Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.0e-77 292.4 150 100.0
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.0e-76 290.0 150 99.3
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.0e-68 263.5 150 85.3
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 3.0e-68 261.9 150 85.3
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.2e-66 256.5 150 84.0
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 4.9e-63 244.6 150 79.3
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 4.9e-63 244.6 150 80.7
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 2.4e-62 242.3 150 78.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 4.1e-62 241.5 150 79.3
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 3.5e-61 238.4 150 78.7
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 6.0e-61 237.7 150 76.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.7e-60 236.1 150 76.7
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 2.3e-60 235.7 148 78.4
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 8.6e-60 233.8 150 75.3
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.9e-59 232.6 150 76.7
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.9e-59 232.6 150 74.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.9e-59 232.6 150 74.0
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 9.5e-59 230.3 150 72.0
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.1e-58 229.2 150 72.7
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 4.7e-58 228.0 150 72.7
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 6.2e-58 227.6 150 71.3
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 6.2e-58 227.6 150 71.3
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 6.2e-58 227.6 150 71.3
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 6.2e-58 227.6 150 72.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.1e-57 226.9 147 74.1
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.1e-57 226.9 148 73.6
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.4e-57 226.5 150 75.3
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 5.2e-57 224.6 148 70.9
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 5.2e-57 224.6 147 70.7
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.2e-56 223.4 147 70.7
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.5e-56 223.0 149 73.2
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 2.6e-56 222.2 148 72.3
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.8e-56 221.1 150 70.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 70.0
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.7e-55 219.5 151 70.9
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.7e-55 219.5 150 72.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 3.8e-55 218.4 150 68.7
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 4.9e-55 218.0 150 69.3
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 6.4e-55 217.6 148 70.9
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.4e-55 217.6 147 70.1
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.4e-55 217.2 150 68.0
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 1.1e-54 216.9 150 70.0
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.1e-54 216.9 150 72.0
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.1e-54 216.9 150 68.0
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.4e-54 216.5 147 71.4
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 67.3
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 70.0
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 66.7
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 69.3
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 69.3
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 70.0
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 5.4e-54 214.5 147 69.4
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 69.3
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 66.7
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 66.7
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 70.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 66.7
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 66.7
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 9.2e-54 213.8 147 69.4
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 68.7
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.2e-53 213.4 146 69.2
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 67.3
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.6e-53 213.0 149 67.8
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 69.3
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 2.1e-53 212.6 150 67.3
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 2.7e-53 212.2 148 66.9
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.7e-53 212.2 147 68.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 66.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 68.7
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 68.0
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 67.3
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 6.0e-53 211.1 157 66.2
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 6.0e-53 211.1 148 70.9
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 70.0
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 7.8e-53 210.7 150 67.3
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.0e-52 210.3 148 66.9
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.0e-52 210.3 147 68.0
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 2.3e-52 209.1 160 65.0
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.0e-52 208.8 148 64.9
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 68.7
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 3.9e-52 208.4 222 52.7
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 5.1e-52 208.0 150 66.0
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.5e-51 205.7 148 67.6
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 3.3e-51 205.3 161 64.6
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 4.3e-51 204.9 162 61.7
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 9.6e-51 203.8 149 64.4
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.2e-50 203.4 143 65.0
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 2.1e-50 202.6 149 63.1
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 2.8e-50 202.2 148 66.2
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 4.7e-50 201.4 147 68.0
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 4.7e-50 201.4 181 56.4
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.7e-50 201.4 170 63.5
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 8.1e-50 200.7 150 66.0
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.1e-50 200.7 145 67.6
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.1e-50 200.7 145 67.6
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.4e-49 199.9 149 62.4
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.4e-49 199.9 149 66.4
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 1.8e-49 199.5 149 63.8
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.8e-49 199.5 143 67.8
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.8e-49 199.5 143 67.8
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.8e-49 199.5 143 67.8
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.8e-49 199.5 152 63.8
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 3.1e-49 198.7 193 56.5
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.0e-49 198.4 143 67.1
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 5.2e-49 198.0 147 66.0
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.2e-49 198.0 143 67.1
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 5.2e-49 198.0 149 63.8
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 6.9e-49 197.6 149 62.4
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 2.0e-48 196.1 149 62.4
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 2.0e-48 196.1 161 58.4
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 2.6e-48 195.7 148 60.8
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 2.6e-48 195.7 149 62.4
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 3.4e-48 195.3 150 63.3
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 4.4e-48 194.9 148 64.2
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 4.4e-48 194.9 140 64.3
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.8e-48 194.5 144 62.5
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 7.6e-48 194.1 135 68.1
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 9.9e-48 193.7 150 62.0
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 9.9e-48 193.7 150 62.0
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.3e-47 193.4 149 60.4
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.7e-47 193.0 140 67.1
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.8e-47 191.8 144 61.1
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 3.8e-47 191.8 148 67.6
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 3.8e-47 191.8 149 60.4
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 4.9e-47 191.4 149 59.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.4e-46 189.9 144 61.8
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.4e-46 189.1 144 60.4
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 4.2e-46 188.3 151 60.9
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 4.2e-46 188.3 140 62.1
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 5.4e-46 188.0 143 62.2
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 5.4e-46 188.0 143 62.2
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 7.8e-45 184.1 143 60.8
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.3e-44 183.3 143 62.9
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.7e-44 183.0 143 60.1
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 2.3e-44 182.6 144 58.3
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 9.0e-41 170.6 141 61.0
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.9e-38 162.9 105 70.5
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.9e-38 162.9 105 70.5
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 1.6e-37 159.8 151 58.3
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 6.0e-37 157.9 149 53.0
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.3e-34 150.2 135 56.3
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.3e-34 150.2 135 56.3
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 4.8e-34 148.3 151 52.3
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.4e-33 146.7 149 51.7
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.8e-33 146.4 105 65.7
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 6.9e-33 144.4 133 57.1
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 2.6e-32 142.5 107 59.8
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 7.6e-32 141.0 89 74.2
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.7e-31 139.8 99 66.7
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 8.4e-31 137.5 145 47.6
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.5e-30 134.8 89 73.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.6e-29 133.3 103 63.1
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 6.0e-29 131.3 89 70.8
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 2.8e-26 122.5 144 42.4
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 3.7e-26 122.1 149 47.0
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 2.2e-23 112.8 88 58.0
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.4e-22 110.2 82 57.3
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 2.5e-22 109.4 86 55.8
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 3.2e-22 109.0 140 39.3
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 9.3e-22 107.5 138 35.5
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.5e-21 105.5 103 49.5
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.0e-20 104.0 138 35.5
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.8e-18 95.9 149 33.6
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 2.4e-17 92.8 102 48.0
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 5.3e-17 91.7 144 36.8
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 2.0e-16 89.7 72 61.1
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 8.5e-15 84.3 107 32.7
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-12 76.6 87 44.8
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 1.8e-12 76.6 139 30.2
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.1e-11 73.9 81 51.9
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 3.3e-11 72.4 129 26.4
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 1.7e-10 70.1 82 48.8
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.0e-08 63.2 46 63.0
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 2.6e-08 62.8 35 71.4
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 6.5e-07 58.2 134 25.4
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.1e-06 57.4 83 41.0


User provided reference genes

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