Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 2.6e-46 188.3 93 100.0
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 9.8e-46 186.4 93 98.9
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 2.5e-33 145.2 93 79.6
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 1.7e-29 132.5 95 75.8
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 3.7e-29 131.3 86 79.1
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 1.0e-26 123.2 96 68.8
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 1.7e-26 122.5 86 73.3
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 5.1e-26 120.9 96 67.7
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 6.6e-26 120.6 96 67.7
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 6.6e-26 120.6 96 67.7
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 5.6e-25 117.5 85 71.8
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 1.6e-24 115.9 92 69.6
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 2.8e-24 115.2 93 65.6
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.8e-24 115.2 93 65.6
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.8e-24 115.2 93 65.6
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 2.8e-24 115.2 89 70.8
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 2.8e-24 115.2 96 70.8
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 2.8e-24 115.2 97 62.9
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 4.7e-24 114.4 93 65.6
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 8.1e-24 113.6 92 66.3
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 1.8e-23 112.5 97 61.9
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.3e-23 112.1 92 65.2
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.1e-23 111.7 93 64.5
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 2.0e-22 109.0 88 63.6
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 2.0e-22 109.0 88 68.2
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 3.4e-22 108.2 94 68.1
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 7.6e-22 107.1 95 63.2
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 9.9e-22 106.7 86 61.6
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 1.3e-21 106.3 92 65.2
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 1.3e-21 106.3 92 64.1
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 1.3e-21 106.3 95 58.9
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 1.1e-20 103.2 85 67.1
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 7.1e-20 100.5 94 59.6
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 2.7e-19 98.6 94 59.6
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 3.5e-19 98.2 86 65.1
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 3.5e-19 98.2 93 55.9
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 2.3e-18 95.5 97 59.8
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 3.0e-18 95.1 90 62.2
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 5.1e-18 94.4 96 55.2
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 1.1e-17 93.2 85 61.2
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 3.3e-17 91.7 107 52.3
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.8e-16 88.6 84 56.0
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 4.7e-16 87.8 95 51.6
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 8.1e-16 87.0 84 54.8
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 1.1e-15 86.7 92 55.4
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 3.1e-15 85.1 82 58.5
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 4.0e-15 84.7 67 71.6
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 6.8e-15 84.0 91 52.7
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 4.4e-14 81.3 65 70.8
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 7.6e-14 80.5 92 52.2
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 7.6e-14 80.5 92 52.2
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 1.7e-13 79.3 97 52.6
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 2.2e-13 79.0 85 57.6
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.4e-12 76.3 73 57.5
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.4e-12 76.3 73 57.5
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 1.4e-12 76.3 85 55.3
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 3.2e-12 75.1 96 50.0
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 5.4e-12 74.3 85 50.6
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 7.1e-12 73.9 77 51.9
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 9.3e-12 73.6 82 48.8
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 2.1e-11 72.4 77 57.1
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 3.5e-11 71.6 62 62.9
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 4.6e-11 71.2 95 50.5
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 6.0e-11 70.9 105 43.8
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 7.8e-11 70.5 86 44.2
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 1.0e-10 70.1 107 43.0
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 1.0e-10 70.1 96 51.0
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 1.3e-10 69.7 105 42.9
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 1.3e-10 69.7 105 42.9
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 1.7e-10 69.3 106 42.5
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 1.7e-10 69.3 111 45.0
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 8.7e-10 67.0 101 43.6
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 1.1e-09 66.6 108 41.7
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 2.5e-09 65.5 103 42.7
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 2.8e-08 62.0 109 40.4
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 2.8e-08 62.0 109 40.4
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 4.8e-08 61.2 111 40.5
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 4.8e-08 61.2 109 40.4
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 6.2e-08 60.8 110 40.0
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 6.2e-08 60.8 110 40.0
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 1.1e-07 60.1 87 40.2
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 1.4e-07 59.7 95 42.1
Zm00001eb293570 Zea mays HOM05D002019 ORTHO05D010005 9.0e-07 57.0 58 51.7
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 1.2e-06 56.6 59 52.5


User provided reference genes

Program Settings