Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038414 Camellia sinensis var. sinensis HOM05D007510 ORTHO05D009587 4.4e-80 301.2 151 100.0
Actinidia26112 Actinidia chinensis HOM05D007510 ORTHO05D009587 3.9e-28 128.6 148 52.0
Dinv40044 Davidia involucrata HOM05D007510 ORTHO05D009587 1.3e-26 123.6 129 55.0
vmacro22104 Vaccinium macrocarpon HOM05D007510 ORTHO05D009587 1.7e-26 123.2 150 52.0
Rhsim08G0036700 Rhododendron simsii HOM05D007510 ORTHO05D009587 5.9e-24 114.8 150 51.3
SalBow5G2055 Salvia bowleyana HOM05D007510 ORTHO05D009587 3.6e-21 105.5 131 48.1
Nitab4.5_0002266g0030 Nicotiana tabacum HOM05D007510 ORTHO05D009587 2.8e-18 95.9 121 43.0
Haze_03821 Corylus avellana HOM05D007510 ORTHO05D009587 4.8e-18 95.1 149 47.0
Cfa006928 Carpinus fangiana HOM05D007510 ORTHO05D009587 8.2e-18 94.4 133 51.1
CiPaw.04G025800 Carya illinoinensis HOM05D007510 ORTHO05D009587 2.4e-17 92.8 119 50.4
CiPaw.08G136300 Carya illinoinensis HOM05D007510 ORTHO05D009587 4.1e-17 92.0 117 49.6
Lsat_1_v5_gn_4_151140 Lactuca sativa HOM05D007510 ORTHO05D009587 4.1e-17 92.0 66 65.2
Aa31LG1G14840 Aethionema arabicum HOM05D007510 ORTHO05D009587 9.1e-17 90.9 124 40.3
ClCG01G020060 Citrullus lanatus HOM05D007510 ORTHO05D000703 9.1e-17 90.9 71 60.6
Nn6g32199 Nelumbo nucifera HOM05D007510 ORTHO05D009587 9.1e-17 90.9 99 50.5
Oeu037724.1 Olea europaea HOM05D007510 ORTHO05D009587 1.6e-16 90.1 110 47.3
Oeu037725.1 Olea europaea HOM05D007510 ORTHO05D009587 2.0e-16 89.7 110 47.3
Migut.H02491 Erythranthe guttata HOM05D007510 ORTHO05D009587 3.5e-16 89.0 124 41.9
MELO3C007880.2 Cucumis melo HOM05D007510 ORTHO05D009587 4.5e-16 88.6 47 78.7
ECA232G0818 Erigeron canadensis HOM05D001094 ORTHO05D001050 4.5e-16 88.6 80 55.0
CsaV3_6G046830 Cucumis sativus L. HOM05D007510 ORTHO05D009587 5.9e-16 88.2 43 83.7
BcaNung00409 Brassica carinata HOM05D007510 ORTHO05D009587 1.3e-15 87.0 74 60.8
TPR.G21530 Trifolium pratense HOM05D007510 ORTHO05D009587 1.3e-15 87.0 55 63.6
CAN.G358.14 Capsicum annuum HOM05D007510 ORTHO05D009587 1.7e-15 86.7 136 36.8
HanXRQChr11g0325681 Helianthus annuus HOM05D007510 ORTHO05D009587 2.2e-15 86.3 82 56.1
AT5G17280 Arabidopsis thaliana HOM05D007510 ORTHO05D009587 2.9e-15 85.9 58 69.0
Solyc02g084650.3 Solanum lycopersicum HOM05D007510 ORTHO05D009587 3.8e-15 85.5 126 38.9
A02p04090 Brassica napus HOM05D007510 ORTHO05D009587 5.0e-15 85.1 80 55.0
Ciclev10026716m.g Citrus clementina HOM05D007510 ORTHO05D009587 6.5e-15 84.7 155 34.8
Nitab4.5_0012525g0020 Nicotiana tabacum HOM05D007510 ORTHO05D009587 6.5e-15 84.7 125 40.0
Sopen02g029320 Solanum pennellii HOM05D007510 ORTHO05D009587 6.5e-15 84.7 126 38.9
AL6G28360 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 8.5e-15 84.3 137 40.9
Sp6g26950 Schrenkiella parvula HOM05D007510 ORTHO05D009587 8.5e-15 84.3 57 66.7
Hma1.2p1_0266F.1_g107010 Hydrangea macrophylla HOM05D007510 ORTHO05D009587 1.5e-14 83.6 88 52.3
unitig_27.g25318 Utricularia gibba HOM05D007510 ORTHO05D009587 1.9e-14 83.2 118 44.1
