Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 0.0e+00 1172.5 568 100.0
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 0.0e+00 1100.1 568 91.9
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 0.0e+00 1098.6 568 91.9
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 0.0e+00 1079.3 568 90.8
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 0.0e+00 1077.8 568 90.3
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 0.0e+00 1076.2 568 90.3
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 3.9e-312 1074.3 568 89.6
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 3.9e-312 1073.5 564 89.7
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 7.8e-312 1073.2 568 89.4
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 7.8e-312 1072.8 568 89.4
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.2e-311 1072.4 568 90.8
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 3.8e-310 1067.4 568 90.0
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 6.5e-310 1066.6 571 90.0
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.5e-309 1065.4 568 89.1
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.5e-309 1064.7 561 90.7
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.2e-309 1064.3 563 90.6
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.6e-308 1062.0 561 90.0
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 6.1e-308 1060.1 567 89.9
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 8.0e-308 1059.7 556 90.6
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.0e-307 1059.3 567 88.5
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.4e-307 1058.9 568 89.1
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 3.0e-307 1057.7 568 89.8
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 3.0e-307 1057.7 567 89.9
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 4.0e-307 1057.4 568 89.1
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 6.8e-307 1056.6 563 89.5
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 2.0e-306 1055.0 565 89.0
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.6e-306 1054.7 556 89.7
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 3.4e-306 1054.3 568 88.9
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 9.8e-306 1052.7 567 88.5
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 9.8e-306 1052.7 561 89.5
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 2.8e-305 1051.2 568 88.4
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.8e-305 1051.2 563 88.8
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 4.9e-305 1050.4 568 88.7
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 6.3e-305 1050.0 568 88.6
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 1.4e-304 1048.9 563 88.5
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 3.1e-304 1047.7 568 88.7
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 4.1e-304 1047.3 568 88.0
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.6e-303 1045.4 567 87.7
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 1.6e-303 1045.4 568 88.2
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 561 88.6
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 568 87.9
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 5.0e-302 1040.4 568 86.8
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 8.6e-302 1039.6 561 87.7
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 8.6e-302 1039.6 568 87.7
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 1.1e-301 1039.3 567 87.7
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.1e-301 1039.3 568 86.3
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 1.2e-300 1035.8 568 86.6
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 1.2e-300 1035.8 568 86.6
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.2e-300 1035.8 568 86.8
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 563 87.6
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 6.8e-299 1030.0 568 86.1
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 8.9e-299 1029.6 565 86.2
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.2e-298 1029.2 563 87.2
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 2.0e-298 1028.5 568 87.0
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 568 85.4
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 563 86.9
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 3.7e-297 1024.2 569 85.8
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.4e-297 1023.5 563 86.7
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 3.2e-296 1021.1 561 85.7
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 4.1e-296 1020.8 568 86.8
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 2.7e-295 1018.1 566 86.6
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 7.8e-295 1016.5 563 85.8
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 7.8e-295 1016.5 563 85.8
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 1.5e-293 1012.3 565 84.6
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 4.3e-293 1010.7 561 86.1
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 5.6e-293 1010.4 550 87.5
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 7.3e-293 1010.0 556 86.9
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.2e-292 1009.2 563 86.1
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.8e-292 1008.1 565 83.7
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.1e-291 1004.6 565 83.2
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 6.8e-291 1003.4 571 84.4
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 8.9e-291 1003.0 552 85.9
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.2e-290 1002.7 565 85.3
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 5.8e-290 1000.3 561 84.5
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 7.5e-290 1000.0 558 86.4
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 1.7e-289 998.8 564 85.3
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.2e-289 998.4 563 85.1
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 8.3e-289 996.5 565 85.0
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.1e-288 996.1 568 84.5
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.4e-288 995.7 562 85.4
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 2.4e-288 995.0 551 85.8
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 8.6e-286 986.5 550 86.4
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 3.3e-285 984.6 570 83.9
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.3e-285 983.4 568 84.0
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 1.6e-284 982.2 565 83.5
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.8e-284 981.5 549 85.8
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.1e-283 979.5 534 86.7
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.4e-283 979.2 567 83.6
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.2e-283 977.2 549 85.4
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 4.4e-282 974.2 562 84.5
