Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038245 Camellia sinensis var. sinensis HOM05D025271 ORTHO05D000285 6.2e-213 743.8 360 100.0
CSS0037918 Camellia sinensis var. sinensis HOM05D025271 ORTHO05D000285 9.0e-188 660.2 378 87.8
CSS0020821 Camellia sinensis var. sinensis HOM05D025271 ORTHO05D000285 3.4e-94 349.4 292 62.3
CSS0002535 Camellia sinensis var. sinensis HOM05D025271 ORTHO05D000285 6.8e-87 325.1 311 55.3
CSS0049064 Camellia sinensis var. sinensis HOM05D025271 ORTHO05D000285 6.2e-80 302.0 345 52.8
CSS0038692 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.1e-50 202.6 314 40.4
CSS0047854 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 8.7e-50 201.8 276 43.1
CSS0003904 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 1.1e-47 194.9 340 37.6
CSS0012224 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 9.7e-41 171.8 403 33.7
CSS0049565 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 3.7e-40 169.9 315 39.0
CSS0015688 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 1.4e-39 167.9 385 33.5
CSS0013810 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.0e-37 159.5 309 36.2
CSS0014704 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.5e-28 129.4 156 46.2
CSS0024057 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.5e-28 129.4 156 46.2
CSS0016021 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 1.2e-27 128.3 314 35.4
CSS0015075 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 4.7e-27 126.3 156 45.5
CSS0044588 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 4.7e-27 126.3 187 42.8
CSS0039848 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 5.1e-26 122.9 198 40.4
CSS0013298 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 5.0e-21 106.3 161 36.6
CSS0039704 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 1.5e-20 104.8 227 29.5
Actinidia04386 Actinidia chinensis HOM05D000876 ORTHO05D000285 3.2e-20 103.6 142 36.6
Actinidia07377 Actinidia chinensis HOM05D000876 ORTHO05D000285 3.2e-20 103.6 142 36.6
Actinidia15148 Actinidia chinensis HOM05D000876 ORTHO05D000285 3.2e-20 103.6 142 36.6
CSS0014901 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 7.2e-20 102.4 150 38.0
CSS0029673 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 9.4e-20 102.1 147 36.7
CSS0005143 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 2.1e-19 100.9 147 38.1
CSS0005680 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.1e-19 99.4 156 39.1
Actinidia36308 Actinidia chinensis HOM05D000876 ORTHO05D000285 2.3e-18 97.4 142 35.2
CSS0028966 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 4.0e-18 96.7 132 38.6
CSS0018277 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 6.7e-18 95.9 104 43.3
CSS0031319 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 6.7e-18 95.9 143 35.7
CSS0036694 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 3.3e-17 93.6 136 36.8
CSS0027195 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 6.3e-16 89.4 104 41.3
CSS0041660 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 1.1e-15 88.6 152 31.6
CSS0021579 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 7.0e-15 85.9 214 29.0
Medtr3g110155 Medicago truncatula HOM05D000876 ORTHO05D000285 7.0e-15 85.9 164 32.3
Medtr8g006585 Medicago truncatula HOM05D000876 ORTHO05D000285 7.0e-15 85.9 164 32.3
Medtr8g006695 Medicago truncatula HOM05D000876 ORTHO05D000285 7.0e-15 85.9 164 32.3
Rhsim06G0093500 Rhododendron simsii HOM05D000876 ORTHO05D000285 7.0e-15 85.9 218 29.8
CSS0044094 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 1.6e-14 84.7 111 37.8
Rhsim10G0146900 Rhododendron simsii HOM05D000876 ORTHO05D000285 2.0e-14 84.3 218 29.4
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 2.7e-14 84.0 214 28.0
Rhsim05G0157800 Rhododendron simsii HOM05D000876 ORTHO05D000285 2.7e-14 84.0 218 28.9
Rhsim06G0024000 Rhododendron simsii HOM05D000876 ORTHO05D000285 7.7e-14 82.4 218 28.9
Rhsim01G0089100 Rhododendron simsii HOM05D000034 ORTHO05D000285 2.2e-13 80.9 141 34.8
Rhsim03G0048400 Rhododendron simsii HOM05D000034 ORTHO05D000037 2.2e-13 80.9 141 34.8
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 3.8e-13 80.1 140 35.0
TAR555G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 3.8e-13 80.1 150 32.0
