Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 3.7e-172 608.2 327 100.0
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 2.6e-170 602.1 327 99.1
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 5.5e-43 179.1 312 37.8
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 8.8e-41 171.8 312 35.9
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 1.5e-40 171.0 312 35.9
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 9.1e-38 161.8 320 37.2
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 1.7e-36 157.5 323 35.0
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 5.5e-35 152.5 316 32.0
HanXRQChr09g0244301 Helianthus annuus HOM05D012567 ORTHO05D004696 6.1e-34 149.1 320 37.8
HanXRQChr03g0074181 Helianthus annuus HOM05D012567 ORTHO05D004696 2.8e-31 140.2 232 36.2
Cc06_g13850 Coffea canephora HOM05D012567 ORTHO05D004696 9.1e-30 135.2 303 31.7
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.2e-29 134.8 322 31.1
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 1.6e-29 134.4 319 32.3
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 7.7e-29 132.1 291 32.3
Lsat_1_v5_gn_7_52601 Lactuca sativa HOM05D012567 ORTHO05D004696 1.0e-28 131.7 319 33.9
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.1e-27 128.3 289 30.8
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 2.5e-27 127.1 323 32.2
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 3.6e-26 123.2 241 33.6
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 8.8e-25 118.6 296 30.1
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 2.0e-24 117.5 317 32.2
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 3.4e-24 116.7 300 29.7
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 9.8e-24 115.2 300 31.0
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 4.8e-23 112.8 303 29.0
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.3e-23 112.5 310 30.3
Dinv41298 Davidia involucrata HOM05D004960 ORTHO05D004696 1.2e-21 108.2 286 31.1
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 7.7e-21 105.5 306 29.4
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 7.7e-21 105.5 306 30.4
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 7.7e-21 105.5 296 30.7
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.1e-19 101.7 296 30.4
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.1e-18 97.4 306 31.0
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.1e-18 97.4 314 29.0
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 3.6e-18 96.7 314 30.9
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 6.1e-18 95.9 313 26.8
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 6.1e-18 95.9 300 25.3
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 8.0e-18 95.5 248 31.9
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 1.0e-17 95.1 295 32.2
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 8.8e-17 92.0 290 28.6
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 1.2e-16 91.7 317 27.8
Actinidia38795 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.5e-16 91.3 303 29.0
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.5e-16 91.3 319 28.2
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 1.5e-16 91.3 305 27.5
Manes.13G066000 Manihot esculenta HOM05D004960 ORTHO05D004696 2.6e-16 90.5 290 27.9
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.4e-16 90.1 287 28.2
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 3.4e-16 90.1 303 30.0
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 4.4e-16 89.7 266 30.1
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 5.7e-16 89.4 221 30.8
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 5.7e-16 89.4 297 29.0
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 7.5e-16 89.0 313 26.2
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 7.5e-16 89.0 321 29.3
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 1.7e-15 87.8 311 29.6
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 1.7e-15 87.8 298 28.2
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.2e-15 87.4 242 35.5
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 2.8e-15 87.0 308 26.9
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 3.7e-15 86.7 315 26.0
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 4.9e-15 86.3 318 26.7
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.4e-14 84.7 312 25.3
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.8e-14 84.3 307 26.4
PSO063G2425 Papaver somniferum HOM05D004960 ORTHO05D004696 1.8e-14 84.3 308 26.3
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 4.1e-14 83.2 294 27.6
