Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038248 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D033897 1.2e-74 283.1 144 100.0
CSS0009054 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D033897 1.8e-70 269.2 144 95.8
CSS0018471 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006344 1.0e-62 243.4 132 95.5
vmacro01067 Vaccinium macrocarpon HOM05D000070 ORTHO05D006344 2.8e-47 192.2 132 76.5
vmacro14060 Vaccinium macrocarpon HOM05D000070 ORTHO05D006344 1.8e-46 189.5 132 75.8
CSS0028505 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D000722 8.6e-41 170.6 109 81.7
Lj6C778T15 Lonicera japonica HOM05D000070 ORTHO05D006344 1.1e-38 163.7 131 64.9
Nitab4.5_0007061g0080 Nicotiana tabacum HOM05D000070 ORTHO05D006344 3.4e-37 158.7 132 63.6
QL03p074004 Quercus lobata HOM05D000070 ORTHO05D006344 1.3e-36 156.8 135 62.2
QL03p074454 Quercus lobata HOM05D000070 ORTHO05D006344 1.3e-36 156.8 135 62.2
Peaxi162Scf00175g00320 Petunia axillaris HOM05D000070 ORTHO05D006344 2.2e-36 156.0 132 62.9
Nitab4.5_0000231g0160 Nicotiana tabacum HOM05D000070 ORTHO05D006344 2.9e-36 155.6 132 62.9
Thecc.02G329400 Theobroma cacao HOM05D000070 ORTHO05D006344 4.9e-36 154.8 133 62.4
Cc03_g11280 Coffea canephora HOM05D000070 ORTHO05D033897 2.4e-35 152.5 131 60.3
CAN.G707.5 Capsicum annuum HOM05D000070 ORTHO05D006344 5.4e-35 151.4 135 62.2
Cc03_g11290 Coffea canephora HOM05D000070 ORTHO05D006344 9.2e-35 150.6 131 59.5
QL03p074523 Quercus lobata HOM05D000070 ORTHO05D006344 9.2e-35 150.6 132 61.4
TAR371G0409 Trochodendron aralioides HOM05D000070 ORTHO05D006344 1.2e-34 150.2 133 58.6
COL.COLO4_27870 Corchorus olitorius HOM05D000070 ORTHO05D006344 7.8e-34 147.5 133 60.2
PGSC0003DMG400028368 Solanum tuberosum HOM05D000070 ORTHO05D006344 7.8e-34 147.5 133 61.7
Atru.chr11.1617 Acer truncatum HOM05D000070 ORTHO05D006344 2.3e-33 146.0 135 61.5
MSTRG.13451 Avicennia marina HOM05D000070 ORTHO05D006344 5.1e-33 144.8 132 59.8
Ciclev10031132m.g Citrus clementina HOM05D000070 ORTHO05D006344 6.6e-33 144.4 133 59.4
Rhsim02G0237900 Rhododendron simsii HOM05D000070 ORTHO05D006344 6.6e-33 144.4 90 82.2
Solyc05g012190.3 Solanum lycopersicum HOM05D000070 ORTHO05D006344 6.6e-33 144.4 133 61.7
Rhsim02G0238200 Rhododendron simsii HOM05D000070 ORTHO05D006344 8.6e-33 144.1 90 81.1
DCAR_030045 Daucus carota HOM05D000070 ORTHO05D006344 1.1e-32 143.7 133 57.9
QL03p073969 Quercus lobata HOM05D000070 ORTHO05D006344 2.5e-32 142.5 134 58.2
Potri.001G128700 Populus trichocarpa HOM05D000070 ORTHO05D006344 3.3e-32 142.1 131 61.1
Sopen05g007020 Solanum pennellii HOM05D000070 ORTHO05D006344 3.3e-32 142.1 133 60.9
Duzib251G0829 Durio zibethinus HOM05D000070 ORTHO05D006344 5.6e-32 141.4 139 57.6
GSVIVG01034378001 Vitis vinifera HOM05D000070 ORTHO05D000722 5.6e-32 141.4 118 67.8
