Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038270 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 3.2e-111 405.2 221 100.0
CSS0009894 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.4e-18 96.7 61 77.0
vmacro04187 Vaccinium macrocarpon HOM05D006050 ORTHO05D030710 2.7e-17 93.2 78 60.3
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 1.7e-16 90.5 71 64.8
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 3.0e-16 89.7 72 56.9
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 1.1e-15 87.8 92 56.5
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.1e-15 87.8 72 54.2
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 1.5e-15 87.4 70 58.6
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 1.9e-15 87.0 71 64.8
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 2.5e-15 86.7 69 59.4
CSS0007099 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 1.6e-14 84.0 61 65.6
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 2.8e-14 83.2 73 56.2
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 3.6e-14 82.8 70 58.6
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 4.7e-14 82.4 74 60.8
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 8.1e-14 81.6 68 58.8
unitig_32.g11518 Utricularia gibba HOM05D006050 ORTHO05D007457 8.1e-14 81.6 80 51.2
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.4e-13 80.9 72 51.4
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 1.4e-13 80.9 81 51.9
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 1.8e-13 80.5 79 49.4
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 1.8e-13 80.5 71 56.3
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 3.1e-13 79.7 79 48.1
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 3.1e-13 79.7 69 56.5
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 4.0e-13 79.3 69 60.9
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 5.2e-13 79.0 57 66.7
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 5.2e-13 79.0 73 52.1
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 6.8e-13 78.6 72 59.7
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 1.5e-12 77.4 113 37.2
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 1.5e-12 77.4 75 53.3
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 2.0e-12 77.0 72 48.6
AUR62030211 Chenopodium quinoa HOM05D006050 ORTHO05D007457 2.0e-12 77.0 79 46.8
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 2.0e-12 77.0 69 55.1
Sopen02g019650 Solanum pennellii HOM05D006050 ORTHO05D007457 2.0e-12 77.0 84 46.4
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 4.4e-12 75.9 73 53.4
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 5.8e-12 75.5 72 52.8
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 7.6e-12 75.1 51 70.6
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 9.9e-12 74.7 68 52.9
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 1.3e-11 74.3 68 55.9
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 2.2e-11 73.6 68 50.0
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 3.8e-11 72.8 83 45.8
COL.COLO4_31087 Corchorus olitorius HOM05D006050 ORTHO05D007457 3.8e-11 72.8 77 49.4
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 6.4e-11 72.0 67 55.2
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 1.1e-10 71.2 72 55.6
unitig_32.g11513 Utricularia gibba HOM05D057528 ORTHO05D030710 1.1e-10 71.2 74 48.6
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 3.2e-10 69.7 71 57.7
RcHm_v2.0_Chr3g0484711 Rosa chinensis HOM05D000003 ORTHO05D000004 4.1e-10 69.3 59 54.2
RcHm_v2.0_Chr4g0393411 Rosa chinensis HOM05D000003 ORTHO05D000004 4.1e-10 69.3 58 55.2
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 7.1e-10 68.6 71 46.5
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 7.1e-10 68.6 67 52.2
Glyma.13G217500 Glycine max HOM05D006050 ORTHO05D007457 9.2e-10 68.2 67 52.2
MD06G1023000 Malus domestica HOM05D000003 ORTHO05D000004 1.6e-09 67.4 59 49.2
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 2.1e-09 67.0 70 54.3
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 2.7e-09 66.6 69 55.1
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 2.7e-09 66.6 69 55.1
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 2.7e-09 66.6 73 46.6
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 2.7e-09 66.6 90 45.6
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 2.7e-09 66.6 75 48.0
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 3.5e-09 66.2 72 50.0
Cpa.g.sc166.16 Carica papaya HOM05D006050 ORTHO05D007457 4.6e-09 65.9 110 39.1
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 1.0e-08 64.7 66 50.0
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 1.0e-08 64.7 70 51.4
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 1.7e-08 63.9 66 47.0
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 3.0e-08 63.2 69 49.3
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 3.9e-08 62.8 68 50.0
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 5.1e-08 62.4 71 54.9
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 1.9e-07 60.5 97 41.2
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 1.9e-07 60.5 66 45.5
Atru.chr6.713 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-07 60.1 70 44.3
Lalb_Chr18g0055521 Lupinus albus HOM05D006050 ORTHO05D007457 2.5e-07 60.1 67 46.3
Prupe.4G079600 Prunus persica HOM05D006050 ORTHO05D007457 2.5e-07 60.1 67 46.3
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 2.5e-07 60.1 68 47.1
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-07 59.7 70 47.1
MBI10_g02215_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 3.3e-07 59.7 73 47.9
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 5.6e-07 58.9 72 43.1
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 9.6e-07 58.2 55 54.5
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 1.2e-06 57.8 40 70.0
CSS0030341 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-06 57.4 59 44.1
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 1.6e-06 57.4 74 45.9
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 2.8e-06 56.6 88 40.9
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 2.8e-06 56.6 74 43.2
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 3.6e-06 56.2 74 44.6
CSS0007662 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.2e-06 55.5 36 69.4
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 6.2e-06 55.5 70 47.1
arahy.Tifrunner.gnm1.ann1.YE229B Arachis hypogaea HOM05D000003 ORTHO05D000004 8.1e-06 55.1 58 46.6
CSS0041269 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.1e-06 55.1 56 44.6
CANSAT01G0126 Cannabis sativa HOM05D000003 ORTHO05D000004 8.1e-06 55.1 69 37.7
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 8.1e-06 55.1 86 41.9


User provided reference genes

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