Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038394 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 4.8e-132 474.6 247 100.0
CSS0017071 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 1.3e-124 449.9 248 96.4
CSS0036916 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 1.8e-107 392.9 224 94.6
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 3.6e-79 298.9 224 75.4
Dinv09474 Davidia involucrata HOM05D000240 ORTHO05D002608 2.7e-74 282.7 223 69.5
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 5.4e-67 258.5 224 67.4
QL07p009794 Quercus lobata HOM05D000240 ORTHO05D002608 2.8e-63 246.1 230 63.0
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 1.3e-60 237.3 229 58.5
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 1.4e-59 233.8 229 60.3
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 7.1e-59 231.5 229 57.6
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 1.5e-56 223.8 225 60.4
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 9.5e-56 221.1 226 59.7
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 9.5e-56 221.1 221 60.6
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 2.1e-55 219.9 225 60.0
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 8.1e-55 218.0 225 59.1
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 6.8e-54 214.9 227 60.8
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 6.8e-54 214.9 220 57.3
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 2.6e-53 213.0 225 57.3
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 3.4e-53 212.6 225 56.9
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 1.3e-52 210.7 225 56.4
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 4.9e-52 208.8 229 53.7
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 6.4e-52 208.4 216 58.3
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 2.4e-51 206.5 219 57.5
ClCG10G016160 Citrullus lanatus HOM05D000240 ORTHO05D002608 4.1e-51 205.7 226 55.8
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 1.6e-50 203.8 219 59.4
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.6e-50 203.8 219 59.4
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 4.6e-50 202.2 219 58.9
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 1.0e-49 201.1 231 52.8
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 1.0e-49 201.1 206 56.8
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 5.1e-49 198.7 227 54.6
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 1.9e-48 196.8 221 52.9
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 3.3e-48 196.1 216 55.1
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 7.3e-48 194.9 205 57.1
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 9.6e-48 194.5 227 53.3
Lj2A398T48 Lonicera japonica HOM05D000240 ORTHO05D002608 1.2e-47 194.1 194 60.3
Lalb_Chr21g0316681 Lupinus albus HOM05D000240 ORTHO05D002608 1.2e-47 194.1 222 54.5
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 4.7e-47 192.2 243 49.8
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.1e-46 191.0 217 56.7
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 1.8e-46 190.3 224 54.0
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 4.0e-46 189.1 219 53.0
MSTRG.6373 Avicennia marina HOM05D000240 ORTHO05D002608 6.8e-46 188.3 219 51.6
Atru.chr12.1237 Acer truncatum HOM05D000240 ORTHO05D002608 2.6e-45 186.4 216 52.8
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 3.4e-45 186.0 219 53.0
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 9.9e-45 184.5 219 52.5
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 1.1e-43 181.0 201 54.2
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 2.4e-43 179.9 225 48.9
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 4.2e-43 179.1 219 53.0
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 3.5e-42 176.0 218 49.1
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 3.5e-42 176.0 226 47.8
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 7.8e-42 174.9 220 50.5
Cc00_g02390 Coffea canephora HOM05D000240 ORTHO05D002608 1.7e-41 173.7 192 58.9
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 6.6e-41 171.8 226 48.7
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 2.5e-40 169.9 222 47.7
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 8.1e-39 164.9 222 46.4
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 1.1e-38 164.5 219 51.1
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 1.1e-38 164.5 226 48.7
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 2.4e-38 163.3 234 47.0
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea HOM05D000240 ORTHO05D002608 3.1e-38 162.9 217 47.5
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 5.3e-38 162.2 234 47.0
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 5.3e-38 162.2 222 46.8
Oeu059363.3 Olea europaea HOM05D000240 ORTHO05D002608 6.9e-38 161.8 198 53.5
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 1.5e-37 160.6 234 46.2
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 3.4e-37 159.5 234 46.2
Aqoxy1G00453 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 2.2e-36 156.8 226 45.6
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea HOM05D000240 ORTHO05D002608 2.2e-36 156.8 217 45.6
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 2.2e-36 156.8 226 45.1
VMungo0647G0305 Vigna mungo HOM05D000240 ORTHO05D002608 4.9e-36 155.6 196 48.0
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 5.4e-35 152.1 229 46.3
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 9.3e-35 151.4 207 44.4
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 2.7e-34 149.8 242 45.0
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 2.7e-34 149.8 225 48.0
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 6.0e-34 148.7 222 47.3
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 1.7e-33 147.1 208 46.2
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 8.7e-33 144.8 229 43.2
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 4.3e-32 142.5 207 43.0
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 1.1e-30 137.9 209 40.2
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 2.6e-29 133.3 229 40.2
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 3.4e-29 132.9 224 41.1
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 7.6e-29 131.7 240 40.8
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 8.4e-28 128.3 191 45.5
Ca_12048_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 1.1e-27 127.9 209 42.6
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 8.7e-25 118.2 203 40.9
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.9e-24 117.1 117 59.8
ATR0580G186 Amborella trichopoda HOM05D000240 ORTHO05D002608 3.1e-22 109.8 215 39.1
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 4.0e-22 109.4 178 43.8
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 1.2e-18 97.8 224 40.6
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 3.0e-17 93.2 225 32.4
BraA10t45353Z Brassica rapa HOM05D000240 ORTHO05D002608 1.9e-16 90.5 189 36.5
Psat6g089440 Pisum sativum HOM05D000240 ORTHO05D002608 2.5e-16 90.1 226 32.3
Peaxi162Scf01010g00017 Petunia axillaris HOM05D000240 ORTHO05D002608 4.3e-16 89.4 143 45.5
HPP92_010739 Vanilla planifolia HOM05D000240 ORTHO05D002608 4.3e-16 89.4 172 38.4
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 7.4e-16 88.6 89 57.3
Zm00001eb313020 Zea mays HOM05D000240 ORTHO05D002608 1.6e-15 87.4 205 34.6
MD12G1093000 Malus domestica HOM05D000240 ORTHO05D002608 2.8e-15 86.7 103 55.3
MBI14_g46138_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D016689 5.3e-14 82.4 73 60.3
Ciclev10004865m.g Citrus clementina HOM05D000240 ORTHO05D002608 1.9e-11 73.9 66 57.6
SGA_v2.0_scaffold57G20198 Striga asiatica HOM05D000240 ORTHO05D002608 1.9e-11 73.9 142 39.4
Ciclev10006521m.g Citrus clementina HOM05D000240 ORTHO05D002608 2.5e-11 73.6 68 57.4
Cpa.g.sc5.185 Carica papaya HOM05D000240 ORTHO05D002608 2.1e-10 70.5 75 52.0
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 3.5e-10 69.7 69 56.5
MD12G1093100 Malus domestica HOM05D000240 ORTHO05D002608 4.6e-10 69.3 76 50.0
SEGI_22073 Sequoiadendron giganteum HOM05D000240 ORTHO05D002608 1.1e-08 64.7 200 31.0
AL4G43360 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 4.3e-08 62.8 117 42.7
FAN25G3688 Fragaria x ananassa HOM05D000240 ORTHO05D002608 7.4e-08 62.0 58 60.3


User provided reference genes

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