Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 0.0e+00 1391.7 762 100.0
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 0.0e+00 1377.1 763 99.3
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 8.8e-286 986.9 794 72.8
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.9e-272 942.6 937 63.1
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 4.3e-272 941.4 825 69.0
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.6e-266 921.4 795 69.6
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 6.0e-266 921.0 788 71.8
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 8.3e-260 900.6 791 68.5
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 4.3e-256 888.3 793 67.0
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 7.6e-253 877.5 773 68.3
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 2.3e-249 865.9 772 67.0
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 5.1e-249 864.8 772 67.0
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 2.1e-247 859.4 810 64.2
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 8.7e-241 837.4 787 64.3
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.5e-237 826.6 787 63.0
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 3.4e-237 825.5 797 63.6
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 9.9e-237 823.9 789 64.0
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 1.1e-235 820.5 793 62.5
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 3.3e-232 808.9 783 62.8
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 3.1e-230 802.4 804 61.7
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 4.0e-230 802.0 791 63.6
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 1.2e-226 790.4 775 64.3
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 7.9e-226 787.7 822 59.7
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 3.7e-223 778.9 770 61.0
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 4.5e-221 771.9 776 61.9
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.2e-219 765.8 775 62.3
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 7.1e-219 764.6 795 60.9
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 7.9e-218 761.1 763 61.5
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 2.3e-217 759.6 717 64.2
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 3.7e-215 752.3 779 61.0
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 6.3e-215 751.5 776 59.3
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 1.4e-214 750.4 770 59.7
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 9.0e-214 747.7 775 59.5
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.0e-212 744.2 782 58.6
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.3e-212 743.8 774 61.0
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.4e-211 740.3 774 60.7
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.9e-211 740.0 783 60.4
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.9e-211 740.0 783 60.4
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 3.2e-211 739.2 810 58.6
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 3.2e-211 739.2 783 58.9
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 4.2e-211 738.8 791 58.8
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 6.7e-209 731.5 771 59.7
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.4e-206 723.8 798 57.6
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 2.4e-206 723.0 793 58.1
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 5.3e-206 721.8 798 58.4
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.0e-204 717.6 797 57.1
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 1.3e-204 717.2 787 59.6
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 3.8e-204 715.7 769 59.4
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 5.0e-204 715.3 782 58.1
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 6.5e-204 714.9 811 57.7
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 1.4e-201 707.2 792 55.9
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 8.8e-201 704.5 780 57.1
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 2.0e-200 703.4 790 56.8
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 7.4e-200 701.4 798 56.8
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 1.7e-199 700.3 813 56.1
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 2.4e-198 696.4 780 56.5
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 4.1e-198 695.7 777 57.5
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 6.9e-198 694.9 777 57.0
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.5e-197 693.7 770 57.4
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 1.5e-197 693.7 797 56.0
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 1.0e-196 691.0 779 56.1
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 2.9e-196 689.5 785 56.2
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 8.5e-196 688.0 784 56.8
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 4.7e-194 682.2 788 55.7
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 6.1e-194 681.8 778 55.1
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 3.0e-193 679.5 766 56.8
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 8.8e-193 677.9 784 56.5
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.5e-192 677.2 784 56.0
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.6e-192 676.4 775 56.8
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 1.1e-190 671.0 778 55.4
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 2.6e-189 666.4 781 55.3
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 1.2e-186 657.5 800 54.0
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.6e-186 657.1 766 55.2
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.8e-185 653.7 774 54.5
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 9.7e-184 647.9 852 50.8
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 2.8e-183 646.4 707 57.3
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 2.4e-182 643.3 823 53.2
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 3.1e-182 642.9 772 54.9
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 4.1e-182 642.5 777 54.2
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 1.7e-180 637.1 695 57.7
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 1.6e-178 630.6 790 53.8
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 4.7e-178 629.0 780 53.7
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 4.0e-177 625.9 776 53.1
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 3.1e-174 616.3 783 53.4
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 9.1e-174 614.8 780 52.6
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.7e-172 610.5 609 61.2
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 2.3e-172 610.1 778 51.9
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 1.5e-171 607.4 609 60.9
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 2.1e-170 603.6 793 52.5
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 3.6e-170 602.8 781 51.7
