Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038404 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 9.0e-59 229.9 108 100.0
CSS0019423 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 3.0e-38 161.8 107 71.0
CSS0026162 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 2.9e-33 145.2 94 75.5
Actinidia11177 Actinidia chinensis HOM05D004117 ORTHO05D004520 7.2e-24 114.0 94 58.5
Dinv11422 Davidia involucrata HOM05D004117 ORTHO05D004520 2.1e-23 112.5 88 62.5
vmacro12419 Vaccinium macrocarpon HOM05D004117 ORTHO05D004520 2.1e-23 112.5 92 58.7
Dinv03089 Davidia involucrata HOM05D004117 ORTHO05D004520 2.7e-23 112.1 90 63.3
Peaxi162Scf00154g01022 Petunia axillaris HOM05D004117 ORTHO05D004520 6.1e-23 110.9 94 56.4
Rhsim06G0124300 Rhododendron simsii HOM05D004117 ORTHO05D004520 6.1e-23 110.9 92 57.6
COL.COLO4_33652 Corchorus olitorius HOM05D004117 ORTHO05D004520 7.9e-23 110.5 93 58.1
Hma1.2p1_0178F.1_g078380 Hydrangea macrophylla HOM05D004117 ORTHO05D004520 2.3e-22 109.0 91 60.4
Sopen07g029060 Solanum pennellii HOM05D004117 ORTHO05D004520 3.9e-22 108.2 94 55.3
Duzib264G0691 Durio zibethinus HOM05D004117 ORTHO05D004520 6.7e-22 107.5 93 57.0
Sabra06G0216200 Salix brachista HOM05D004117 ORTHO05D004520 6.7e-22 107.5 87 57.5
Solyc07g055700.2 Solanum lycopersicum HOM05D004117 ORTHO05D004520 6.7e-22 107.5 101 51.5
TAR030G0002 Trochodendron aralioides HOM05D004117 ORTHO05D004520 6.7e-22 107.5 89 59.6
Potri.006G278700 Populus trichocarpa HOM05D004117 ORTHO05D004520 8.8e-22 107.1 84 58.3
THA.LOC104800830 Tarenaya hassleriana HOM05D004117 ORTHO05D004520 8.8e-22 107.1 87 59.8
Haze_13437 Corylus avellana HOM05D013182 ORTHO05D004520 1.1e-21 106.7 95 54.7
Lj1C629G7 Lonicera japonica HOM05D004117 ORTHO05D004520 1.1e-21 106.7 93 58.1
Atru.chr6.3571 Acer truncatum HOM05D004117 ORTHO05D004520 2.0e-21 105.9 94 55.3
A10p05130 Brassica napus HOM05D004117 ORTHO05D004520 2.0e-21 105.9 87 59.8
C05p04720 Brassica napus HOM05D004117 ORTHO05D004520 2.0e-21 105.9 87 59.8
BolC5t29244H Brassica oleracea HOM05D004117 ORTHO05D004520 2.0e-21 105.9 87 59.8
BraA10t42778Z Brassica rapa HOM05D004117 ORTHO05D004520 2.0e-21 105.9 87 59.8
Manes.01G129950 Manihot esculenta HOM05D004117 ORTHO05D004520 3.3e-21 105.1 87 58.6
CAN.G803.15 Capsicum annuum HOM05D004117 ORTHO05D004520 5.7e-21 104.4 91 56.0
Thhalv10007752m.g Eutrema salsugineum HOM05D004117 ORTHO05D004520 5.7e-21 104.4 87 58.6
Lsat_1_v5_gn_4_26681 Lactuca sativa HOM05D004117 ORTHO05D004520 5.7e-21 104.4 96 55.2
BcaB03g13416 Brassica carinata HOM05D004117 ORTHO05D004520 9.7e-21 103.6 87 57.5
CiPaw.04G134900 Carya illinoinensis HOM05D004117 ORTHO05D004520 1.3e-20 103.2 93 53.8
Thecc.01G156100 Theobroma cacao HOM05D004117 ORTHO05D004520 1.3e-20 103.2 87 57.5
Aa31LG1G7530 Aethionema arabicum HOM05D004117 ORTHO05D004520 1.7e-20 102.8 85 58.8
