Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 1.8e-274 948.7 521 100.0
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 3.1e-213 745.3 527 80.6
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 5.6e-207 724.5 496 78.6
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 6.9e-197 691.0 495 76.8
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 1.1e-194 683.7 525 75.8
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 4.8e-182 641.7 527 71.9
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 2.0e-180 636.3 528 71.8
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 4.6e-177 625.2 497 71.0
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 1.8e-176 623.2 496 69.0
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 3.9e-176 622.1 525 70.7
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 2.1e-174 616.3 527 69.3
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 1.2e-172 610.5 498 68.3
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 4.9e-171 605.1 527 68.3
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 3.2e-170 602.4 528 68.6
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 7.1e-170 601.3 498 66.9
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 6.7e-168 594.7 527 67.6
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 2.8e-166 589.3 494 66.2
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 2.8e-166 589.3 530 69.1
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 2.8e-166 589.3 494 66.4
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 6.3e-166 588.2 494 66.4
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 4.1e-165 585.5 553 66.0
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 4.1e-165 585.5 495 65.1
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 7.7e-164 581.3 490 66.9
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 1.0e-163 580.9 502 65.3
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 2.9e-163 579.3 495 65.5
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 2.1e-161 573.2 586 62.1
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 7.9e-161 571.2 528 65.9
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 5.1e-160 568.5 520 62.7
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.2e-158 563.1 555 59.1
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 6.3e-158 561.6 555 59.1
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.4e-157 559.7 556 59.0
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 9.1e-157 557.8 505 62.4
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 4.5e-156 555.4 498 64.3
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 6.5e-155 551.6 494 63.0
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 8.5e-155 551.2 500 61.8
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 1.1e-154 550.8 500 62.0
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 7.2e-154 548.1 494 64.6
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 5.1e-152 542.0 508 61.4
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 9.7e-151 537.7 455 67.3
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 3.7e-150 535.8 493 61.5
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 1.8e-149 533.5 504 60.7
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 9.1e-149 531.2 509 60.9
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 6.5e-147 525.0 496 62.5
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 4.7e-145 518.8 495 60.6
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 1.2e-140 504.2 493 59.8
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 4.5e-140 502.3 469 62.0
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 5.5e-138 495.4 495 59.6
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 2.1e-137 493.4 515 58.4
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 4.7e-137 492.3 573 53.8
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 8.0e-137 491.5 432 65.0
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 5.7e-135 485.3 496 58.9
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 4.8e-134 482.3 502 59.4
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 8.3e-134 481.5 495 57.6
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 2.0e-132 476.9 501 57.9
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 2.7e-132 476.5 501 58.5
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 5.9e-132 475.3 494 57.9
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 1.0e-131 474.6 434 62.2
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 6.5e-131 471.9 491 56.6
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 9.4e-130 468.0 498 56.0
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 6.1e-129 465.3 500 56.8
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 6.1e-129 465.3 500 56.8
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 5.2e-128 462.2 496 56.5
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 1.7e-126 457.2 439 60.4
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 1.4e-125 454.1 490 55.7
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 4.5e-124 449.1 491 54.8
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 2.9e-123 446.4 488 56.4
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 5.2e-120 435.6 510 59.0
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 2.0e-119 433.7 370 68.1
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 3.2e-117 426.4 526 54.4
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 2.0e-116 423.7 534 51.3
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.5e-111 407.5 421 57.0
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 6.4e-110 402.1 354 63.6
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 1.2e-105 387.9 501 49.9
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 4.4e-103 379.4 504 49.2
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 6.6e-99 365.5 413 57.9
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 4.7e-97 359.4 419 55.4
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 1.4e-96 357.8 505 47.5
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 6.0e-92 342.4 255 71.8
Psat2g142200 Pisum sativum HOM05D007238 ORTHO05D009206 1.1e-90 338.2 389 51.4
Cpa.g.sc90.44 Carica papaya HOM05D007238 ORTHO05D009206 3.4e-79 300.1 306 57.8
PSO782G4691 Papaver somniferum HOM05D007238 ORTHO05D009206 6.0e-60 236.1 320 49.4
HanXRQChr03g0081161 Helianthus annuus HOM05D007238 ORTHO05D009206 1.5e-50 204.9 313 47.3
HPP92_002457 Vanilla planifolia HOM05D000907 ORTHO05D000753 3.9e-43 180.3 252 45.6
SEGI_10751 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 3.8e-38 163.7 311 39.9
SEGI_26764 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 5.1e-35 153.3 166 51.8
HanXRQChr17g0554671 Helianthus annuus HOM05D007238 ORTHO05D009206 5.5e-29 133.3 158 53.8
Duzib068G0324 Durio zibethinus HOM05D007238 ORTHO05D009206 3.0e-27 127.5 109 83.5
HPP92_022728 Vanilla planifolia HOM05D007238 ORTHO05D009206 4.4e-26 123.6 236 39.8
Pp3c23_22500 Physcomitrium patens HOM05D007238 ORTHO05D009206 4.8e-25 120.2 544 28.5
SEGI_32460 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 2.0e-23 114.8 76 80.3
HPP92_025938 Vanilla planifolia HOM05D007238 ORTHO05D009206 2.7e-23 114.4 205 43.9
Hma1.2p1_0544F.1_g175540 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 1.7e-22 111.7 64 82.8
CSS0023317 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 1.8e-19 101.7 84 92.9
Cpa.g.sc90.43 Carica papaya HOM05D007238 ORTHO05D009206 1.8e-19 101.7 64 78.1
HanXRQChr03g0081141 Helianthus annuus HOM05D007238 ORTHO05D009206 3.0e-19 100.9 64 75.0
AagrBONN_evm.TU.Sc2ySwM_228.587 Anthoceros agrestis HOM05D007238 ORTHO05D009206 9.1e-16 89.4 670 26.7
arahy.Tifrunner.gnm1.ann1.DKTU9V Arachis hypogaea HOM05D007238 ORTHO05D009206 4.2e-13 80.5 283 31.4
Actinidia14160 Actinidia chinensis HOM05D007238 ORTHO05D009206 5.5e-13 80.1 44 90.9
HanXRQChr09g0247011 Helianthus annuus HOM05D007238 ORTHO05D009206 3.0e-11 74.3 39 94.9
arahy.Tifrunner.gnm1.ann1.HBQ3NA Arachis hypogaea HOM05D007238 ORTHO05D009206 4.9e-09 67.0 60 60.0
arahy.Tifrunner.gnm1.ann1.M9N5E0 Arachis hypogaea HOM05D007238 ORTHO05D009206 4.9e-09 67.0 60 60.0
HanXRQChr03g0081151 Helianthus annuus HOM05D007238 ORTHO05D009206 1.8e-08 65.1 54 63.0
FvH4_5g27460 Fragaria vesca HOM05D007238 ORTHO05D009206 9.2e-08 62.8 46 69.6
FvH4_5g27461 Fragaria vesca HOM05D007238 ORTHO05D009206 1.6e-07 62.0 63 55.6
HPP92_022727 Vanilla planifolia HOM05D007238 ORTHO05D009206 2.3e-06 58.2 120 35.0
FvH4_5g29470 Fragaria vesca HOM05D007238 ORTHO05D009206 2.9e-06 57.8 60 55.0
CSS0039429 Camellia sinensis var. sinensis HOM05D037602 ORTHO05D033921 3.8e-06 57.4 32 84.4
FAN13G3012 Fragaria x ananassa HOM05D007238 ORTHO05D009206 6.6e-06 56.6 41 68.3


User provided reference genes

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