Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038408 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 3.4e-55 218.0 105 100.0
Haze_03845 Corylus avellana HOM05D001765 ORTHO05D003527 8.2e-25 117.1 105 61.0
Nitab4.5_0000136g0160 Nicotiana tabacum HOM05D001765 ORTHO05D003527 4.5e-23 111.3 56 91.1
Nitab4.5_0009648g0050 Nicotiana tabacum HOM05D001765 ORTHO05D003527 4.5e-23 111.3 56 91.1
Dinv05607 Davidia involucrata HOM05D001765 ORTHO05D003527 1.3e-22 109.8 57 86.0
Dinv10225 Davidia involucrata HOM05D001765 ORTHO05D003527 1.3e-22 109.8 57 86.0
vmacro17720 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 2.2e-22 109.0 59 81.4
vmacro22958 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 2.2e-22 109.0 59 81.4
DCAR_025478 Daucus carota HOM05D001765 ORTHO05D003527 2.9e-22 108.6 56 85.7
Peaxi162Scf00207g01134 Petunia axillaris HOM05D001765 ORTHO05D003527 2.9e-22 108.6 56 87.5
Peaxi162Scf01385g00023 Petunia axillaris HOM05D001765 ORTHO05D003527 2.9e-22 108.6 56 87.5
Migut.H02511 Erythranthe guttata HOM05D001765 ORTHO05D003527 5.0e-22 107.8 57 84.2
Actinidia19217 Actinidia chinensis HOM05D001765 ORTHO05D003527 6.5e-22 107.5 56 85.7
Cc07_g11660 Coffea canephora HOM05D001765 ORTHO05D003527 1.1e-21 106.7 57 80.7
FvH4_1g12530 Fragaria vesca HOM05D001765 ORTHO05D003527 1.9e-21 105.9 57 84.2
FAN19G2967 Fragaria x ananassa HOM05D001765 ORTHO05D003527 1.9e-21 105.9 57 84.2
FAN28G1354 Fragaria x ananassa HOM05D001765 ORTHO05D003527 1.9e-21 105.9 57 84.2
Peaxi162Scf00207g01135 Petunia axillaris HOM05D001765 ORTHO05D003527 1.9e-21 105.9 53 90.6
vmacro22966 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 1.9e-21 105.9 57 82.5
Rhsim08G0122600 Rhododendron simsii HOM05D001765 ORTHO05D003527 2.5e-21 105.5 57 82.5
SalBow8G1820 Salvia bowleyana HOM05D001765 ORTHO05D003527 2.5e-21 105.5 57 82.5
GSVIVG01018876001 Vitis vinifera HOM05D001765 ORTHO05D003527 2.5e-21 105.5 57 82.5
Cc08_g04490 Coffea canephora HOM05D001765 ORTHO05D003527 4.2e-21 104.8 57 78.9
SGA_v2.0_scaffold7G03543 Striga asiatica HOM05D006805 ORTHO05D003527 4.2e-21 104.8 56 83.9
CiPaw.08G138100 Carya illinoinensis HOM05D001765 ORTHO05D003527 7.2e-21 104.0 57 80.7
Oeu002033.1 Olea europaea HOM05D001765 ORTHO05D003527 7.2e-21 104.0 57 80.7
Potri.005G118900 Populus trichocarpa HOM05D001765 ORTHO05D003527 9.4e-21 103.6 57 82.5
QL06p035070 Quercus lobata HOM05D001765 ORTHO05D003527 1.2e-20 103.2 57 80.7
Solyc02g062530.3 Solanum lycopersicum HOM05D001765 ORTHO05D003527 1.6e-20 102.8 56 82.1
Sopen02g013530 Solanum pennellii HOM05D001765 ORTHO05D003527 1.6e-20 102.8 56 82.1
MELO3C016404.2 Cucumis melo HOM05D001765 ORTHO05D003527 2.7e-20 102.1 57 82.5