AL1G16480 Arabidopsis lyrata HOM05D004117 ORTHO05D004520 1.7e-20 102.8 87 58.6
DCAR_014033 Daucus carota HOM05D004117 ORTHO05D004520 1.7e-20 102.8 91 53.8
Carub.0001s0583 Capsella rubella HOM05D004117 ORTHO05D004520 2.2e-20 102.4 87 58.6
Ciclev10017482m.g Citrus clementina HOM05D004117 ORTHO05D004520 2.2e-20 102.4 94 54.3
Nitab4.5_0005259g0030 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.2e-20 102.4 93 53.8
Oeu032129.1 Olea europaea HOM05D004117 ORTHO05D004520 2.2e-20 102.4 94 56.4
Sp1g05230 Schrenkiella parvula HOM05D004117 ORTHO05D004520 2.2e-20 102.4 87 57.5
GSVIVG01020780001 Vitis vinifera HOM05D004117 ORTHO05D004520 2.2e-20 102.4 92 54.3
Duzib147G1030 Durio zibethinus HOM05D004117 ORTHO05D004520 2.8e-20 102.1 86 58.1
Peaxi162Scf00807g00047 Petunia axillaris HOM05D004117 ORTHO05D004520 2.8e-20 102.1 88 60.2
AT1G06470 Arabidopsis thaliana HOM05D004117 ORTHO05D004520 3.7e-20 101.7 87 58.6
BcaC07g36811 Brassica carinata HOM05D004117 ORTHO05D004520 3.7e-20 101.7 85 57.6
C08p02610 Brassica napus HOM05D004117 ORTHO05D004520 3.7e-20 101.7 85 57.6
BolC8t47054H Brassica oleracea HOM05D004117 ORTHO05D004520 3.7e-20 101.7 85 57.6
CANSAT64G1854 Cannabis sativa HOM05D004117 ORTHO05D004520 3.7e-20 101.7 101 50.5
ECA234G3208 Erigeron canadensis HOM05D004117 ORTHO05D004520 4.8e-20 101.3 87 54.0
Manes.02G087500 Manihot esculenta HOM05D004117 ORTHO05D004520 4.8e-20 101.3 94 55.3
QL08p042899 Quercus lobata HOM05D004117 ORTHO05D004520 4.8e-20 101.3 89 55.1
SGA_v2.0_scaffold46G17443 Striga asiatica HOM05D004117 ORTHO05D004520 8.2e-20 100.5 96 53.1
HanXRQChr01g0028621 Helianthus annuus HOM05D004117 ORTHO05D004520 1.1e-19 100.1 91 56.0
CARHR006080 Cardamine hirsuta HOM05D004117 ORTHO05D004520 1.4e-19 99.8 87 57.5
SGA_v2.0_scaffold9G04867 Striga asiatica HOM05D004117 ORTHO05D004520 1.4e-19 99.8 88 58.0
Oeu028661.1 Olea europaea HOM05D004117 ORTHO05D004520 1.8e-19 99.4 90 56.7
Eucgr.A01947 Eucalyptus grandis HOM05D004117 ORTHO05D004520 2.4e-19 99.0 87 54.0
HanXRQChr04g0105921 Helianthus annuus HOM05D004117 ORTHO05D004520 2.4e-19 99.0 89 56.2
Gohir.A11G059900 Gossypium hirsutum HOM05D004117 ORTHO05D004520 4.1e-19 98.2 86 55.8
SalBow7G1867 Salvia bowleyana HOM05D004117 ORTHO05D004520 4.1e-19 98.2 88 56.8
Nitab4.5_0003133g0050 Nicotiana tabacum HOM05D004117 ORTHO05D004520 6.9e-19 97.4 105 49.5
Sc12g0003810 Simmondsia chinensis HOM05D004117 ORTHO05D004520 6.9e-19 97.4 87 52.9
A08p35950 Brassica napus HOM05D004117 ORTHO05D004520 9.1e-19 97.1 85 55.3
BraA08t35503Z Brassica rapa HOM05D004117 ORTHO05D004520 9.1e-19 97.1 85 55.3
DCAR_010149 Daucus carota HOM05D004117 ORTHO05D004520 9.1e-19 97.1 96 51.0
Sc21g0004310 Simmondsia chinensis HOM05D004117 ORTHO05D004520 9.1e-19 97.1 91 51.6
