Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038246 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 6.8e-70 267.3 145 100.0
Cc02_g31810 Coffea canephora HOM05D004749 ORTHO05D005995 9.6e-40 167.2 154 63.0
Actinidia13350 Actinidia chinensis HOM05D004749 ORTHO05D005995 6.2e-39 164.5 151 65.6
CSS0022958 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 1.8e-38 162.9 141 70.9
Nn4g25537 Nelumbo nucifera HOM05D004749 ORTHO05D005995 3.1e-38 162.2 156 62.8
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 2.9e-36 155.6 147 67.3
TAR633G2406 Trochodendron aralioides HOM05D004749 ORTHO05D005995 2.4e-35 152.5 157 64.3
Hma1.2p1_1168F.1_g263150 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 3.2e-35 152.1 125 71.2
Hma1.2p1_4126F.1_g338340 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 3.2e-35 152.1 125 71.2
Nn3g21759 Nelumbo nucifera HOM05D004749 ORTHO05D005995 4.2e-35 151.8 156 60.9
QL06p012791 Quercus lobata HOM05D004749 ORTHO05D005995 7.1e-35 151.0 147 63.9
MSTRG.12116 Avicennia marina HOM05D004749 ORTHO05D005995 1.2e-34 150.2 143 62.9
Hma1.2p1_1400F.1_g280890 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 1.2e-34 150.2 145 64.8
CAN.G532.7 Capsicum annuum HOM05D004749 ORTHO05D005995 3.5e-34 148.7 153 60.8
PSO210G7457 Papaver somniferum HOM05D004749 ORTHO05D005995 1.3e-33 146.7 156 55.8
FvH4_4g12660 Fragaria vesca HOM05D004749 ORTHO05D005995 3.9e-33 145.2 139 62.6
FAN07G1280 Fragaria x ananassa HOM05D004749 ORTHO05D005995 3.9e-33 145.2 149 61.1
Peaxi162Scf00074g02033 Petunia axillaris HOM05D004749 ORTHO05D005995 3.9e-33 145.2 155 59.4
Lalb_Chr07g0181981 Lupinus albus HOM05D004749 ORTHO05D005995 6.7e-33 144.4 157 58.0
Nitab4.5_0001220g0090 Nicotiana tabacum HOM05D004749 ORTHO05D005995 8.7e-33 144.1 126 68.3
RcHm_v2.0_Chr4g0411531 Rosa chinensis HOM05D004749 ORTHO05D005995 1.1e-32 143.7 133 63.9
Sopen08g029650 Solanum pennellii HOM05D004749 ORTHO05D005995 1.5e-32 143.3 125 67.2
PGSC0003DMG400012333 Solanum tuberosum HOM05D004749 ORTHO05D005995 1.5e-32 143.3 125 67.2
Cfa014134 Carpinus fangiana HOM05D004749 ORTHO05D005995 1.9e-32 142.9 149 59.1
Haze_22859 Corylus avellana HOM05D004749 ORTHO05D005995 1.9e-32 142.9 157 57.3
Nitab4.5_0006920g0020 Nicotiana tabacum HOM05D004749 ORTHO05D005995 2.5e-32 142.5 126 67.5
Hma1.2p1_0078F.1_g039880 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 3.3e-32 142.1 149 63.1
MD14G1004700 Malus domestica HOM05D004749 ORTHO05D005995 3.3e-32 142.1 152 57.9
QL04p048178 Quercus lobata HOM05D004749 ORTHO05D005995 4.3e-32 141.7 128 65.6
Solyc08g081330.4 Solanum lycopersicum HOM05D004749 ORTHO05D005995 4.3e-32 141.7 125 66.4
Migut.A01124 Erythranthe guttata HOM05D004749 ORTHO05D005995 5.6e-32 141.4 128 65.6
CsaV3_2G009980 Cucumis sativus L. HOM05D004749 ORTHO05D005995 9.6e-32 140.6 161 55.3
FAN12G1239 Fragaria x ananassa HOM05D004749 ORTHO05D005995 9.6e-32 140.6 127 65.4
GSVIVG01034965001 Vitis vinifera HOM05D004749 ORTHO05D005995 1.3e-31 140.2 123 66.7
TAR362G1144 Trochodendron aralioides HOM05D004749 ORTHO05D005995 2.1e-31 139.4 125 68.0
Duzib151G0494 Durio zibethinus HOM05D004749 ORTHO05D005995 2.8e-31 139.0 158 57.6
