Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.7e-47 191.8 106 100.0
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.5e-34 149.4 106 78.3
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 4.4e-34 147.9 106 78.3
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 1.7e-30 136.0 106 70.8
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 9.5e-29 130.2 106 70.8
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 2.1e-28 129.0 106 67.9
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 3.6e-28 128.3 99 73.7
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.7e-28 127.9 106 67.0
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 6.2e-28 127.5 106 65.1
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 5.2e-27 124.4 106 66.0
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 8.9e-27 123.6 106 63.2
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 1.5e-26 122.9 106 67.9
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 1.5e-26 122.9 106 64.2
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.6e-26 122.1 106 65.1
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 2.6e-26 122.1 106 65.1
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.6e-26 122.1 106 63.2
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 4.4e-26 121.3 106 65.1
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 3.7e-25 118.2 106 67.0
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 1.4e-24 116.3 106 66.0
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 9.2e-24 113.6 103 63.1
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.0e-23 112.5 106 60.4
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.5e-23 111.7 107 63.6
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 3.5e-23 111.7 99 66.7
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 6.0e-23 110.9 100 64.0
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 6.0e-23 110.9 104 64.4
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 6.0e-23 110.9 109 64.2
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 6.0e-23 110.9 100 64.0
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.0e-22 110.2 81 71.6
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 1.3e-22 109.8 83 75.9
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.3e-22 109.8 102 61.8
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.7e-22 109.4 100 62.0
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.7e-22 109.4 106 62.3
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.7e-22 109.4 94 67.0
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.3e-22 109.0 108 63.0
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 2.3e-22 109.0 110 60.9
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 2.3e-22 109.0 106 64.2
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.3e-22 109.0 100 62.0
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 3.0e-22 108.6 100 61.0
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 3.9e-22 108.2 94 64.9
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 3.9e-22 108.2 105 58.1
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 3.9e-22 108.2 105 58.1
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 5.0e-22 107.8 106 60.4
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 8.6e-22 107.1 100 61.0
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 1.1e-21 106.7 106 59.4
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.1e-21 106.7 105 58.1
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 1.1e-21 106.7 106 55.7
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 3.3e-21 105.1 94 66.0
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 3.3e-21 105.1 106 61.3
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.3e-21 104.8 111 59.5
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 7.3e-21 104.0 98 62.2
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 9.5e-21 103.6 98 62.2
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.2e-20 103.2 98 61.2
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.1e-20 102.4 100 58.0
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 2.8e-20 102.1 98 61.2
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 2.8e-20 102.1 106 59.4
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 6.2e-20 100.9 94 63.8
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.2e-20 100.9 99 57.6
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 8.1e-20 100.5 100 61.0
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 1.1e-19 100.1 106 56.6
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.4e-19 99.8 94 59.6
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 1.8e-19 99.4 92 60.9
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.8e-19 99.4 100 59.0
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 3.1e-19 98.6 107 54.2
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 4.0e-19 98.2 106 53.8
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 5.2e-19 97.8 107 57.9
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 6.8e-19 97.4 85 67.1
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.2e-18 96.7 107 57.0
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.5e-18 96.3 101 55.4
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 2.6e-18 95.5 106 53.8
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 2.6e-18 95.5 107 56.1
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.6e-18 95.5 103 55.3
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 3.4e-18 95.1 98 57.1
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 5.8e-18 94.4 93 57.0
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 7.5e-18 94.0 100 55.0
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 7.5e-18 94.0 100 55.0
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 7.5e-18 94.0 102 54.9
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 9.8e-18 93.6 81 65.4
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 9.8e-18 93.6 108 55.6
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 9.8e-18 93.6 93 55.9
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 1.3e-17 93.2 80 65.0
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.3e-17 93.2 107 56.1
