8 167 79.6
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 1.1e-68 263.5 167 79.0
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 1.5e-68 263.1 167 77.8
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 1.9e-68 262.7 158 82.9
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 2.5e-68 262.3 166 80.1
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 4.3e-68 261.5 167 78.4
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 9.6e-68 260.4 167 76.6
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 1.3e-67 260.0 167 78.4
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.3e-67 260.0 167 78.4
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.3e-67 260.0 167 78.4
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.3e-67 260.0 153 84.3
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 1.3e-67 260.0 167 78.4
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 1.6e-67 259.6 166 77.1
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 1.6e-67 259.6 167 76.0
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 1.6e-67 259.6 166 78.3
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 2.1e-67 259.2 167 77.8
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 2.1e-67 259.2 167 76.0
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 2.8e-67 258.8 167 77.8
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 2.8e-67 258.8 166 76.5
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 3.6e-67 258.5 166 80.1
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.8e-67 258.1 167 77.8
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 6.2e-67 257.7 164 79.3
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 6.2e-67 257.7 166 77.7
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 1.1e-66 256.9 167 74.9
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 1.4e-66 256.5 204 68.1
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 3.1e-66 255.4 166 75.9
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 4.0e-66 255.0 166 76.5
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 1.2e-65 253.4 166 77.1
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 1.5e-65 253.1 166 75.3
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 2.0e-65 252.7 162 77.2
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 2.0e-65 252.7 169 75.1
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 2.0e-65 252.7 166 75.9
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 2.6e-65 252.3 167 74.9
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 2.6e-65 252.3 167 74.9
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 2.6e-65 252.3 167 74.9
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 2.6e-65 252.3 167 74.9
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 3.4e-65 251.9 167 74.9
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 3.4e-65 251.9 163 76.1
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 9.9e-65 250.4 169 75.1
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.7e-64 249.6 169 74.6
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 2.4e-63 245.7 167 72.5
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 4.2e-63 245.0 189 68.3
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 5.4e-63 244.6 164 74.4
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 1.2e-62 243.4 167 73.7
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.6e-62 243.0 167 72.5
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 7.9e-62 240.7 162 74.1
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.0e-61 240.4 154 76.6
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.8e-61 239.6 191 66.5
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 1.8e-61 239.6 168 72.6
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 3.0e-61 238.8 161 73.9
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 8.7e-61 237.3 159 74.8
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.5e-60 236.5 149 77.9
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.3e-59 233.4 138 84.1
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 2.1e-59 232.6 117 100.0
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 1.1e-58 230.3 166 65.1
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.7e-56 223.0 167 63.5
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 1.2e-54 216.9 140 75.7
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 7.9e-54 214.2 137 74.5
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 5.1e-53 211.5 190 58.9
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.1e-52 210.3 165 63.6
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.9e-52 209.5 163 63.8
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.9e-52 209.5 163 63.8
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 5.6e-52 208.0 139 71.9
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 9.6e-52 207.2 163 62.6
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 1.3e-51 206.8 118 85.6
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.1e-51 206.1 174 64.9
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 2.8e-51 205.7 161 64.6
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.1e-50 203.8 163 62.6
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 1.8e-50 203.0 136 70.6
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 4.0e-50 201.8 124 81.5
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 5.3e-50 201.4 157 62.4
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 2.0e-49 199.5 116 83.6
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.6e-49 197.6 167 57.5
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 1.0e-48 197.2 137 68.6
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.0e-48 197.2 127 76.4
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.7e-48 196.4 127 71.7
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.2e-48 196.1 134 70.9
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.2e-48 196.1 167 57.5
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 6.5e-48 194.5 165 55.8
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 6.5e-48 194.5 165 55.8
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 8.4e-48 194.1 165 55.2
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 8.4e-48 194.1 165 55.2
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 1.1e-47 193.7 165 57.6
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.1e-47 191.0 167 55.7
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.1e-46 189.5 167 56.3
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 2.7e-46 189.1 165 54.5
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 4.6e-46 188.3 150 56.7
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.9e-45 185.3 165 53.3
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 5.7e-44 181.4 116 75.0
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 7.4e-44 181.0 116 75.9
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 9.7e-44 180.6 137 58.4
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 9.7e-44 180.6 121 76.0
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 5.3e-42 174.9 138 65.9
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 7.4e-36 154.5 122 63.1
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 4.8e-35 151.8 88 84.1
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.8e-34 149.8 162 51.2
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 5.3e-34 148.3 167 47.9
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 2.0e-33 146.4 163 47.9
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 3.4e-33 145.6 118 61.0
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 3.8e-32 142.1 167 44.3
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 5.0e-32 141.7 132 54.5
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 7.2e-31 137.9 128 58.6
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 1.6e-30 136.7 146 47.9
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.1e-30 136.3 134 58.2
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.7e-30 136.0 123 54.5
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.4e-29 133.7 118 54.2
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 4.8e-27 125.2 76 78.9
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 2.0e-25 119.8 84 72.6
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 3.4e-25 119.0 73 79.5
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.5e-25 118.6 167 45.5
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 6.1e-22 108.2 103 51.5
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 3.9e-21 105.5 76 61.8
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 3.9e-21 105.5 76 61.8
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 3.9e-21 105.5 76 61.8
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.1e-20 104.0 71 67.6
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.2e-19 99.8 99 54.5
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.2e-19 97.8 160 38.1
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 5.3e-18 95.1 57 71.9
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 1.2e-17 94.0 167 39.5
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 6.5e-16 88.2 75 64.0
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 4.2e-15 85.5 75 62.7
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.2e-14 84.0 59 67.8
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.5e-12 77.0 58 63.8
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 2.0e-12 76.6 54 70.4
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.6e-12 76.3 48 83.3
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 3.3e-12 75.9 50 76.0
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 4.4e-12 75.5 49 75.5
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.8e-10 70.1 54 64.8
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.5e-07 59.7 43 76.7


User provided reference genes

Program Settings