CsaV3_4G005440 Cucumis sativus L. HOM05D001765 ORTHO05D003527 2.7e-20 102.1 57 80.7
RcHm_v2.0_Chr2g0100461 Rosa chinensis HOM05D001765 ORTHO05D003527 2.7e-20 102.1 57 78.9
Dinv40028 Davidia involucrata HOM05D001765 ORTHO05D003527 4.7e-20 101.3 56 82.1
Sabra05G0098000 Salix brachista HOM05D001765 ORTHO05D003527 4.7e-20 101.3 57 80.7
Eucgr.A00850 Eucalyptus grandis HOM05D001765 ORTHO05D003527 6.1e-20 100.9 57 80.7
Manes.02G222800 Manihot esculenta HOM05D001765 ORTHO05D003527 6.1e-20 100.9 57 78.9
Thecc.04G047100 Theobroma cacao HOM05D001765 ORTHO05D003527 6.1e-20 100.9 57 77.2
Cfa006911 Carpinus fangiana HOM05D001765 ORTHO05D003527 8.0e-20 100.5 57 77.2
Duzib147G0794 Durio zibethinus HOM05D001765 ORTHO05D003527 8.0e-20 100.5 57 78.9
CANSAT01G1346 Cannabis sativa HOM05D001765 ORTHO05D003527 1.4e-19 99.8 57 77.2
Prupe.7G161600 Prunus persica HOM05D001765 ORTHO05D003527 1.4e-19 99.8 57 78.9
Sed0024924 Sechium edule HOM05D001765 ORTHO05D003527 1.8e-19 99.4 54 83.3
PGR119G0836 Punica granatum HOM05D001765 ORTHO05D003527 2.3e-19 99.0 57 75.4
Aqoxy5G01550 Aquilegia oxysepala HOM05D001765 ORTHO05D003527 5.2e-19 97.8 56 78.6
Lalb_Chr08g0235841 Lupinus albus HOM05D001765 ORTHO05D003527 5.2e-19 97.8 57 75.4
CDE04G0335 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 6.8e-19 97.4 56 76.8
MD15G1252600 Malus domestica HOM05D001765 ORTHO05D003527 6.8e-19 97.4 57 77.2
HPP92_011573 Vanilla planifolia HOM05D001765 ORTHO05D003527 6.8e-19 97.4 56 76.8
MD02G1139500 Malus domestica HOM05D001765 ORTHO05D003527 8.8e-19 97.1 57 77.2
Cfa010227 Carpinus fangiana HOM05D001765 ORTHO05D003527 1.2e-18 96.7 56 76.8
CDE07G0806 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 1.2e-18 96.7 56 76.8
Gohir.D03G000300 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.0e-18 95.9 57 73.7
Gorai.003G000600 Gossypium raimondii HOM05D001765 ORTHO05D003527 2.0e-18 95.9 57 73.7
Gorai.004G000500 Gossypium raimondii HOM05D001765 ORTHO05D003527 2.6e-18 95.5 57 73.7
Gohir.A07G233400 Gossypium hirsutum HOM05D001765 ORTHO05D003527 3.4e-18 95.1 57 73.7
arahy.Tifrunner.gnm1.ann1.86P1YE Arachis hypogaea HOM05D001765 ORTHO05D003527 4.4e-18 94.7 108 50.9
arahy.Tifrunner.gnm1.ann1.CUK8Y6 Arachis hypogaea HOM05D001765 ORTHO05D003527 4.4e-18 94.7 108 50.9
Gohir.A05G416501 Gossypium hirsutum HOM05D001765 ORTHO05D003527 5.7e-18 94.4 57 71.9
Gohir.A05G416901 Gossypium hirsutum HOM05D001765 ORTHO05D003527 5.7e-18 94.4 57 71.9
Gorai.012G000100 Gossypium raimondii HOM05D001765 ORTHO05D003527 5.7e-18 94.4 57 71.9
unitig_899.g14639 Utricularia gibba HOM05D001765 ORTHO05D003527 5.7e-18 94.4 56 75.0
