Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038251 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.7e-55 219.2 116 100.0
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 1.3e-34 149.8 97 83.5
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 6.3e-34 147.5 97 82.5
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 6.3e-34 147.5 95 83.2
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 1.8e-33 146.0 97 81.4
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 4.1e-33 144.8 97 82.5
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 4.1e-33 144.8 97 81.4
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 4.1e-33 144.8 97 81.4
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 5.3e-33 144.4 97 81.4
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 5.3e-33 144.4 95 81.1
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 1.2e-32 143.3 97 79.4
vmacro19341 Vaccinium macrocarpon HOM05D004313 ORTHO05D005036 1.2e-32 143.3 97 80.4
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 1.5e-32 142.9 97 80.4
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 2.0e-32 142.5 97 80.4
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 2.0e-32 142.5 97 78.4
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 2.0e-32 142.5 97 79.4
Dinv13117 Davidia involucrata HOM05D004313 ORTHO05D005036 2.0e-32 142.5 97 81.4
Actinidia37681 Actinidia chinensis HOM05D004313 ORTHO05D005036 2.6e-32 142.1 97 80.4
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 2.6e-32 142.1 97 79.4
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 3.5e-32 141.7 97 79.4
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 3.5e-32 141.7 97 78.4
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.5e-32 141.4 97 78.4
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.5e-32 141.4 97 78.4
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.5e-32 141.4 97 78.4
MD14G1189400 Malus domestica HOM05D004313 ORTHO05D005036 5.9e-32 141.0 97 79.4
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 5.9e-32 141.0 97 80.4
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 7.7e-32 140.6 97 79.4
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 7.7e-32 140.6 95 80.0
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 1.0e-31 140.2 97 77.3
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 1.0e-31 140.2 97 77.3
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 1.0e-31 140.2 97 79.4
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 1.3e-31 139.8 97 77.3
Atru.chr9.2370 Acer truncatum HOM05D004313 ORTHO05D005036 2.9e-31 138.7 97 76.3
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 2.9e-31 138.7 95 78.9
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 2.9e-31 138.7 95 78.9
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 2.9e-31 138.7 97 75.3
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 5.0e-31 137.9 97 76.3
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 5.0e-31 137.9 97 77.3
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 5.0e-31 137.9 97 77.3
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 6.5e-31 137.5 97 77.3
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 6.5e-31 137.5 95 77.9
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 8.5e-31 137.1 97 75.3
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 8.5e-31 137.1 97 76.3
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 8.5e-31 137.1 95 78.9
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 8.5e-31 137.1 97 76.3
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 8.5e-31 137.1 97 76.3
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 1.1e-30 136.7 97 76.3
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 1.5e-30 136.3 97 75.3
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 1.9e-30 136.0 112 70.5
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 1.9e-30 136.0 97 75.3
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 2.5e-30 135.6 116 67.2
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 3.2e-30 135.2 95 75.8
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 3.2e-30 135.2 97 75.3
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 4.2e-30 134.8 97 76.3
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 4.2e-30 134.8 97 76.3
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 4.2e-30 134.8 97 76.3
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 4.2e-30 134.8 97 75.3
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 5.5e-30 134.4 97 74.2
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 7.2e-30 134.0 112 69.6
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 7.2e-30 134.0 95 75.8
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 9.4e-30 133.7 97 74.2
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 9.4e-30 133.7 97 73.2
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 1.6e-29 132.9 97 73.2
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 2.1e-29 132.5 97 74.2