Medtr2g435870 Medicago truncatula HOM05D000876 ORTHO05D000285 5.0e-13 79.7 156 32.1
Rhsim02G0037900 Rhododendron simsii HOM05D000034 ORTHO05D000285 5.0e-13 79.7 141 34.8
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 8.5e-13 79.0 140 33.6
CSS0050094 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 1.1e-12 78.6 137 38.0
Gorai.004G036600 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.9e-12 77.8 150 34.7
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 1.9e-12 77.8 198 30.8
Glyma.04G129400 Glycine max HOM05D000876 ORTHO05D000285 3.2e-12 77.0 142 35.2
MD12G1140100 Malus domestica HOM05D002354 ORTHO05D002469 3.2e-12 77.0 101 41.6
TWI38G1581 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.2e-12 76.6 103 37.9
Atru.chr12.1553 Acer truncatum HOM05D000876 ORTHO05D000285 5.5e-12 76.3 100 37.0
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 5.5e-12 76.3 140 32.1
AUR62009858 Chenopodium quinoa HOM05D000034 ORTHO05D000037 5.5e-12 76.3 107 33.6
Glyma.15G226650 Glycine max HOM05D000876 ORTHO05D000285 5.5e-12 76.3 142 35.2
Rhsim09G0055100 Rhododendron simsii HOM05D000034 ORTHO05D000037 5.5e-12 76.3 141 33.3
TWI23G0996 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 5.5e-12 76.3 215 28.8
TWI34G1578 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 5.5e-12 76.3 215 28.8
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 7.2e-12 75.9 140 32.9
AUR62033764 Chenopodium quinoa HOM05D000876 ORTHO05D000285 9.4e-12 75.5 107 34.6
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 9.4e-12 75.5 142 34.5
Rhsim04G0145400 Rhododendron simsii HOM05D000034 ORTHO05D000285 1.6e-11 74.7 141 32.6
Rhsim09G0200000 Rhododendron simsii HOM05D000034 ORTHO05D000037 1.6e-11 74.7 141 32.6
RhsimUnG0152200 Rhododendron simsii HOM05D000034 ORTHO05D000037 1.6e-11 74.7 141 32.6
TWI75G1494 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.6e-11 74.7 215 28.4
Glyma.06G250600 Glycine max HOM05D000876 ORTHO05D000285 2.1e-11 74.3 142 34.5
Gorai.006G093000 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.7e-11 73.9 142 33.8
Rhsim09G0041300 Rhododendron simsii HOM05D000876 ORTHO05D000285 2.7e-11 73.9 191 30.4
TWI12G1481 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 2.7e-11 73.9 102 35.3
Sc03g0004530 Simmondsia chinensis HOM05D000876 ORTHO05D000285 3.6e-11 73.6 98 35.7
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 4.7e-11 73.2 101 34.7
Rhsim10G0163900 Rhododendron simsii HOM05D000034 ORTHO05D000285 4.7e-11 73.2 141 31.9
TPR.G25769 Trifolium pratense HOM05D000876 ORTHO05D000285 4.7e-11 73.2 106 35.8
TWI34G1784 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.7e-11 73.2 101 35.6
TWI38G0708 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.7e-11 73.2 101 35.6
TWI38G1661 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.7e-11 73.2 101 35.6
TWI63G0199 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.7e-11 73.2 109 35.8
CANSAT64G0872 Cannabis sativa HOM05D000876 ORTHO05D000285 8.0e-11 72.4 101 34.7
Glyma.05G069200 Glycine max HOM05D000876 ORTHO05D000285 8.0e-11 72.4 142 34.5
Rhsim08G0093200 Rhododendron simsii HOM05D000034 ORTHO05D000037 8.0e-11 72.4 102 37.3
Atru.chr10.1597 Acer truncatum HOM05D000876 ORTHO05D000285 1.0e-10 72.0 100 35.0
Medtr1g080080 Medicago truncatula HOM05D000876 ORTHO05D000285 1.4e-10 71.6 159 30.8
Medtr2g018710 Medicago truncatula HOM05D000876 ORTHO05D000285 1.4e-10 71.6 159 30.8
Medtr2g086350 Medicago truncatula HOM05D000876 ORTHO05D000285 1.4e-10 71.6 159 30.8
Hund30880 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.4e-10 71.6 150 27.3
Hund23719 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.8e-10 71.2 150 27.3
CSS0042709 Camellia sinensis var. sinensis HOM05D012179 ORTHO05D109585 3.0e-10 70.5 68 50.0
CsaV3_5G004940 Cucumis sativus L. HOM05D000876 ORTHO05D000285 3.0e-10 70.5 113 35.4
arahy.Tifrunner.gnm1.ann1.2911W9 Arachis hypogaea HOM05D000876 ORTHO05D000285 4.0e-10 70.1 146 30.8
TWI36G1398 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.0e-10 70.1 101 35.6
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 5.2e-10 69.7 142 32.4
TWI31G1090 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 5.2e-10 69.7 103 33.0
Hma1.2p1_0228F.1_g096560 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 6.8e-10 69.3 101 34.7