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.7e-281 972.2 564 83.0
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 3.7e-281 971.1 564 81.6
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.4e-280 968.4 564 81.0
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 9.2e-280 966.5 564 81.9
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 2.1e-279 965.3 562 83.6
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-278 962.6 564 82.1
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.7e-278 962.2 564 81.9
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.7e-278 962.2 564 81.9
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 3.0e-278 961.4 564 81.9
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 3.0e-278 961.4 564 81.9
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 3.0e-278 961.4 564 81.9
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 3.9e-278 961.1 564 81.9
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 6.6e-278 960.3 564 81.7
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 6.6e-278 960.3 564 81.7
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 6.6e-278 960.3 564 81.7
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 8.6e-278 959.9 564 81.4
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 2.5e-277 958.4 564 81.6
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 3.3e-277 958.0 564 82.1
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 3.3e-277 958.0 564 82.1
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 5.6e-277 957.2 564 82.4
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 5.6e-277 957.2 568 80.3
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 1.6e-276 955.7 564 81.0
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 4.7e-276 954.1 564 81.9
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 6.2e-276 953.7 564 81.0
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.1e-275 953.0 564 81.4
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 5.8e-274 947.2 564 80.1
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 9.9e-274 946.4 564 80.7
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.4e-273 943.3 564 79.3
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.5e-271 937.9 564 79.3
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 6.6e-270 933.7 563 82.2
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 2.5e-269 931.8 568 77.8
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.9e-264 915.6 565 77.0
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 3.2e-264 914.8 571 76.4
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 2.1e-263 912.1 570 76.8
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.3e-262 909.4 571 75.5
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 2.1e-260 902.1 568 75.5
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.1e-259 899.8 564 78.4
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.8e-259 899.0 574 74.9
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 5.8e-258 894.0 524 82.3
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 9.9e-258 893.3 565 74.3
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 2.2e-257 892.1 567 74.6
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.4e-251 872.1 565 74.2
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 3.1e-251 871.7 551 76.0
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 1.7e-249 865.9 556 77.5
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 9.3e-248 860.1 569 73.8
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 5.1e-246 854.4 568 73.8
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.8e-241 838.2 566 71.4
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.8e-238 829.3 469 82.5
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.3e-236 823.2 564 70.7
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 1.7e-225 786.2 424 89.2
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.5e-213 746.5 563 67.1
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 7.7e-210 734.2 567 65.8
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.5e-208 728.0 425 82.1
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.1e-187 659.1 373 83.1
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.7e-177 626.7 541 55.8
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.6e-175 619.0 417 74.6
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.8e-167 592.8 329 82.7
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 4.4e-165 585.5 523 54.1
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.4e-163 580.5 488 55.7
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 2.8e-159 566.2 292 88.0
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 2.0e-149 533.5 418 60.5
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.6e-141 506.5 567 50.3
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.2e-139 499.6 568 49.8
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 4.6e-130 469.2 304 73.7
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.3e-128 462.6 468 55.1
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 9.1e-86 322.0 549 39.3
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 8.0e-82 308.9 210 73.8
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.4e-81 308.1 492 37.0
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.4e-65 255.0 197 66.0
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 1.5e-64 251.5 197 65.0
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.6e-58 231.5 166 67.5
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 8.6e-52 209.1 132 78.0
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.4e-49 201.8 133 76.7
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 9.9e-48 195.7 128 77.3
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 1.0e-44 185.7 122 70.5
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 1.5e-43 181.8 166 60.2
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 5.6e-43 179.9 166 60.2
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 9.6e-43 179.1 166 60.2
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-41 175.6 166 59.6
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 3.0e-36 157.5 322 33.2
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 4.2e-30 137.1 87 71.3
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.3e-28 132.1 95 64.2
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 9.6e-27 125.9 494 26.7
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-26 125.6 213 38.0
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.3e-26 125.6 76 72.4
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 2.8e-26 124.4 85 65.9
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 2.1e-21 108.2 184 39.1
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 3.0e-20 104.4 166 41.6
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 4.8e-18 97.1 103 51.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 4.1e-09 67.4 46 58.7
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 1.1e-06 59.3 72 54.2


User provided reference genes

Program Settings