Eucgr.K01628 Eucalyptus grandis HOM05D004749 ORTHO05D005995 2.8e-31 139.0 153 57.5
Glyma.07G237800 Glycine max HOM05D004749 ORTHO05D005995 2.8e-31 139.0 158 58.2
FAN22G0862 Fragaria x ananassa HOM05D004749 ORTHO05D005995 3.7e-31 138.7 146 59.6
Oeu061088.1 Olea europaea HOM05D004749 ORTHO05D005995 3.7e-31 138.7 122 66.4
CSS0044945 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 6.2e-31 137.9 135 65.9
Sc17g0002650 Simmondsia chinensis HOM05D004749 ORTHO05D005995 6.2e-31 137.9 125 63.2
Ciclev10005025m.g Citrus clementina HOM05D004749 ORTHO05D005995 8.1e-31 137.5 146 58.9
FAN17G3131 Fragaria x ananassa HOM05D004749 ORTHO05D005995 8.1e-31 137.5 141 61.0
Manes.09G084300 Manihot esculenta HOM05D004749 ORTHO05D005995 1.1e-30 137.1 125 64.0
Potri.010G148000 Populus trichocarpa HOM05D004749 ORTHO05D005995 1.1e-30 137.1 152 57.2
ClCG11G010380 Citrullus lanatus HOM05D004749 ORTHO05D005995 1.4e-30 136.7 153 56.9
MELO3C008635.2 Cucumis melo HOM05D004749 ORTHO05D005995 1.4e-30 136.7 158 55.7
Manes.08G074300 Manihot esculenta HOM05D004749 ORTHO05D005995 3.1e-30 135.6 153 54.9
MBI19_g03265_MAGBIO Magnolia biondii HOM05D004749 ORTHO05D005995 4.0e-30 135.2 122 67.2
PSO210G5482 Papaver somniferum HOM05D004749 ORTHO05D005995 4.0e-30 135.2 147 55.1
CANSAT11G0071 Cannabis sativa HOM05D004749 ORTHO05D005995 5.3e-30 134.8 133 63.2
Duzib052G0525 Durio zibethinus HOM05D004749 ORTHO05D005995 5.3e-30 134.8 142 59.2
Gohir.A09G223200 Gossypium hirsutum HOM05D004749 ORTHO05D005995 6.9e-30 134.4 141 58.9
Lj6A693T62 Lonicera japonica HOM05D004749 ORTHO05D005995 6.9e-30 134.4 146 56.8
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 6.9e-30 134.4 137 61.3
TWI73G0343 Tripterygium wilfordii HOM05D004749 ORTHO05D005995 9.0e-30 134.0 153 56.9
Glyma.17G035700 Glycine max HOM05D004749 ORTHO05D005995 2.6e-29 132.5 157 56.7
Sabra10G0114100 Salix brachista HOM05D004749 ORTHO05D005995 2.6e-29 132.5 152 55.3
Thecc.04G246100 Theobroma cacao HOM05D004749 ORTHO05D005995 2.6e-29 132.5 129 61.2
CiPaw.02G073100 Carya illinoinensis HOM05D004749 ORTHO05D005995 3.4e-29 132.1 123 65.0
MD12G1007400 Malus domestica HOM05D004749 ORTHO05D005995 3.4e-29 132.1 129 60.5
HPP92_008928 Vanilla planifolia HOM05D004749 ORTHO05D005995 3.4e-29 132.1 160 52.5
ECA246G2874 Erigeron canadensis HOM05D004749 ORTHO05D005995 5.8e-29 131.3 125 64.0
Phvul.003G116600 Phaseolus vulgaris HOM05D004749 ORTHO05D005995 5.8e-29 131.3 127 63.0
THA.LOC104827101 Tarenaya hassleriana HOM05D004749 ORTHO05D005995 5.8e-29 131.3 155 55.5
CiPaw.01G136300 Carya illinoinensis HOM05D004749 ORTHO05D005995 7.6e-29 131.0 128 60.2
MD16G1150500 Malus domestica HOM05D004749 ORTHO05D005995 7.6e-29 131.0 130 60.0
SalBow1G5780 Salvia bowleyana HOM05D004749 ORTHO05D005995 7.6e-29 131.0 114 66.7
Sp7g19970 Schrenkiella parvula HOM05D004749 ORTHO05D005995 9.9e-29 130.6 134 59.0
Hund18596 Selenicereus undatus HOM05D004749 ORTHO05D005995 1.3e-28 130.2 135 59.3
Aqoxy1G00958 Aquilegia oxysepala HOM05D004749 ORTHO05D005995 1.7e-28 129.8 154 57.1
AT4G21800 Arabidopsis thaliana HOM05D004749 ORTHO05D005995 2.9e-28 129.0 128 58.6