TWI75G0526 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 6.8e-10 69.3 101 35.6
TWI81G0918 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 6.8e-10 69.3 101 35.6
Hund14971 Selenicereus undatus HOM05D000876 ORTHO05D000285 8.8e-10 68.9 140 27.9
arahy.Tifrunner.gnm1.ann1.X5RLQI Arachis hypogaea HOM05D000034 ORTHO05D000285 1.2e-09 68.6 146 30.1
Potri.010G019001 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.2e-09 68.6 138 31.2
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 1.5e-09 68.2 140 30.0
Peaxi162Scf00593g00324 Petunia axillaris HOM05D007579 ORTHO05D000285 1.5e-09 68.2 98 31.6
TPR.G22361 Trifolium pratense HOM05D000876 ORTHO05D000285 1.5e-09 68.2 119 35.3
TWI75G0795 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.5e-09 68.2 101 35.6
Hma1.2p1_2073F.1_g313200 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 2.0e-09 67.8 101 33.7
TWI60G1225 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 3.4e-09 67.0 108 32.4
CiPaw.04G117800 Carya illinoinensis HOM05D000876 ORTHO05D000285 4.4e-09 66.6 144 28.5
Rhsim11G0045400 Rhododendron simsii HOM05D019962 ORTHO05D000285 4.4e-09 66.6 194 28.9
arahy.Tifrunner.gnm1.ann1.1GV9MA Arachis hypogaea HOM05D000451 ORTHO05D000351 5.7e-09 66.2 153 28.8
arahy.Tifrunner.gnm1.ann1.PEG6DJ Arachis hypogaea HOM05D000034 ORTHO05D000037 5.7e-09 66.2 146 29.5
arahy.Tifrunner.gnm1.ann1.9S6AA1 Arachis hypogaea HOM05D000451 ORTHO05D000351 7.5e-09 65.9 153 28.8
Rhsim06G0077800 Rhododendron simsii HOM05D000876 ORTHO05D000285 1.3e-08 65.1 106 37.7
RcHm_v2.0_Chr7g0199281 Rosa chinensis HOM05D000876 ORTHO05D000285 1.3e-08 65.1 105 34.3
Nitab4.5_0000072g0060 Nicotiana tabacum HOM05D000876 ORTHO05D000285 1.7e-08 64.7 102 33.3
Potri.005G163200 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.7e-08 64.7 141 31.2
AUR62020810 Chenopodium quinoa HOM05D000034 ORTHO05D000037 2.2e-08 64.3 96 34.4
vmacro19158 Vaccinium macrocarpon HOM05D000034 ORTHO05D000285 8.3e-08 62.4 102 36.3
arahy.Tifrunner.gnm1.ann1.8YPI5A Arachis hypogaea HOM05D000034 ORTHO05D000037 1.1e-07 62.0 144 28.5
Hma1.2p1_1035F.1_g250490 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 1.1e-07 62.0 101 32.7
vmacro09328 Vaccinium macrocarpon HOM05D000034 ORTHO05D000285 1.1e-07 62.0 102 37.3
arahy.Tifrunner.gnm1.ann1.GG5U8X Arachis hypogaea HOM05D000876 ORTHO05D000285 1.4e-07 61.6 179 25.7
arahy.Tifrunner.gnm1.ann1.Z5ZQ3Q Arachis hypogaea HOM05D000034 ORTHO05D000037 1.4e-07 61.6 144 28.5
Rhsim03G0139500 Rhododendron simsii HOM05D000876 ORTHO05D000285 1.8e-07 61.2 211 27.5
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 1.8e-07 61.2 137 27.0
arahy.Tifrunner.gnm1.ann1.6409NJ Arachis hypogaea HOM05D000876 ORTHO05D000285 2.4e-07 60.8 155 28.4
arahy.Tifrunner.gnm1.ann1.KMV29V Arachis hypogaea HOM05D000876 ORTHO05D000285 2.4e-07 60.8 155 28.4
Glyma.18G030600 Glycine max HOM05D000665 ORTHO05D000285 2.4e-07 60.8 102 36.3
Os04g0243400 Oryza sativa ssp. japonica HOM05D000876 ORTHO05D000285 2.4e-07 60.8 124 31.5
CAN.G462.3 Capsicum annuum HOM05D000876 ORTHO05D000285 3.1e-07 60.5 166 28.9
Lj6g0025621 Lotus japonicus HOM05D000876 ORTHO05D000285 3.1e-07 60.5 140 27.9
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 4.1e-07 60.1 98 32.7
arahy.Tifrunner.gnm1.ann1.7Y6611 Arachis hypogaea HOM05D000034 ORTHO05D000037 5.4e-07 59.7 134 29.1
vmacro21342 Vaccinium macrocarpon HOM05D000034 ORTHO05D000037 5.4e-07 59.7 102 34.3
Psat0s2829g0240 Pisum sativum HOM05D011477 ORTHO05D000285 7.0e-07 59.3 100 37.0
CiPaw.08G099200 Carya illinoinensis HOM05D000876 ORTHO05D000285 9.1e-07 58.9 132 31.1
Psat5g127400 Pisum sativum HOM05D000665 ORTHO05D000285 9.1e-07 58.9 99 35.4
TWI53G2118 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 9.1e-07 58.9 92 32.6
Glyma.18G191100 Glycine max HOM05D000876 ORTHO05D000285 1.2e-06 58.5 120 32.5
Lalb_Chr19g0128571 Lupinus albus HOM05D000876 ORTHO05D000285 2.0e-06 57.8 105 30.5
Psat0s3845g0040 Pisum sativum HOM05D011477 ORTHO05D000285 2.7e-06 57.4 116 35.3
CSS0010034 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 3.5e-06 57.0 122 32.0
Solyc10g049530.3 Solanum lycopersicum HOM05D000034 ORTHO05D000037 3.5e-06 57.0 98 31.6
CSS0048670 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 4.5e-06 56.6 118 30.5


User provided reference genes

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