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 2.1e-29 132.5 97 74.2
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 2.7e-29 132.1 95 74.7
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 2.7e-29 132.1 97 73.2
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 3.6e-29 131.7 116 66.4
Haze_06373 Corylus avellana HOM05D004313 ORTHO05D005036 4.7e-29 131.3 97 73.2
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 1.0e-28 130.2 97 75.3
A09p07780 Brassica napus HOM05D004313 ORTHO05D005036 1.0e-28 130.2 97 75.3
C09p08680 Brassica napus HOM05D004313 ORTHO05D005036 1.0e-28 130.2 97 75.3
BraA09t36426Z Brassica rapa HOM05D004313 ORTHO05D005036 1.0e-28 130.2 97 75.3
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 1.0e-28 130.2 97 72.2
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 1.0e-28 130.2 97 72.2
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 1.4e-28 129.8 116 64.7
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 1.8e-28 129.4 97 74.2
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 1.8e-28 129.4 97 75.3
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 1.8e-28 129.4 97 75.3
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 1.8e-28 129.4 97 72.2
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 2.3e-28 129.0 97 73.2
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 2.3e-28 129.0 97 72.2
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 2.3e-28 129.0 116 64.7
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 2.3e-28 129.0 97 74.2
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 3.9e-28 128.3 97 74.2
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 5.2e-28 127.9 97 74.2
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 5.2e-28 127.9 97 74.2
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 5.2e-28 127.9 97 72.2
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 1.5e-27 126.3 97 73.2
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 2.0e-27 125.9 97 73.2
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 2.0e-27 125.9 97 74.2
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 2.6e-27 125.6 97 73.2
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 2.6e-27 125.6 95 70.5
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 2.6e-27 125.6 120 62.5
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 3.3e-27 125.2 116 63.8
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 3.3e-27 125.2 97 72.2
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 5.7e-27 124.4 97 72.2
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 7.4e-27 124.0 97 72.2
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 9.7e-27 123.6 97 66.0
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 9.7e-27 123.6 97 66.0
MBI18_g11289_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 3.7e-26 121.7 96 69.8
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 4.8e-26 121.3 95 71.6
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 2.4e-25 119.0 97 66.0
MBI18_g11290_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 2.4e-25 119.0 95 69.5
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 4.1e-25 118.2 135 53.3
SEGI_36637 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 5.9e-24 114.4 98 58.2
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 1.7e-23 112.8 97 63.9
CDE05G2166 Ceratophyllum demersum HOM05D004313 ORTHO05D005036 3.8e-23 111.7 95 63.2
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 1.1e-22 110.2 98 60.2
arahy.Tifrunner.gnm1.ann1.225J64 Arachis hypogaea HOM05D004313 ORTHO05D005036 2.5e-22 109.0 97 64.9
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 2.3e-20 102.4 95 61.1
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 5.2e-20 101.3 197 39.1
HPP92_025605 Vanilla planifolia HOM05D004313 ORTHO05D005036 7.5e-19 97.4 95 57.9
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 9.7e-19 97.1 95 56.8
Zm00001eb221820 Zea mays HOM05D004313 ORTHO05D005036 1.7e-18 96.3 95 56.8
Cpa.g.sc2206.1 Carica papaya HOM05D004313 ORTHO05D005036 2.2e-18 95.9 64 78.1
unitig_744.g24392 Utricularia gibba HOM05D004313 ORTHO05D005036 2.8e-18 95.5 97 56.7
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 1.4e-17 93.2 97 57.7
Mapoly0187s0007 Marchantia polymorpha HOM05D004313 ORTHO05D005036 7.2e-14 80.9 95 44.2
SMO144G0109 Selaginella moellendorffii HOM05D004313 ORTHO05D005036 9.4e-14 80.5 98 48.0
Pp3c11_11570 Physcomitrium patens HOM05D004313 ORTHO05D005036 2.7e-13 79.0 97 42.3
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 3.0e-12 75.5 48 83.3
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 5.2e-12 74.7 50 76.0
CBR_g24406 Chara braunii HOM05D004313 ORTHO05D005036 3.4e-11 72.0 98 41.8
arahy.Tifrunner.gnm1.ann1.S2RLRJ Arachis hypogaea HOM05D004313 ORTHO05D005036 4.5e-08 61.6 48 70.8
Cre02.g097250 Chlamydomonas reinhardtii HOM05D004313 ORTHO05D005036 1.3e-07 60.1 118 38.1


User provided reference genes

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