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 4.1e-14 83.2 294 27.6
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-13 81.6 290 27.2
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 2.7e-13 80.5 301 27.2
Aqoxy7G03202 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 3.5e-13 80.1 311 27.0
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 5.9e-13 79.3 300 26.0
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 7.7e-13 79.0 291 26.5
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 7.7e-13 79.0 296 25.3
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 1.0e-12 78.6 311 24.8
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 1.7e-12 77.8 288 27.8
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 1.7e-12 77.8 288 25.7
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.7e-12 77.8 234 29.9
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 1.7e-12 77.8 296 26.4
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 3.8e-12 76.6 298 25.2
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 5.0e-12 76.3 291 26.1
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 5.0e-12 76.3 284 26.1
MBI14_g30691_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 8.6e-12 75.5 298 25.5
MBI14_g30699_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 8.6e-12 75.5 318 28.6
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.1e-11 75.1 236 29.7
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.5e-11 74.7 334 29.0
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 2.5e-11 73.9 204 28.4
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 2.5e-11 73.9 319 25.1
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 3.3e-11 73.6 235 28.1
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 7.2e-11 72.4 200 29.0
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 7.2e-11 72.4 291 30.6
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.6e-10 71.2 303 24.4
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 2.8e-10 70.5 227 27.3
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 3.6e-10 70.1 234 26.9
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 6.1e-10 69.3 306 26.5
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 6.1e-10 69.3 218 26.6
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 6.1e-10 69.3 218 26.6
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 6.1e-10 69.3 219 27.4
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 8.0e-10 68.9 273 26.7
CSS0019658 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.0e-09 68.6 288 26.4
DCAR_014401 Daucus carota HOM05D001062 ORTHO05D000884 3.0e-09 67.0 330 25.2
PGR102G2354 Punica granatum HOM05D001062 ORTHO05D000884 4.0e-09 66.6 315 24.1
TWI12G0641 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 4.0e-09 66.6 214 28.5
VMungo0647G0121 Vigna mungo HOM05D001062 ORTHO05D000884 4.0e-09 66.6 314 27.1
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 1.2e-08 65.1 291 25.4
Ciclev10003650m.g Citrus clementina HOM05D001062 ORTHO05D000884 1.5e-08 64.7 301 26.2
Lj1g0010358 Lotus japonicus HOM05D001062 ORTHO05D000884 1.5e-08 64.7 322 26.1
Sabra02G0057800 Salix brachista HOM05D001062 ORTHO05D000884 1.5e-08 64.7 248 27.0
FAN11G1677 Fragaria x ananassa HOM05D000001 ORTHO05D009942 2.0e-08 64.3 291 26.5
Sabra02G0057700 Salix brachista HOM05D001062 ORTHO05D000884 2.0e-08 64.3 325 24.3
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 2.6e-08 63.9 298 24.5
Hma1.2p1_0642F.1_g194390 Hydrangea macrophylla HOM05D001062 ORTHO05D000884 2.6e-08 63.9 301 27.2
Manes.08G144300 Manihot esculenta HOM05D000001 ORTHO05D009942 2.6e-08 63.9 257 29.6
FvH4_3g13180 Fragaria vesca HOM05D000001 ORTHO05D009942 3.4e-08 63.5 291 26.5
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 3.4e-08 63.5 297 25.6
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 5.7e-08 62.8 212 28.8
PSO675G9215 Papaver somniferum HOM05D001062 ORTHO05D000884 7.5e-08 62.4 238 29.0
FAN21G0240 Fragaria x ananassa HOM05D008511 ORTHO05D010691 9.8e-08 62.0 230 27.4
Pp3c5_10650 Physcomitrium patens HOM05D001062 ORTHO05D000884 9.8e-08 62.0 323 25.1
Eucgr.F04013 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.3e-07 61.6 301 22.9
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 1.3e-07 61.6 207 27.1
FAN25G3648 Fragaria x ananassa HOM05D000001 ORTHO05D009942 1.7e-07 61.2 291 26.1
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 1.7e-07 61.2 298 24.2
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 1.7e-07 61.2 188 29.3
PSO541G0590 Papaver somniferum HOM05D001062 ORTHO05D000884 2.2e-07 60.8 233 27.9