Sopen12g006350 Solanum pennellii HOM05D004117 ORTHO05D004520 9.1e-19 97.1 89 56.2
Nn3g21103 Nelumbo nucifera HOM05D004117 ORTHO05D004520 1.2e-18 96.7 101 53.5
SalBow7G2879 Salvia bowleyana HOM05D004117 ORTHO05D004520 1.2e-18 96.7 87 58.6
Solyc12g010990.3 Solanum lycopersicum HOM05D004117 ORTHO05D004520 1.2e-18 96.7 89 56.2
Medtr8g016090 Medicago truncatula HOM05D004117 ORTHO05D004520 1.5e-18 96.3 99 47.5
PSO541G2160 Papaver somniferum HOM05D004117 ORTHO05D004520 2.0e-18 95.9 79 58.2
PSO675G6070 Papaver somniferum HOM05D004117 ORTHO05D004520 2.0e-18 95.9 79 58.2
Aqoxy1G01993 Aquilegia oxysepala HOM05D004117 ORTHO05D004520 2.6e-18 95.5 87 55.2
Gohir.D11G064000 Gossypium hirsutum HOM05D004117 ORTHO05D004520 2.6e-18 95.5 86 54.7
Gorai.007G069200 Gossypium raimondii HOM05D004117 ORTHO05D004520 2.6e-18 95.5 86 54.7
Nitab4.5_0003479g0010 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.6e-18 95.5 86 57.0
RcHm_v2.0_Chr2g0131361 Rosa chinensis HOM05D004117 ORTHO05D004520 2.6e-18 95.5 93 52.7
CAN.G486.15 Capsicum annuum HOM05D004117 ORTHO05D004520 3.4e-18 95.1 88 55.7
FvH4_6g27890 Fragaria vesca HOM05D004117 ORTHO05D004520 4.5e-18 94.7 93 50.5
FAN02G0254 Fragaria x ananassa HOM05D004117 ORTHO05D004520 4.5e-18 94.7 93 50.5
FAN05G5128 Fragaria x ananassa HOM05D004117 ORTHO05D004520 4.5e-18 94.7 93 50.5
FAN09G0194 Fragaria x ananassa HOM05D004117 ORTHO05D004520 4.5e-18 94.7 93 50.5
FAN14G3113 Fragaria x ananassa HOM05D004117 ORTHO05D004520 4.5e-18 94.7 93 50.5
Sed0017214 Sechium edule HOM05D004117 ORTHO05D004520 4.5e-18 94.7 91 51.6
MD09G1233800 Malus domestica HOM05D004117 ORTHO05D004520 5.9e-18 94.4 97 49.5
arahy.Tifrunner.gnm1.ann1.A5IPPM Arachis hypogaea HOM05D004117 ORTHO05D004520 7.7e-18 94.0 91 49.5
Lj6g0002139 Lotus japonicus HOM05D004117 ORTHO05D004520 7.7e-18 94.0 91 50.5
arahy.Tifrunner.gnm1.ann1.X0GQC6 Arachis hypogaea HOM05D004117 ORTHO05D004520 1.0e-17 93.6 91 49.5
ClCG09G020800 Citrullus lanatus HOM05D004117 ORTHO05D004520 1.3e-17 93.2 87 51.7
Migut.M00208 Erythranthe guttata HOM05D004117 ORTHO05D004520 1.7e-17 92.8 91 51.6
Lalb_Chr15g0080421 Lupinus albus HOM05D004117 ORTHO05D004520 1.7e-17 92.8 98 46.9
Prupe.3G108900 Prunus persica HOM05D004117 ORTHO05D004520 1.7e-17 92.8 113 46.0
Migut.H02117 Erythranthe guttata HOM05D004117 ORTHO05D004520 2.2e-17 92.4 96 54.2
Ah.01g016090 Amaranthus hybridus HOM05D004117 ORTHO05D004520 2.9e-17 92.0 92 48.9
Lsat_1_v5_gn_8_31821 Lactuca sativa HOM05D004117 ORTHO05D004520 2.9e-17 92.0 93 49.5
Psat4g191560 Pisum sativum HOM05D004117 ORTHO05D004520 2.9e-17 92.0 99 45.5
TPR.G22233 Trifolium pratense HOM05D004117 ORTHO05D004520 2.9e-17 92.0 98 45.9
CsaV3_6G037880 Cucumis sativus L. HOM05D004117 ORTHO05D004520 3.8e-17 91.7 87 51.7
arahy.Tifrunner.gnm1.ann1.S8R0TP Arachis hypogaea HOM05D004117 ORTHO05D004520 5.0e-17 91.3 94 48.9