Gohir.D09G225200 Gossypium hirsutum HOM05D004749 ORTHO05D005995 3.8e-28 128.6 133 58.6
Gorai.006G246700 Gossypium raimondii HOM05D004749 ORTHO05D005995 3.8e-28 128.6 133 58.6
Lsat_1_v5_gn_9_58140 Lactuca sativa HOM05D004749 ORTHO05D005995 3.8e-28 128.6 112 67.0
EL10Ac7g16373 Beta vulgaris HOM05D004749 ORTHO05D005995 4.9e-28 128.3 127 58.3
Carub.0007s1960 Capsella rubella HOM05D004749 ORTHO05D005995 4.9e-28 128.3 128 57.8
AL7G32130 Arabidopsis lyrata HOM05D004749 ORTHO05D005995 6.4e-28 127.9 128 57.8
PGR031G3778 Punica granatum HOM05D004749 ORTHO05D005995 6.4e-28 127.9 128 62.5
Atru.chr4.3050 Acer truncatum HOM05D004749 ORTHO05D005995 8.4e-28 127.5 162 52.5
CDE02G1224 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 8.4e-28 127.5 129 58.9
HanXRQChr17g0569351 Helianthus annuus HOM05D004749 ORTHO05D005995 1.1e-27 127.1 123 61.0
unitig_578.g15957 Utricularia gibba HOM05D004749 ORTHO05D005995 1.1e-27 127.1 126 60.3
arahy.Tifrunner.gnm1.ann1.YK8CX2 Arachis hypogaea HOM05D004749 ORTHO05D005995 1.4e-27 126.7 160 51.9
Rhsim10G0104300 Rhododendron simsii HOM05D004749 ORTHO05D005995 2.4e-27 125.9 113 68.1
Prupe.1G114400 Prunus persica HOM05D004749 ORTHO05D005995 3.2e-27 125.6 124 60.5
Cpa.g.sc106.97 Carica papaya HOM05D004749 ORTHO05D005995 4.2e-27 125.2 112 66.1
VMungo0720G2504 Vigna mungo HOM05D004749 ORTHO05D005995 4.2e-27 125.2 115 61.7
arahy.Tifrunner.gnm1.ann1.CI16ME Arachis hypogaea HOM05D004749 ORTHO05D005995 5.5e-27 124.8 124 58.9
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 5.5e-27 124.8 119 62.2
Thhalv10025484m.g Eutrema salsugineum HOM05D004749 ORTHO05D005995 5.5e-27 124.8 128 57.8
Sed0018873 Sechium edule HOM05D004749 ORTHO05D005995 7.1e-27 124.4 128 59.4
HanXRQChr10g0314441 Helianthus annuus HOM05D004749 ORTHO05D005995 9.3e-27 124.0 115 64.3
DCAR_026992 Daucus carota HOM05D004749 ORTHO05D005995 1.2e-26 123.6 126 60.3
CARHR228550 Cardamine hirsuta HOM05D004749 ORTHO05D005995 1.6e-26 123.2 125 57.6
Sabra08G0077900 Salix brachista HOM05D004749 ORTHO05D005995 2.7e-26 122.5 126 61.1
COL.COLO4_15791 Corchorus olitorius HOM05D004749 ORTHO05D005995 1.3e-25 120.2 124 57.3
Potri.008G103000 Populus trichocarpa HOM05D004749 ORTHO05D005995 1.3e-25 120.2 150 57.3
Actinidia14251 Actinidia chinensis HOM05D004749 ORTHO05D005995 3.0e-25 119.0 82 78.0
Lju912A2T64 Lonicera japonica HOM05D004749 ORTHO05D005995 3.0e-25 119.0 128 58.6
vmacro12071 Vaccinium macrocarpon HOM05D004749 ORTHO05D005995 3.0e-25 119.0 84 75.0
BolC1t01536H Brassica oleracea HOM05D004749 ORTHO05D005995 3.9e-25 118.6 133 51.9
Medtr1g100240 Medicago truncatula HOM05D004749 ORTHO05D005995 3.9e-25 118.6 115 60.9
vmacro15173 Vaccinium macrocarpon HOM05D004749 ORTHO05D005995 3.9e-25 118.6 132 56.1
Psat6g193640 Pisum sativum HOM05D004749 ORTHO05D005995 1.1e-24 117.1 152 50.7
Haze_01330 Corylus avellana HOM05D004749 ORTHO05D005995 1.5e-24 116.7 161 51.6
A01p13130 Brassica napus HOM05D004749 ORTHO05D005995 1.9e-24 116.3 133 50.4
BraA01t01257Z Brassica rapa HOM05D004749 ORTHO05D005995 1.9e-24 116.3 133 50.4
BcaC09g51199 Brassica carinata HOM05D004749 ORTHO05D005995 2.5e-24 115.9 133 51.1
C01p15820 Brassica napus HOM05D004749 ORTHO05D005995 2.5e-24 115.9 133 51.1