Ciclev10001753m.g Citrus clementina HOM05D001062 ORTHO05D000884 2.9e-07 60.5 334 27.2
Duzib116G0744 Durio zibethinus HOM05D001062 ORTHO05D000884 2.9e-07 60.5 315 27.0
PGR044G0276 Punica granatum HOM05D001062 ORTHO05D000884 2.9e-07 60.5 323 23.5
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 3.7e-07 60.1 308 25.0
Gohir.A05G384300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 3.7e-07 60.1 307 26.4
Lalb_Chr25g0281621 Lupinus albus HOM05D001062 ORTHO05D000884 3.7e-07 60.1 341 25.8
ClCG08G002860 Citrullus lanatus HOM05D001062 ORTHO05D000884 4.9e-07 59.7 308 24.7
Atru.chr4.907 Acer truncatum HOM05D001062 ORTHO05D000884 6.4e-07 59.3 314 24.5
Thecc.01G133100 Theobroma cacao HOM05D001062 ORTHO05D000884 6.4e-07 59.3 308 26.3
TAR381G1261 Trochodendron aralioides HOM05D001062 ORTHO05D000884 6.4e-07 59.3 223 28.3
ClCG11G017010 Citrullus lanatus HOM05D001062 ORTHO05D000884 8.3e-07 58.9 225 26.7
MELO3C004032.2 Cucumis melo HOM05D000001 ORTHO05D009942 8.3e-07 58.9 244 27.9
Sed0001987 Sechium edule HOM05D001062 ORTHO05D000884 8.3e-07 58.9 307 23.5
Sed0010695 Sechium edule HOM05D001062 ORTHO05D000884 1.1e-06 58.5 325 24.9
TWI12G0285 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.1e-06 58.5 292 24.7
Glyma.11G178501 Glycine max HOM05D001062 ORTHO05D000884 1.4e-06 58.2 339 24.8
Glyma.13G037000 Glycine max HOM05D001062 ORTHO05D000884 1.4e-06 58.2 339 24.8
Gohir.D04G031300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 1.4e-06 58.2 309 26.2
Gorai.012G035400 Gossypium raimondii HOM05D001062 ORTHO05D000884 1.4e-06 58.2 309 26.2
Nn8g40269 Nelumbo nucifera HOM05D000001 ORTHO05D009942 1.4e-06 58.2 289 26.6
Prupe.1G096000 Prunus persica HOM05D000001 ORTHO05D009942 1.8e-06 57.8 293 27.0
Rhsim11G0075400 Rhododendron simsii HOM05D001062 ORTHO05D000884 1.8e-06 57.8 251 29.5
FAN16G0931 Fragaria x ananassa HOM05D000001 ORTHO05D009942 2.4e-06 57.4 291 25.8
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 2.4e-06 57.4 151 29.1
Actinidia15174 Actinidia chinensis HOM05D001062 ORTHO05D000884 3.2e-06 57.0 315 26.7
Duzib264G0268 Durio zibethinus HOM05D001062 ORTHO05D000884 3.2e-06 57.0 311 24.8
Lsat_1_v5_gn_6_97761 Lactuca sativa HOM05D001062 ORTHO05D000884 3.2e-06 57.0 213 27.2
MD13G1261300 Malus domestica HOM05D000001 ORTHO05D009942 3.2e-06 57.0 304 27.0
Pp3c6_23080 Physcomitrium patens HOM05D001062 ORTHO05D000884 3.2e-06 57.0 323 23.5
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 3.2e-06 57.0 111 36.0
PGR008G0005 Punica granatum HOM05D001062 ORTHO05D000884 3.2e-06 57.0 321 25.9
PGR119G1555 Punica granatum HOM05D001062 ORTHO05D000884 3.2e-06 57.0 321 25.9
SEGI_00560 Sequoiadendron giganteum HOM05D001062 ORTHO05D000884 3.2e-06 57.0 309 23.9
CiPaw.16G018900 Carya illinoinensis HOM05D001062 ORTHO05D000884 4.1e-06 56.6 307 27.4
PGR131G0003 Punica granatum HOM05D001062 ORTHO05D000884 4.1e-06 56.6 290 25.9
TAR625G1044 Trochodendron aralioides HOM05D001062 ORTHO05D000884 4.1e-06 56.6 221 28.1
Haze_25242 Corylus avellana HOM05D001062 ORTHO05D000884 5.4e-06 56.2 315 25.4
CsaV3_6G002970 Cucumis sativus L. HOM05D001062 ORTHO05D000884 5.4e-06 56.2 310 24.5
Nn5g28536 Nelumbo nucifera HOM05D001062 ORTHO05D000884 5.4e-06 56.2 299 25.8
Potri.002G074200 Populus trichocarpa HOM05D001062 ORTHO05D000884 5.4e-06 56.2 304 23.7
Potri.007G105600 Populus trichocarpa HOM05D001062 ORTHO05D000884 5.4e-06 56.2 332 25.6
TAR628G1608 Trochodendron aralioides HOM05D001062 ORTHO05D000884 5.4e-06 56.2 322 23.3
COL.COLO4_35750 Corchorus olitorius HOM05D001062 ORTHO05D000884 7.0e-06 55.8 230 27.0
Migut.J01431 Erythranthe guttata HOM05D015143 ORTHO05D004696 7.0e-06 55.8 196 29.6
Peaxi162Scf00457g00315 Petunia axillaris HOM05D004960 ORTHO05D004696 7.0e-06 55.8 70 41.4
CANSAT01G0561 Cannabis sativa HOM05D001062 ORTHO05D000884 9.2e-06 55.5 317 24.6
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 9.2e-06 55.5 213 29.1
Cfa000695 Carpinus fangiana HOM05D001062 ORTHO05D000884 9.2e-06 55.5 236 25.0
ClCG11G012210 Citrullus lanatus HOM05D000001 ORTHO05D009942 9.2e-06 55.5 289 27.7
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 9.2e-06 55.5 183 29.0
Migut.C01098 Erythranthe guttata HOM05D001062 ORTHO05D000884 9.2e-06 55.5 310 24.8
Glyma.14G118500 Glycine max HOM05D001062 ORTHO05D000884 9.2e-06 55.5 336 24.7
Lj1g0013489 Lotus japonicus HOM05D001062 ORTHO05D000884 9.2e-06 55.5 226 27.9
Medtr1g029440 Medicago truncatula HOM05D001062 ORTHO05D000884 9.2e-06 55.5 338 26.3
Sabra07G0086400 Salix brachista HOM05D001062 ORTHO05D000884 9.2e-06 55.5 346 25.1


User provided reference genes

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