Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 3.7e-199 698.0 340 100.0
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 2.0e-165 585.9 341 84.2
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 1.7e-164 582.8 345 83.2
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 8.5e-164 580.5 346 82.1
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 1.2e-162 576.6 350 80.3
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 7.5e-160 567.4 340 80.6
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 1.6e-154 549.7 344 79.7
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 1.7e-151 539.7 352 76.7
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 2.4e-150 535.8 350 77.1
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 4.1e-150 535.0 352 75.9
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 4.1e-150 535.0 350 75.4
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 7.7e-149 530.8 352 74.4
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 2.3e-148 529.3 353 74.2
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 3.3e-147 525.4 358 73.7
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 4.2e-147 525.0 370 71.4
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 5.5e-147 524.6 350 73.4
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 5.5e-147 524.6 350 73.4
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 2.8e-146 522.3 350 73.1
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 4.7e-146 521.5 342 74.9
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.8e-145 519.6 319 78.7
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 6.8e-145 517.7 351 73.2
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 1.2e-144 516.9 353 73.1
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 2.0e-144 516.2 356 72.2
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 3.4e-144 515.4 356 71.9
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 5.7e-144 514.6 355 72.4
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 5.7e-144 514.6 355 72.4
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 5.7e-144 514.6 362 71.0
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 5.7e-144 514.6 337 75.1
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 9.8e-144 513.8 337 73.6
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 1.7e-143 513.1 361 73.1
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 2.2e-143 512.7 341 75.7
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 4.9e-143 511.5 360 71.7
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 1.1e-142 510.4 352 72.4
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 1.1e-142 510.4 351 71.2
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 3.2e-142 508.8 350 74.3
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 4.1e-142 508.4 356 73.3
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 7.0e-142 507.7 345 72.2
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 7.0e-142 507.7 347 74.1
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 9.2e-142 507.3 344 73.0
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 1.2e-141 506.9 342 74.0
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 1.6e-141 506.5 352 71.6
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 1.6e-141 506.5 362 71.3
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 3.5e-141 505.4 350 70.9
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 3.5e-141 505.4 354 72.0
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 4.5e-141 505.0 350 70.6
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 1.7e-140 503.1 354 71.8
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 2.3e-140 502.7 350 70.9
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 2.9e-140 502.3 363 70.5
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 3.9e-140 501.9 361 69.8
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 2.5e-139 499.2 365 71.0
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 2.5e-139 499.2 365 71.0
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 2.5e-139 499.2 353 71.4
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 4.3e-139 498.4 360 68.3
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 5.6e-139 498.0 375 68.8
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 5.6e-139 498.0 375 68.8
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 1.6e-138 496.5 368 70.7
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 1.6e-138 496.5 366 70.8
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 2.8e-138 495.7 358 69.6
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 6.1e-138 494.6 358 69.0
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 1.0e-137 493.8 362 69.1
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 5.2e-137 491.5 362 68.8
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 5.2e-137 491.5 357 70.6
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 6.8e-137 491.1 369 68.0
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 6.8e-137 491.1 348 69.8
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 1.2e-136 490.3 364 69.2
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 1.5e-136 490.0 352 68.2
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 1.5e-136 490.0 360 67.5
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 2.0e-136 489.6 364 67.6
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 3.4e-136 488.8 365 70.4
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 4.4e-136 488.4 361 68.7
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 7.5e-136 487.6 362 68.0
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 1.3e-135 486.9 362 68.0
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 2.9e-135 485.7 356 66.6
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 4.9e-135 485.0 362 68.0
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 4.9e-135 485.0 362 68.8
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 1.1e-134 483.8 358 69.3
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 1.9e-134 483.0 364 67.0
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 2.4e-134 482.6 356 67.7
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 5.4e-134 481.5 354 70.9
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 7.0e-134 481.1 364 66.8
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 1.6e-133 479.9 364 66.8
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 1.6e-133 479.9 364 66.8
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 2.0e-133 479.6 353 68.3
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 2.3e-132 476.1 349 69.3
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 3.9e-132 475.3 350 69.7
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 6.6e-132 474.6 351 71.2
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 4.3e-131 471.9 432 60.0
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 1.2e-130 470.3 345 69.3
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 3.6e-130 468.8 350 68.0
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 2.3e-129 466.1 321 72.0
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.7e-127 459.9 347 66.9
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 4.9e-127 458.4 351 66.4
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.9e-126 456.4 347 66.6
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 5.4e-126 454.9 353 65.4
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 6.0e-125 451.4 320 74.1
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 1.3e-124 450.3 341 67.2
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 1.9e-123 446.4 329 70.8
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 9.5e-123 444.1 365 62.7
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 9.5e-123 444.1 329 70.2
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 8.1e-122 441.0 360 63.6
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 5.2e-121 438.3 363 63.1
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 6.8e-121 438.0 345 63.2
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 1.3e-119 433.7 326 68.7
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 4.6e-117 425.2 349 62.2
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 1.5e-112 410.2 341 60.1
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 7.6e-112 407.9 360 56.7
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 9.9e-112 407.5 281 73.3
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 1.0e-108 397.5 349 58.2
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 5.1e-108 395.2 318 61.6
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 4.8e-106 388.7 310 62.9
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 1.2e-104 384.0 289 70.9
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 5.8e-104 381.7 287 69.3
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 7.9e-101 371.3 194 88.7
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 1.9e-99 366.7 353 56.7
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 7.3e-99 364.8 319 59.2
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.3e-98 364.0 342 53.8
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 1.6e-98 363.6 194 87.6
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 6.2e-98 361.7 229 76.9
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 6.2e-98 361.7 340 56.5
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 1.1e-97 360.9 194 86.6
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 4.0e-97 359.0 301 58.5
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 1.1e-94 350.9 291 60.1
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 1.4e-94 350.5 307 56.0
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 2.7e-93 346.3 349 53.0
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 2.8e-90 336.3 300 54.0
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 1.4e-68 264.2 153 80.4
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 1.1e-67 261.2 206 65.0
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.9e-62 243.8 126 87.3
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 2.6e-59 233.4 199 60.3
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 8.8e-52 208.4 175 63.4
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 8.5e-47 191.8 333 39.0
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 9.4e-46 188.3 100 84.0
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 9.1e-41 171.8 148 58.1
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 1.4e-36 157.9 147 59.2
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 2.4e-33 147.1 102 75.5
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 2.8e-29 133.7 141 54.6
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 4.0e-28 129.8 73 78.1
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 5.2e-28 129.4 88 70.5
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 1.5e-27 127.9 73 76.7
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 3.4e-27 126.7 236 40.7
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 6.0e-16 89.4 115 42.6
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 5.2e-12 76.3 40 85.0
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 3.7e-10 70.1 76 56.6


User provided reference genes

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