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.3e-17 93.2 102 57.8
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.7e-17 92.8 80 63.8
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 1.7e-17 92.8 106 54.7
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 2.2e-17 92.4 100 59.0
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 6.4e-17 90.9 108 54.6
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 6.4e-17 90.9 107 54.2
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 8.3e-17 90.5 93 57.0
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 1.1e-16 90.1 96 54.2
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 1.4e-16 89.7 81 60.5
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.9e-16 89.4 82 63.4
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 4.1e-16 88.2 101 55.4
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 5.4e-16 87.8 72 68.1
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 5.4e-16 87.8 107 53.3
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 7.1e-16 87.4 134 47.0
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.1e-16 87.4 102 52.9
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 7.1e-16 87.4 95 52.6
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 1.6e-15 86.3 76 64.5
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 4.6e-15 84.7 57 75.4
Actinidia26179 Actinidia chinensis HOM05D004289 ORTHO05D005141 4.6e-15 84.7 64 76.6
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 4.6e-15 84.7 110 49.1
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 4.6e-15 84.7 95 55.8
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 6.0e-15 84.3 82 61.0
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 6.0e-15 84.3 106 51.9
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 6.0e-15 84.3 106 52.8
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.0e-14 83.6 100 55.0
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.0e-14 83.6 98 51.0
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.3e-14 83.2 106 49.1
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.3e-14 83.2 106 49.1
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.7e-14 82.8 97 56.7
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 1.7e-14 82.8 97 51.5
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 2.3e-14 82.4 85 60.0
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 2.3e-14 82.4 94 54.3
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.0e-14 82.0 106 49.1
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 5.1e-14 81.3 92 56.5
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 6.6e-14 80.9 106 49.1
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 8.6e-14 80.5 90 54.4
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 1.1e-13 80.1 107 50.5
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 1.9e-13 79.3 94 54.3
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 3.3e-13 78.6 109 47.7
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.6e-13 77.8 101 54.5
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 9.5e-13 77.0 99 49.5
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 9.5e-13 77.0 99 52.5
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 9.5e-13 77.0 95 50.5
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 9.5e-13 77.0 90 51.1
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 1.2e-12 76.6 95 54.7
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.2e-12 76.6 99 49.5
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 2.1e-12 75.9 89 53.9
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 2.1e-12 75.9 91 52.7
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.6e-12 75.1 72 59.7
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 3.6e-12 75.1 106 49.1
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 4.7e-12 74.7 61 65.6
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 8.1e-12 73.9 90 51.1
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.1e-11 73.6 74 56.8
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 1.4e-11 73.2 102 45.1
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 1.8e-11 72.8 74 51.4
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.8e-11 72.8 99 49.5
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 2.3e-11 72.4 53 69.8
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 3.1e-11 72.0 107 49.5
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.1e-11 72.0 66 62.1
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 4.0e-11 71.6 106 46.2
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 6.8e-11 70.9 98 52.0
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 6.8e-11 70.9 99 45.5
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 8.9e-11 70.5 105 50.5
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 1.2e-10 70.1 95 47.4
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 2.0e-10 69.3 109 49.5
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.0e-10 69.3 79 55.7
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 3.4e-10 68.6 62 58.1
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 9.9e-10 67.0 63 61.9
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 1.3e-09 66.6 103 48.5
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 2.2e-09 65.9 85 48.2
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 2.9e-09 65.5 106 46.2
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.9e-09 65.5 91 47.3
Dinv29606 Davidia involucrata HOM05D004289 ORTHO05D005141 6.4e-09 64.3 76 57.9
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 6.4e-09 64.3 92 48.9
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 2.4e-08 62.4 97 43.3
Dinv19426 Davidia involucrata HOM05D004289 ORTHO05D005141 2.4e-08 62.4 54 66.7
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 7.1e-08 60.8 89 43.8
Peaxi162Scf00011g00155 Petunia axillaris HOM05D004289 ORTHO05D005141 1.6e-07 59.7 83 48.2
Lsat_1_v5_gn_7_75620 Lactuca sativa HOM05D004289 ORTHO05D233411 2.7e-07 58.9 106 44.3
PGSC0003DMG400024883 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.7e-06 56.2 79 49.4


User provided reference genes

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