Manes.04G050400 Manihot esculenta HOM05D000070 ORTHO05D006344 7.3e-32 141.0 131 57.3
Nn4g23451 Nelumbo nucifera HOM05D000070 ORTHO05D006344 1.2e-31 140.2 133 55.6
QL03p073983 Quercus lobata HOM05D000070 ORTHO05D006344 2.1e-31 139.4 135 56.3
CiPaw.06G092600 Carya illinoinensis HOM05D000070 ORTHO05D006344 2.8e-31 139.0 135 56.3
MELO3C012157.2 Cucumis melo HOM05D000070 ORTHO05D006344 1.1e-30 137.1 133 55.6
Sabra01G0099000 Salix brachista HOM05D000070 ORTHO05D006344 1.1e-30 137.1 129 59.7
CANSAT11G2528 Cannabis sativa HOM05D000070 ORTHO05D006344 1.8e-30 136.3 137 56.9
Cc11_g11890 Coffea canephora HOM05D000070 ORTHO05D006344 4.0e-30 135.2 110 63.6
Gorai.001G006200 Gossypium raimondii HOM05D000070 ORTHO05D006344 1.2e-29 133.7 139 54.7
CsaV3_5G033370 Cucumis sativus L. HOM05D000070 ORTHO05D006344 1.5e-29 133.3 133 54.1
Gohir.D07G006600 Gossypium hirsutum HOM05D000070 ORTHO05D006344 1.5e-29 133.3 139 54.0
Gohir.A07G005400 Gossypium hirsutum HOM05D000070 ORTHO05D006344 4.4e-29 131.7 139 53.2
Glyma.02G118800 Glycine max HOM05D000070 ORTHO05D006344 4.9e-28 128.3 139 52.5
ClCG05G023650 Citrullus lanatus HOM05D000070 ORTHO05D006344 8.4e-28 127.5 133 53.4
Phvul.003G041700 Phaseolus vulgaris HOM05D000070 ORTHO05D006344 8.4e-28 127.5 136 53.7
Migut.J01072 Erythranthe guttata HOM05D000070 ORTHO05D006344 2.4e-27 125.9 121 57.0
Aqoxy2G01115 Aquilegia oxysepala HOM05D000070 ORTHO05D006344 3.2e-27 125.6 137 56.2
Ah.03g138860 Amaranthus hybridus HOM05D000070 ORTHO05D006344 4.1e-27 125.2 137 54.7
Aqoxy1G00608 Aquilegia oxysepala HOM05D000070 ORTHO05D006344 4.1e-27 125.2 132 57.6
TWI31G0249 Tripterygium wilfordii HOM05D000070 ORTHO05D006344 4.1e-27 125.2 117 59.0
TWI31G0934 Tripterygium wilfordii HOM05D000070 ORTHO05D006344 4.1e-27 125.2 117 59.0
Cpa.g.sc1.136 Carica papaya HOM05D000070 ORTHO05D006344 7.1e-27 124.4 133 52.6
SalBow2G1167 Salvia bowleyana HOM05D000113 ORTHO05D006344 1.2e-26 123.6 125 52.0
Hund05835 Selenicereus undatus HOM05D000070 ORTHO05D006344 1.6e-26 123.2 118 58.5
Sed0010273 Sechium edule HOM05D000070 ORTHO05D006344 6.0e-26 121.3 133 51.9
EL10Ac6g15010 Beta vulgaris HOM05D000070 ORTHO05D006344 7.8e-26 120.9 133 51.9
Haze_11898 Corylus avellana HOM05D000070 ORTHO05D006344 7.8e-26 120.9 106 61.3
arahy.Tifrunner.gnm1.ann1.9AW2B2 Arachis hypogaea HOM05D000070 ORTHO05D006344 1.3e-25 120.2 128 53.9
Lj1g0014852 Lotus japonicus HOM05D000070 ORTHO05D006344 1.3e-25 120.2 130 53.1
AUR62003090 Chenopodium quinoa HOM05D000070 ORTHO05D006344 1.7e-25 119.8 128 50.8
Lsat_1_v5_gn_4_11741 Lactuca sativa HOM05D000070 ORTHO05D006344 1.7e-25 119.8 129 52.7
TAR365G1030 Trochodendron aralioides HOM05D000070 ORTHO05D006344 2.3e-25 119.4 90 66.7
Actinidia33245 Actinidia chinensis HOM05D002141 ORTHO05D002119 5.1e-25 118.2 69 87.0