Gorai.012G044300 Gossypium raimondii HOM05D004117 ORTHO05D004520 5.0e-17 91.3 86 53.5
ECA233G4030 Erigeron canadensis HOM05D004117 ORTHO05D004520 6.5e-17 90.9 91 51.6
Gohir.A05G376700 Gossypium hirsutum HOM05D004117 ORTHO05D004520 6.5e-17 90.9 86 53.5
Gohir.D04G039266 Gossypium hirsutum HOM05D004117 ORTHO05D004520 6.5e-17 90.9 86 53.5
Lalb_Chr10g0106881 Lupinus albus HOM05D004117 ORTHO05D004520 6.5e-17 90.9 95 45.3
Thecc.07G168800 Theobroma cacao HOM05D004117 ORTHO05D004520 6.5e-17 90.9 86 53.5
Hund07729 Selenicereus undatus HOM05D004117 ORTHO05D004520 8.5e-17 90.5 96 49.0
EL10Ac9g21032 Beta vulgaris HOM05D004117 ORTHO05D004520 1.1e-16 90.1 91 50.5
HanXRQChr12g0367511 Helianthus annuus HOM05D004117 ORTHO05D004520 1.1e-16 90.1 90 50.0
Phvul.006G038200 Phaseolus vulgaris HOM05D004117 ORTHO05D004520 1.1e-16 90.1 102 47.1
MD17G1230200 Malus domestica HOM05D004117 ORTHO05D004520 1.4e-16 89.7 90 48.9
arahy.Tifrunner.gnm1.ann1.EL27YX Arachis hypogaea HOM05D004117 ORTHO05D004520 2.5e-16 89.0 59 64.4
Glyma.09G101300 Glycine max HOM05D004117 ORTHO05D004520 3.2e-16 88.6 59 62.7
PGR042G1715 Punica granatum HOM05D004117 ORTHO05D004520 4.2e-16 88.2 90 51.1
VMungo0540G1454 Vigna mungo HOM05D004117 ORTHO05D004520 1.6e-15 86.3 59 59.3
Glyma.18G102500 Glycine max HOM05D004117 ORTHO05D004520 3.6e-15 85.1 59 61.0
BcaB02g06797 Brassica carinata HOM05D004117 ORTHO05D004520 8.0e-15 84.0 62 62.9
CDE09G0584 Ceratophyllum demersum HOM05D004117 ORTHO05D004520 2.0e-13 79.3 84 45.2
Nn6g34497 Nelumbo nucifera HOM05D004117 ORTHO05D004520 2.0e-13 79.3 90 45.6
Pp3c3_5740 Physcomitrium patens HOM05D004117 ORTHO05D004520 3.3e-13 78.6 92 45.7
HPP92_000571 Vanilla planifolia HOM05D004117 ORTHO05D004520 1.7e-12 76.3 101 41.6
Os06g0153200 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 1.8e-11 72.8 60 56.7
Pp3c2_29630 Physcomitrium patens HOM05D004117 ORTHO05D004520 1.8e-11 72.8 56 53.6
Nitab4.5_0000990g0060 Nicotiana tabacum HOM05D004117 ORTHO05D004520 5.3e-11 71.2 88 45.5
Mapoly0038s0060 Marchantia polymorpha HOM05D004117 ORTHO05D004520 1.2e-10 70.1 79 45.6
HPP92_009031 Vanilla planifolia HOM05D004117 ORTHO05D004520 4.5e-10 68.2 87 40.2
Zm00001eb358520 Zea mays HOM05D004117 ORTHO05D004520 1.0e-09 67.0 59 54.2
Zm00001eb376680 Zea mays HOM05D004117 ORTHO05D004520 1.0e-09 67.0 59 52.5
SMO358G0570 Selaginella moellendorffii HOM05D004117 ORTHO05D004520 1.5e-08 63.2 59 49.2
Zm00001eb370980 Zea mays HOM05D004117 ORTHO05D004520 9.4e-08 60.5 60 48.3
Zm00001eb153320 Zea mays HOM05D004117 ORTHO05D004520 1.2e-07 60.1 60 48.3
MBI06_g18691_MAGBIO Magnolia biondii HOM05D004117 ORTHO05D004520 3.0e-06 55.5 42 64.3
SEGI_15129 Sequoiadendron giganteum HOM05D004117 ORTHO05D004520 4.0e-06 55.1 82 36.6


User provided reference genes

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