VMungo0251G3154 Vigna mungo HOM05D007510 ORTHO05D009587 1.9e-14 83.2 49 65.3
A10p22120 Brassica napus HOM05D007510 ORTHO05D009587 2.5e-14 82.8 52 71.2
BraA10t44271Z Brassica rapa HOM05D007510 ORTHO05D009587 2.5e-14 82.8 52 71.2
Carub.0006s1547 Capsella rubella HOM05D007510 ORTHO05D009587 2.5e-14 82.8 113 46.0
BraA02t05372Z Brassica rapa HOM05D007510 ORTHO05D009587 4.2e-14 82.0 80 50.0
HanXRQChr15g0494821 Helianthus annuus HOM05D007510 ORTHO05D009587 5.5e-14 81.6 119 46.2
Sc16g0002400 Simmondsia chinensis HOM05D007510 ORTHO05D009587 5.5e-14 81.6 117 42.7
Lalb_Chr05g0229951 Lupinus albus HOM05D007510 ORTHO05D009587 7.2e-14 81.3 59 55.9
QL06p034549 Quercus lobata HOM05D007510 ORTHO05D009587 7.2e-14 81.3 152 44.7
PGSC0003DMG400003618 Solanum tuberosum HOM05D007510 ORTHO05D009587 7.2e-14 81.3 48 68.8
Medtr8g076660 Medicago truncatula HOM05D007510 ORTHO05D009587 9.4e-14 80.9 57 59.6
Aa31LG11G5850 Aethionema arabicum HOM05D007510 ORTHO05D009587 1.2e-13 80.5 151 38.4
C09p59910 Brassica napus HOM05D007510 ORTHO05D009587 1.2e-13 80.5 49 71.4
BolC9t58827H Brassica oleracea HOM05D007510 ORTHO05D009587 1.2e-13 80.5 49 71.4
COL.COLO4_21980 Corchorus olitorius HOM05D001094 ORTHO05D001050 1.2e-13 80.5 59 62.7
Nn5g29177 Nelumbo nucifera HOM05D007510 ORTHO05D009587 1.6e-13 80.1 107 45.8
BcaB08g36792 Brassica carinata HOM05D007510 ORTHO05D009587 2.1e-13 79.7 49 69.4
BcaC04g18811 Brassica carinata HOM05D007510 ORTHO05D009587 2.7e-13 79.3 53 67.9
Thhalv10014934m.g Eutrema salsugineum HOM05D007510 ORTHO05D009587 2.7e-13 79.3 106 39.6
Prupe.7G163800 Prunus persica HOM05D007510 ORTHO05D000703 3.6e-13 79.0 102 41.2
Lj4g0024164 Lotus japonicus HOM05D007510 ORTHO05D009587 4.7e-13 78.6 71 50.7
CANSAT78G1864 Cannabis sativa HOM05D007510 ORTHO05D009587 6.1e-13 78.2 40 77.5
TAR625G1319 Trochodendron aralioides HOM05D007510 ORTHO05D009587 6.1e-13 78.2 148 40.5
arahy.Tifrunner.gnm1.ann1.X6BQPF Arachis hypogaea HOM05D007510 ORTHO05D009587 1.0e-12 77.4 42 69.0
Glyma.02G052200 Glycine max HOM05D007510 ORTHO05D009587 1.0e-12 77.4 57 56.1
Cpa.g.sc6.200 Carica papaya HOM05D007510 ORTHO05D009587 1.8e-12 76.6 42 78.6
Psat4g096640 Pisum sativum HOM05D007510 ORTHO05D009587 2.3e-12 76.3 47 61.7
PGR102G2493 Punica granatum HOM05D007510 ORTHO05D009587 3.0e-12 75.9 43 69.8
SGA_v2.0_scaffold280G46849 Striga asiatica HOM05D007510 ORTHO05D009587 3.0e-12 75.9 31 96.8
Duzib264G0517 Durio zibethinus HOM05D007510 ORTHO05D009587 4.0e-12 75.5 46 73.9
Atru.chr3.749 Acer truncatum HOM05D007510 ORTHO05D009587 5.2e-12 75.1 43 72.1
Ah.02g124790 Amaranthus hybridus HOM05D007510 ORTHO05D009587 5.2e-12 75.1 78 52.6
Potri.007G017200 Populus trichocarpa HOM05D007510 ORTHO05D009587 5.2e-12 75.1 39 79.5
AUR62007639 Chenopodium quinoa HOM05D007510 ORTHO05D009587 6.7e-12 74.7 136 33.8
Ca_22347_v3 Cicer arietinum L. HOM05D007510 ORTHO05D009587 6.7e-12 74.7 41 73.2
Os09g0530900 Oryza sativa ssp. japonica HOM05D007510 ORTHO05D009587 6.7e-12 74.7 49 63.3