Thhalv10003859m.g Eutrema salsugineum HOM05D000070 ORTHO05D006344 8.7e-25 117.5 124 52.4
AUR62007907 Chenopodium quinoa HOM05D000070 ORTHO05D006344 1.1e-24 117.1 130 50.8
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 1.5e-24 116.7 133 49.6
arahy.Tifrunner.gnm1.ann1.Z90ZKN Arachis hypogaea HOM05D000070 ORTHO05D006344 1.5e-24 116.7 128 53.1
TAR371G0020 Trochodendron aralioides HOM05D000070 ORTHO05D006344 1.5e-24 116.7 83 71.1
ECA234G0905 Erigeron canadensis HOM05D000070 ORTHO05D006344 1.9e-24 116.3 103 62.1
Cc00_g25790 Coffea canephora HOM05D000070 ORTHO05D006344 3.3e-24 115.5 70 80.0
Carub.0005s0280 Capsella rubella HOM05D000070 ORTHO05D006344 4.3e-24 115.2 122 53.3
Cfa008871 Carpinus fangiana HOM05D000070 ORTHO05D006344 5.6e-24 114.8 105 60.0
Lalb_Chr17g0341241 Lupinus albus HOM05D000070 ORTHO05D006344 9.6e-24 114.0 133 52.6
Sp2g14350 Schrenkiella parvula HOM05D000070 ORTHO05D006344 2.8e-23 112.5 122 53.3
Ca_08367_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006344 4.7e-23 111.7 79 69.6
THA.LOC104801824 Tarenaya hassleriana HOM05D000070 ORTHO05D006344 4.7e-23 111.7 133 49.6
PSO017G7094 Papaver somniferum HOM05D000070 ORTHO05D006344 6.2e-23 111.3 112 54.5
PSO478G0742 Papaver somniferum HOM05D000070 ORTHO05D006344 6.2e-23 111.3 113 54.0
PSO478G2435 Papaver somniferum HOM05D000070 ORTHO05D006344 6.2e-23 111.3 113 54.0
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 1.1e-22 110.5 122 50.8
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 1.1e-22 110.5 122 50.8
BolC9t56003H Brassica oleracea HOM05D000070 ORTHO05D006344 1.1e-22 110.5 122 50.8
VMungo1215G2913 Vigna mungo HOM05D000070 ORTHO05D006344 1.1e-22 110.5 126 50.0
Prupe.1G288400 Prunus persica HOM05D000070 ORTHO05D006344 1.8e-22 109.8 69 78.3
A09p24520 Brassica napus HOM05D000070 ORTHO05D006344 3.1e-22 109.0 131 48.1
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 4.0e-22 108.6 132 50.0
AL5G13450 Arabidopsis lyrata HOM05D000070 ORTHO05D006344 5.2e-22 108.2 122 52.5
AT2G03670 Arabidopsis thaliana HOM05D000070 ORTHO05D006344 5.2e-22 108.2 122 51.6
PGR119G0539 Punica granatum HOM05D000070 ORTHO05D006344 6.9e-22 107.8 138 46.4
MD16G1060100 Malus domestica HOM05D000070 ORTHO05D006344 9.0e-22 107.5 69 76.8
SGA_v2.0_scaffold257G45707 Striga asiatica HOM05D000070 ORTHO05D006344 1.5e-21 106.7 117 53.0
HanXRQChr17g0568381 Helianthus annuus HOM05D000070 ORTHO05D006344 2.6e-21 105.9 113 54.0
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 1.7e-20 103.2 133 48.9
CARHR146000 Cardamine hirsuta HOM05D000070 ORTHO05D006344 1.7e-20 103.2 122 50.0
FvH4_4g29870 Fragaria vesca HOM05D000070 ORTHO05D006344 2.9e-20 102.4 69 72.5
FAN07G2606 Fragaria x ananassa HOM05D000070 ORTHO05D006344 2.9e-20 102.4 69 72.5
