Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 5.2e-86 321.2 191 100.0
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 2.4e-62 242.7 194 68.6
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 3.4e-61 238.8 189 69.3
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.9e-60 235.0 188 67.6
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 7.1e-59 231.1 193 71.0
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 2.1e-58 229.6 188 66.0
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 7.9e-58 227.6 149 81.9
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.3e-57 226.9 183 68.9
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.3e-57 226.1 188 70.7
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 5.1e-57 224.9 189 66.7
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 1.5e-56 223.4 189 66.1
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 3.3e-56 222.2 189 65.6
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.3e-55 220.3 195 65.1
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.6e-55 219.9 188 65.4
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.1e-55 219.5 188 65.4
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.1e-55 219.5 189 64.6
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 4.8e-55 218.4 187 65.2
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.1e-54 217.2 187 64.2
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.4e-54 216.9 189 64.0
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.4e-54 216.9 189 64.0
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 2.4e-54 216.1 137 81.8
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 6.9e-54 214.5 192 63.0
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 9.0e-54 214.2 189 63.0
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.2e-53 213.8 190 63.7
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.2e-53 213.8 190 63.7
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 2.6e-53 212.6 186 61.8
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 3.4e-53 212.2 194 62.4
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 4.5e-53 211.8 193 68.4
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 4.5e-53 211.8 204 67.6
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 7.6e-53 211.1 187 69.5
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.0e-52 210.7 190 62.1
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 1.3e-52 210.3 196 66.8
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.7e-52 209.9 186 60.8
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 2.2e-52 209.5 188 61.7
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.2e-52 209.5 187 63.1
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.2e-52 209.5 187 63.1
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 2.2e-52 209.5 194 61.9
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 2.9e-52 209.1 189 60.8
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 3.8e-52 208.8 188 62.8
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 4.9e-52 208.4 188 60.6
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 6.5e-52 208.0 189 60.8
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 6.5e-52 208.0 189 62.4
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 8.4e-52 207.6 192 60.4
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 8.4e-52 207.6 192 60.9
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 8.4e-52 207.6 139 76.3
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.4e-51 206.8 195 60.5
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.4e-51 206.8 193 60.1
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.9e-51 206.5 189 59.8
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.9e-51 206.5 190 61.6
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 2.5e-51 206.1 139 76.3
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 2.5e-51 206.1 195 59.5
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.5e-51 206.1 189 60.3
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 2.5e-51 206.1 207 58.9
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.5e-51 206.1 189 63.0
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.2e-51 205.7 189 60.3
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 4.2e-51 205.3 187 63.6
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 4.2e-51 205.3 190 57.9
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 5.5e-51 204.9 186 60.2
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 5.5e-51 204.9 194 62.4
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 7.1e-51 204.5 191 59.7
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 9.3e-51 204.1 189 60.3
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 2.1e-50 203.0 189 60.3
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 4.6e-50 201.8 145 72.4
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.6e-50 201.8 190 60.5
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 6.0e-50 201.4 186 60.2
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.0e-50 201.4 143 72.7
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 7.9e-50 201.1 186 60.2
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 7.9e-50 201.1 186 59.1
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 7.9e-50 201.1 143 72.7
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 7.9e-50 201.1 186 58.6
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 7.9e-50 201.1 198 57.6
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.3e-49 200.3 191 58.1
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 1.3e-49 200.3 191 58.6
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.8e-49 199.9 186 59.7
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.8e-49 199.9 187 61.0
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 2.3e-49 199.5 139 75.5
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 3.0e-49 199.1 191 58.1
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 3.0e-49 199.1 186 58.6
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 3.9e-49 198.7 190 58.9
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 3.9e-49 198.7 191 58.1
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 5.1e-49 198.4 191 58.6
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 5.1e-49 198.4 191 58.6
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 5.1e-49 198.4 191 57.6
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.1e-49 198.4 189 59.3
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.1e-49 198.4 189 59.3
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.1e-49 198.4 189 59.3
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 6.7e-49 198.0 189 66.1
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 1.1e-48 197.2 190 57.9
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 1.1e-48 197.2 191 58.6
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 1.9e-48 196.4 138 73.2
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 4.3e-48 195.3 191 57.6
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 7.4e-48 194.5 143 70.6
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 7.4e-48 194.5 185 58.4
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.3e-47 193.7 189 59.3
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 3.7e-47 192.2 187 54.5
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 3.7e-47 192.2 186 58.6
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 6.3e-47 191.4 186 56.5
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 6.3e-47 191.4 191 66.0
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.4e-46 190.3 187 55.1
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 3.1e-46 189.1 195 57.9
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 6.9e-46 188.0 185 55.7
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 9.0e-46 187.6 191 62.3
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.0e-45 186.4 187 58.8
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 4.5e-45 185.3 188 58.5
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 4.5e-45 185.3 188 58.5
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 5.9e-45 184.9 168 61.9
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.0e-44 181.8 114 78.1
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 2.5e-43 179.5 187 61.5
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 2.5e-43 179.5 102 87.3
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 9.3e-43 177.6 140 65.7
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.8e-41 173.3 143 64.3
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 1.1e-40 170.6 137 64.2
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.5e-40 170.2 186 54.3
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 5.3e-38 161.8 169 58.6
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.7e-36 156.8 137 58.4
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.4e-35 153.7 109 77.1
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 3.2e-35 152.5 91 81.3
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 5.5e-35 151.8 121 64.5
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 9.4e-35 151.0 190 45.3
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.1e-34 149.8 188 50.0
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 2.1e-34 149.8 140 53.6
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.5e-32 143.7 147 56.5
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.8e-30 136.7 119 59.7
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 2.4e-30 136.3 151 58.9
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 4.5e-29 132.1 102 63.7
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.9e-28 129.4 110 59.1
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 3.8e-28 129.0 108 60.2
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 3.8e-28 129.0 101 63.4
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 8.5e-28 127.9 101 62.4
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 1.9e-27 126.7 102 64.7
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 5.5e-27 125.2 103 63.1
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 5.5e-27 125.2 107 57.0
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 5.5e-27 125.2 98 70.4
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 6.7e-25 118.2 94 59.6
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.2e-23 113.2 111 55.9
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.8e-22 110.2 103 54.4
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 5.3e-22 108.6 109 55.0
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 9.1e-22 107.8 93 60.2
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 1.6e-21 107.1 141 48.9
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 2.0e-21 106.7 89 61.8
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 1.3e-20 104.0 80 62.5
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.7e-20 103.6 96 65.6
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.2e-20 103.2 108 52.8
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.1e-19 100.9 71 66.2
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 6.1e-18 95.1 64 76.6
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.0e-17 94.4 96 50.0
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.0e-17 92.8 67 71.6
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 1.5e-16 90.5 98 44.9
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 3.3e-16 89.4 81 58.0
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.3e-15 87.4 94 51.1
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 2.8e-15 86.3 129 45.0
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.0e-12 77.8 87 41.4


User provided reference genes

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