SHI08591 Sapria himalayana HOM05D007510 ORTHO05D009587 6.7e-12 74.7 50 60.0
Thecc.01G024800 Theobroma cacao HOM05D007510 ORTHO05D009587 1.2e-11 73.9 39 84.6
CANSAT01G2887 Cannabis sativa HOM05D007510 ORTHO05D009587 1.5e-11 73.6 80 51.2
TWI09G1276 Tripterygium wilfordii HOM05D007510 ORTHO05D009587 1.5e-11 73.6 144 35.4
Aqoxy1G00866 Aquilegia oxysepala HOM05D007510 ORTHO05D009587 2.6e-11 72.8 29 96.6
Gohir.A02G168700 Gossypium hirsutum HOM05D007510 ORTHO05D009587 3.3e-11 72.4 62 58.1
Phvul.003G257700 Phaseolus vulgaris HOM05D007510 ORTHO05D009587 4.4e-11 72.0 48 58.3
BcaC03g18546 Brassica carinata HOM05D007510 ORTHO05D009587 5.7e-11 71.6 66 48.5
CDE04G3692 Ceratophyllum demersum HOM05D001179 ORTHO05D002194 5.7e-11 71.6 41 75.6
FAN28G2971 Fragaria x ananassa HOM05D007510 ORTHO05D009587 7.5e-11 71.2 99 44.4
C02p08940 Brassica napus HOM05D007510 ORTHO05D009587 9.7e-11 70.9 41 70.7
BolC2t06803H Brassica oleracea HOM05D007510 ORTHO05D009587 9.7e-11 70.9 41 70.7
Gohir.D03G011300 Gossypium hirsutum HOM05D007510 ORTHO05D009587 9.7e-11 70.9 159 35.2
Gorai.003G011700 Gossypium raimondii HOM05D007510 ORTHO05D009587 9.7e-11 70.9 159 35.2
MD02G1136700 Malus domestica HOM05D007510 ORTHO05D000703 9.7e-11 70.9 31 87.1
CARHR195940 Cardamine hirsuta HOM05D007510 ORTHO05D009587 1.3e-10 70.5 38 78.9
HPP92_022284 Vanilla planifolia HOM05D007510 ORTHO05D009587 1.7e-10 70.1 65 52.3
HPP92_022401 Vanilla planifolia HOM05D007510 ORTHO05D009587 1.7e-10 70.1 65 52.3
CDE12G0095 Ceratophyllum demersum HOM05D007510 ORTHO05D009587 2.2e-10 69.7 41 73.2
Manes.02G175500 Manihot esculenta HOM05D007510 ORTHO05D009587 2.2e-10 69.7 127 38.6
HPP92_028382 Vanilla planifolia HOM05D007510 ORTHO05D009587 2.2e-10 69.7 65 52.3
FAN26G1275 Fragaria x ananassa HOM05D007510 ORTHO05D009587 3.7e-10 68.9 65 49.2
SEGI_27269 Sequoiadendron giganteum HOM05D007510 ORTHO05D009587 4.8e-10 68.6 31 80.6
Sc03g0003350 Simmondsia chinensis HOM05D007510 ORTHO05D009587 6.3e-10 68.2 58 58.6
FvH4_1g12420 Fragaria vesca HOM05D000116 ORTHO05D000703 8.2e-10 67.8 125 36.0
Sed0019199 Sechium edule HOM05D007510 ORTHO05D009587 8.2e-10 67.8 100 41.0
ATR0661G079 Amborella trichopoda HOM05D007510 ORTHO05D009587 1.4e-09 67.0 30 80.0
AagrBONN_evm.TU.Sc2ySwM_228.2268 Anthoceros agrestis HOM05D007510 ORTHO05D009587 1.4e-09 67.0 72 47.2
AagrBONN_evm.TU.Sc2ySwM_368.2258 Anthoceros agrestis HOM05D007510 ORTHO05D009587 1.4e-09 67.0 47 61.7
Mapoly0025s0056 Marchantia polymorpha HOM05D007510 ORTHO05D009587 2.4e-09 66.2 128 32.0
Zm00001eb319510 Zea mays HOM05D007510 ORTHO05D009587 3.1e-09 65.9 40 62.5
EL10As8g23866 Beta vulgaris HOM05D007510 ORTHO05D009587 2.0e-08 63.2 155 31.6
Pp3c10_3490 Physcomitrium patens HOM05D007510 ORTHO05D009587 7.7e-08 61.2 35 68.6
AL6G28340 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 9.4e-06 54.3 34 61.8


User provided reference genes

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