FAN12G0985 Fragaria x ananassa HOM05D000070 ORTHO05D006344 2.9e-20 102.4 69 72.5
FAN17G0562 Fragaria x ananassa HOM05D000070 ORTHO05D006344 2.9e-20 102.4 69 72.5
FAN22G1193 Fragaria x ananassa HOM05D000070 ORTHO05D006344 6.4e-20 101.3 69 72.5
RcHm_v2.0_Chr4g0438121 Rosa chinensis HOM05D000070 ORTHO05D006344 1.4e-19 100.1 69 72.5
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 1.9e-19 99.8 71 70.4
Psat3g081320 Pisum sativum HOM05D000070 ORTHO05D006344 1.9e-19 99.8 76 63.2
Medtr7g088980 Medicago truncatula HOM05D000070 ORTHO05D006344 2.4e-19 99.4 74 66.2
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 2.7e-18 95.9 71 67.6
MBI19_g41556_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D006344 3.5e-18 95.5 74 60.8
ATR0177G056 Amborella trichopoda HOM05D000070 ORTHO05D006344 4.6e-18 95.1 69 66.7
CSS0034873 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D000722 6.0e-18 94.7 53 88.7
TPR.G22677 Trifolium pratense HOM05D000070 ORTHO05D006344 1.3e-17 93.6 73 63.0
Eucgr.G02441 Eucalyptus grandis HOM05D000070 ORTHO05D006344 2.3e-17 92.8 71 64.8
Rhsim02G0238000 Rhododendron simsii HOM05D000070 ORTHO05D006344 6.6e-17 91.3 49 87.8
SEGI_05577 Sequoiadendron giganteum HOM05D000070 ORTHO05D006344 3.6e-15 85.5 69 60.9
Zm00001eb425850 Zea mays HOM05D000070 ORTHO05D006344 8.1e-15 84.3 71 59.2
CDE05G0678 Ceratophyllum demersum HOM05D000070 ORTHO05D006344 1.4e-14 83.6 97 44.3
SMO147G0197 Selaginella moellendorffii HOM05D000070 ORTHO05D006344 1.4e-14 83.6 76 59.2
HPP92_006114 Vanilla planifolia HOM05D000070 ORTHO05D006344 3.1e-14 82.4 71 57.7
Medtr7g088850 Medicago truncatula HOM05D000070 ORTHO05D006344 1.5e-13 80.1 69 58.0
Os04g0498800 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D006344 9.9e-13 77.4 74 55.4
CSS0040639 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D110186 1.3e-12 77.0 41 95.1
CSS0047747 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D110790 1.3e-12 77.0 41 95.1
CSS0018364 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D113106 1.1e-11 73.9 41 92.7
CBR_g54905 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-11 73.2 70 50.0
Mapoly0149s0015 Marchantia polymorpha HOM05D000070 ORTHO05D006344 7.1e-11 71.2 73 52.1
Pp3c21_20700 Physcomitrium patens HOM05D000070 ORTHO05D006344 8.7e-09 64.3 72 44.4
PRCOL_00005146 Prasinoderma coloniale HOM05D000070 ORTHO05D006344 2.5e-08 62.8 74 43.2
Actinidia28631 Actinidia chinensis HOM05D000070 ORTHO05D006344 7.4e-08 61.2 74 51.4
AagrBONN_evm.TU.Sc2ySwM_362.1946 Anthoceros agrestis HOM05D000070 ORTHO05D006344 1.6e-07 60.1 71 43.7
Cre17.g700300 Chlamydomonas reinhardtii HOM05D000070 ORTHO05D006344 2.8e-07 59.3 74 41.9


User provided reference genes

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