Gohir.D12G000200 Gossypium hirsutum HOM05D001765 ORTHO05D003527 7.5e-18 94.0 57 71.9
Gorai.009G456300 Gossypium raimondii HOM05D001765 ORTHO05D003527 9.8e-18 93.6 56 73.2
Glyma.14G008500 Glycine max HOM05D001765 ORTHO05D003527 1.7e-17 92.8 57 68.4
Gorai.010G246100 Gossypium raimondii HOM05D001765 ORTHO05D003527 1.7e-17 92.8 57 71.9
Gohir.A10G243200 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.8e-17 92.0 57 71.9
Carub.0008s0929 Capsella rubella HOM05D001765 ORTHO05D003527 3.7e-17 91.7 52 76.9
ClCG07G008720 Citrullus lanatus HOM05D001765 ORTHO05D003527 3.7e-17 91.7 61 72.1
THA.LOC104826037 Tarenaya hassleriana HOM05D001765 ORTHO05D003527 4.8e-17 91.3 57 68.4
ATR1125G025 Amborella trichopoda HOM05D001765 ORTHO05D003527 6.3e-17 90.9 49 81.6
VMungo0647G1062 Vigna mungo HOM05D001765 ORTHO05D003527 6.3e-17 90.9 57 64.9
Aa31LG11G8000 Aethionema arabicum HOM05D001765 ORTHO05D003527 1.1e-16 90.1 52 75.0
Thhalv10005097m.g Eutrema salsugineum HOM05D001765 ORTHO05D003527 1.1e-16 90.1 52 75.0
Sp2g19750 Schrenkiella parvula HOM05D001765 ORTHO05D003527 1.1e-16 90.1 52 75.0
SpUn0021_0100 Schrenkiella parvula HOM05D001765 ORTHO05D003527 1.1e-16 90.1 52 75.0
AL8G23120 Arabidopsis lyrata HOM05D001765 ORTHO05D003527 1.4e-16 89.7 51 76.5
AT5G49410 Arabidopsis thaliana HOM05D001765 ORTHO05D003527 1.4e-16 89.7 51 76.5
MBI10_g00746_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D003527 1.4e-16 89.7 56 71.4
arahy.Tifrunner.gnm1.ann1.IX6XHP Arachis hypogaea HOM05D001765 ORTHO05D003527 3.1e-16 88.6 57 68.4
BcaB07g34155 Brassica carinata HOM05D001765 ORTHO05D003527 3.1e-16 88.6 52 71.2
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 3.1e-16 88.6 52 73.1
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 3.1e-16 88.6 52 73.1
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 3.1e-16 88.6 52 73.1
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 3.1e-16 88.6 52 73.1
Gohir.A01G232040 Gossypium hirsutum HOM05D001765 ORTHO05D003527 3.1e-16 88.6 57 68.4
Gohir.A08G000008 Gossypium hirsutum HOM05D001765 ORTHO05D003527 3.1e-16 88.6 57 68.4
Gorai.007G380100 Gossypium raimondii HOM05D001765 ORTHO05D003527 3.1e-16 88.6 57 68.4
Hund05221 Selenicereus undatus HOM05D001765 ORTHO05D003527 3.1e-16 88.6 47 85.1
MBI18_g05082_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D003527 5.4e-16 87.8 50 76.0
Atru.chr3.680 Acer truncatum HOM05D001765 ORTHO05D003527 7.0e-16 87.4 52 71.2
Atru.chr3.726 Acer truncatum HOM05D001765 ORTHO05D003527 7.0e-16 87.4 52 71.2
EL10Ac1g02248 Beta vulgaris HOM05D001765 ORTHO05D003527 7.0e-16 87.4 59 74.6
Gohir.D10G000101 Gossypium hirsutum HOM05D001765 ORTHO05D003527 7.0e-16 87.4 57 66.7