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 2.5e-24 115.9 114 59.6
Zm00001eb395880 Zea mays HOM05D004749 ORTHO05D005995 2.5e-24 115.9 137 54.0
Dinv15143 Davidia involucrata HOM05D004749 ORTHO05D005995 3.3e-24 115.5 66 89.4
Lj4g0011402 Lotus japonicus HOM05D004749 ORTHO05D005995 5.6e-24 114.8 114 59.6
BcaNung02248 Brassica carinata HOM05D004749 ORTHO05D005995 3.7e-23 112.1 122 54.1
ATR0693G032 Amborella trichopoda HOM05D004749 ORTHO05D005995 1.1e-22 110.5 128 53.9
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 1.1e-22 110.5 116 58.6
BcaC01g00741 Brassica carinata HOM05D004749 ORTHO05D005995 2.4e-22 109.4 155 45.2
SalBow7G1269 Salvia bowleyana HOM05D004749 ORTHO05D005995 2.4e-22 109.4 66 83.3
AUR62028146 Chenopodium quinoa HOM05D004749 ORTHO05D005995 6.9e-22 107.8 109 56.9
AUR62041770 Chenopodium quinoa HOM05D004749 ORTHO05D005995 6.9e-22 107.8 109 56.9
AUR62005917 Chenopodium quinoa HOM05D004749 ORTHO05D005995 2.0e-21 106.3 130 50.0
A08p15460 Brassica napus HOM05D004749 ORTHO05D005995 7.6e-21 104.4 119 54.6
Lj6C561G5 Lonicera japonica HOM05D004749 ORTHO05D005995 2.2e-20 102.8 66 78.8
HanXRQChr08g0212681 Helianthus annuus HOM05D004749 ORTHO05D005995 9.3e-19 97.4 66 77.3
DCAR_030456 Daucus carota HOM05D004749 ORTHO05D005995 1.6e-18 96.7 151 45.0
SEGI_28650 Sequoiadendron giganteum HOM05D004749 ORTHO05D005995 7.9e-18 94.4 155 43.2
Aa31LG6G3810 Aethionema arabicum HOM05D004749 ORTHO05D005995 3.9e-17 92.0 66 68.2
Psat1g194120 Pisum sativum HOM05D002906 ORTHO05D003211 5.1e-17 91.7 110 47.3
MD13G1150100 Malus domestica HOM05D004749 ORTHO05D005995 6.7e-17 91.3 114 52.6
AagrBONN_evm.TU.Sc2ySwM_368.1659 Anthoceros agrestis HOM05D004749 ORTHO05D005995 8.7e-17 90.9 134 48.5
BraA08t33522Z Brassica rapa HOM05D004749 ORTHO05D005995 4.8e-15 85.1 92 57.6
CBR_g44475 Chara braunii HOM05D004749 ORTHO05D005995 6.3e-15 84.7 64 64.1
Mapoly0080s0030 Marchantia polymorpha HOM05D004749 ORTHO05D005995 1.1e-14 84.0 149 39.6
Pp3c8_16870 Physcomitrium patens HOM05D004749 ORTHO05D005995 2.4e-14 82.8 108 43.5
Psat7g201920 Pisum sativum HOM05D000835 ORTHO05D004825 1.2e-13 80.5 77 58.4
PRCOL_00000431 Prasinoderma coloniale HOM05D004749 ORTHO05D005995 3.4e-13 79.0 109 42.2
SMO271G0158 Selaginella moellendorffii HOM05D004749 ORTHO05D005995 3.4e-13 79.0 83 51.8
CARHR228600 Cardamine hirsuta HOM05D004749 ORTHO05D043482 2.2e-12 76.3 53 73.6
TAR374G0424 Trochodendron aralioides HOM05D000090 ORTHO05D001322 5.5e-11 71.6 54 64.8
C03p83720 Brassica napus HOM05D004749 ORTHO05D005995 7.2e-11 71.2 96 44.8
BolC3t20652H Brassica oleracea HOM05D004749 ORTHO05D005995 7.2e-11 71.2 96 44.8
Haze_27364 Corylus avellana HOM05D004749 ORTHO05D005995 2.3e-09 66.2 63 52.4
Cre06.g267150 Chlamydomonas reinhardtii HOM05D004749 ORTHO05D005995 3.0e-09 65.9 102 37.3
Hma1.2p1_0013F.1_g008320 Hydrangea macrophylla HOM05D004749 ORTHO05D043482 2.0e-08 63.2 42 81.0
MCO13G184 Micromonas commoda HOM05D004749 ORTHO05D005995 1.7e-07 60.1 130 38.5
HPP92_008940 Vanilla planifolia HOM05D004749 ORTHO05D005995 9.1e-06 54.3 34 76.5


User provided reference genes

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