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 1.0e-169 601.3 528 67.2
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 5.9e-165 585.5 605 60.2
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.0e-164 584.7 781 50.8
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 1.7e-164 583.9 773 50.5
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.1e-163 581.3 777 48.8
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.5e-163 580.9 630 57.8
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 5.6e-163 578.9 776 49.9
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 3.6e-162 576.2 741 50.9
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 3.4e-160 569.7 746 52.3
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.7e-159 567.4 784 49.1
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 8.3e-159 565.1 832 47.6
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 1.4e-158 564.3 704 53.4
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 3.3e-155 553.1 768 47.4
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 4.7e-154 549.3 784 47.8
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 4.7e-154 549.3 782 48.2
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 4.7e-154 549.3 784 47.8
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 6.2e-154 548.9 781 48.8
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 8.0e-154 548.5 784 47.8
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 8.0e-154 548.5 804 48.8
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 1.2e-152 544.7 782 48.1
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 3.4e-152 543.1 771 47.7
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 7.5e-152 542.0 684 50.1
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 4.9e-151 539.3 797 46.0
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 1.9e-150 537.3 697 49.6
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 2.4e-150 537.0 771 47.0
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.6e-149 534.3 784 47.4
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 3.5e-149 533.1 746 50.1
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 1.3e-148 531.2 520 61.2
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 2.3e-148 530.4 767 47.1
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 3.6e-146 523.1 783 45.5
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 6.8e-145 518.8 792 47.0
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 2.4e-142 510.4 771 46.7
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 2.1e-141 507.3 783 47.4
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 3.0e-140 503.4 772 44.7
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 5.1e-140 502.7 778 45.8
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 1.1e-139 501.5 701 49.1
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 3.3e-139 500.0 687 48.0
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 3.4e-136 490.0 756 45.9
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 2.2e-135 487.3 667 48.3
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 3.5e-133 479.9 783 45.7
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 5.1e-132 476.1 746 44.6
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 7.3e-123 445.7 597 49.1
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 1.3e-111 408.3 498 53.2
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.4e-105 388.3 701 41.9
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 6.9e-105 386.0 377 62.3
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 5.1e-100 369.8 359 62.7
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 8.7e-100 369.0 349 61.6
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 1.8e-97 361.3 382 59.2
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 1.2e-96 358.6 850 35.8
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 1.0e-87 328.9 388 52.1
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.2e-86 323.6 399 55.4
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.1e-81 308.9 395 54.4
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-64 252.3 251 61.4
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 1.6e-64 251.9 337 52.2
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.4e-60 238.8 768 31.9
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 3.0e-60 237.7 379 43.3
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 9.5e-54 216.1 190 69.5
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 5.9e-48 196.8 324 40.4
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 2.6e-43 181.4 170 66.5
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 7.8e-40 169.9 145 60.7
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.7e-37 160.6 178 56.7
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 7.5e-35 153.3 138 61.6
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 4.1e-33 147.5 182 53.3
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 1.8e-28 132.1 263 38.8
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 4.0e-28 131.0 370 32.2
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 3.7e-26 124.4 107 66.4
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 9.2e-25 119.8 307 32.9
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 3.0e-23 114.8 118 55.1
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 8.6e-23 113.2 85 72.9
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 8.1e-21 106.7 143 58.7
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.2e-19 102.8 108 55.6
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.4e-17 95.9 62 83.9
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 1.2e-16 92.8 240 33.3
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 5.1e-15 87.4 207 36.2
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 8.7e-15 86.7 76 61.8
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.2e-13 82.8 67 65.7
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.2e-13 82.8 76 59.2
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 5.3e-12 77.4 260 30.4
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 3.4e-11 74.7 224 31.2
arahy.Tifrunner.gnm1.ann1.W0C6E5 Arachis hypogaea HOM05D000200 ORTHO05D000262 1.4e-09 69.3 119 43.7
arahy.Tifrunner.gnm1.ann1.B4ZXCR Arachis hypogaea HOM05D003721 ORTHO05D004303 1.7e-07 62.4 66 56.1
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 1.1e-06 59.7 314 29.6
arahy.Tifrunner.gnm1.ann1.2H8IEQ Arachis hypogaea HOM05D003721 ORTHO05D004303 1.9e-06 58.9 66 54.5
arahy.Tifrunner.gnm1.ann1.EAH0NM Arachis hypogaea HOM05D003721 ORTHO05D004303 1.9e-06 58.9 66 54.5
arahy.Tifrunner.gnm1.ann1.4H30G8 Arachis hypogaea HOM05D003721 ORTHO05D004303 2.5e-06 58.5 66 53.0
arahy.Tifrunner.gnm1.ann1.TR1UXP Arachis hypogaea HOM05D003721 ORTHO05D004303 2.5e-06 58.5 66 53.0
arahy.Tifrunner.gnm1.ann1.BE33XR Arachis hypogaea HOM05D003721 ORTHO05D004303 3.3e-06 58.2 63 54.0


User provided reference genes

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