Phvul.008G284700 Phaseolus vulgaris HOM05D001765 ORTHO05D003527 7.0e-16 87.4 57 63.2
TWI09G0332 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 1.2e-15 86.7 57 70.2
CARHR182120 Cardamine hirsuta HOM05D001765 ORTHO05D003527 1.6e-15 86.3 51 72.5
ECA232G4044 Erigeron canadensis HOM05D001765 ORTHO05D003527 1.6e-15 86.3 57 64.9
Gorai.006G275100 Gossypium raimondii HOM05D001765 ORTHO05D003527 1.6e-15 86.3 57 64.9
Ah.00g000090 Amaranthus hybridus HOM05D001765 ORTHO05D003527 2.0e-15 85.9 58 75.9
Cfa010228 Carpinus fangiana HOM05D001765 ORTHO05D003527 2.0e-15 85.9 48 77.1
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.7e-15 85.5 56 67.9
HanXRQChr09g0261241 Helianthus annuus HOM05D001765 ORTHO05D003527 3.5e-15 85.1 57 63.2
Lsat_1_v5_gn_4_151821 Lactuca sativa HOM05D001765 ORTHO05D003527 3.5e-15 85.1 57 63.2
TPR.G1302 Trifolium pratense HOM05D001765 ORTHO05D003527 4.5e-15 84.7 57 63.2
TWI73G1042 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 5.9e-15 84.3 57 68.4
Gohir.D04G192700 Gossypium hirsutum HOM05D001765 ORTHO05D003527 7.7e-15 84.0 57 64.9
arahy.Tifrunner.gnm1.ann1.WC8DZD Arachis hypogaea HOM05D001765 ORTHO05D003527 1.0e-14 83.6 57 57.9
Ca_06451_v3 Cicer arietinum L. HOM05D001765 ORTHO05D003527 1.0e-14 83.6 57 63.2
Zm00001eb314680 Zea mays HOM05D001765 ORTHO05D003527 1.3e-14 83.2 56 62.5
Lj1g0003490 Lotus japonicus HOM05D001765 ORTHO05D003527 1.7e-14 82.8 57 61.4
Psat2g004640 Pisum sativum HOM05D001765 ORTHO05D003527 2.2e-14 82.4 57 63.2
SEGI_06712 Sequoiadendron giganteum HOM05D001765 ORTHO05D003527 2.2e-14 82.4 57 57.9
arahy.Tifrunner.gnm1.ann1.EZ0MZE Arachis hypogaea HOM05D001765 ORTHO05D003527 5.0e-14 81.3 57 56.1
arahy.Tifrunner.gnm1.ann1.M20B87 Arachis hypogaea HOM05D001765 ORTHO05D003527 5.0e-14 81.3 57 56.1
Medtr5g097230 Medicago truncatula HOM05D001765 ORTHO05D003527 5.0e-14 81.3 57 61.4
Os08g0360000 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D003527 1.5e-13 79.7 56 60.7
Cpa.g.sc6.177 Carica papaya HOM05D001765 ORTHO05D003527 2.1e-12 75.9 41 78.0
Actinidia26093 Actinidia chinensis HOM05D001765 ORTHO05D003527 2.7e-12 75.5 40 82.5
PGSC0003DMG400015496 Solanum tuberosum HOM05D001765 ORTHO05D003527 8.0e-12 73.9 40 80.0
SEGI_00799 Sequoiadendron giganteum HOM05D001765 ORTHO05D003527 5.9e-07 57.8 72 36.1
HanXRQChr11g0325551 Helianthus annuus HOM05D001765 ORTHO05D003527 1.0e-06 57.0 41 56.1
Lalb_Chr10g0093061 Lupinus albus HOM05D001765 ORTHO05D003527 8.6e-06 53.9 68 36.8
TAR375G0793 Trochodendron aralioides HOM05D001765 ORTHO05D003527 8.6e-06 53.9 54 38.9


User provided reference genes

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