Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 5.1e-193 677.6 341 100.0
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 4.2e-171 604.7 344 87.8
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 8.0e-162 573.9 345 82.9
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 9.8e-160 567.0 316 89.6
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 9.2e-158 560.5 353 82.7
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 1.2e-157 560.1 322 85.1
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 2.0e-157 559.3 353 82.7
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.7e-156 556.2 322 84.8
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 1.7e-156 556.2 340 81.8
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.1e-155 553.5 343 81.6
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 2.5e-155 552.4 337 82.2
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 2.5e-155 552.4 324 85.5
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 3.3e-155 552.0 324 83.3
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 4.3e-155 551.6 324 83.6
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 7.3e-155 550.8 338 82.2
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.6e-154 549.7 341 81.5
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 2.1e-154 549.3 336 82.1
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 2.1e-154 549.3 322 84.2
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 2.8e-154 548.9 356 77.5
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.8e-154 548.9 339 81.1
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.6e-154 548.5 345 79.7
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.6e-154 548.5 336 82.1
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.6e-154 548.5 347 80.4
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 8.0e-154 547.4 344 80.5
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.4e-153 546.6 333 82.0
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.8e-153 546.2 357 76.8
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 2.3e-153 545.8 350 79.1
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 2.3e-153 545.8 344 80.8
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 3.0e-153 545.4 351 78.6
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 6.8e-153 544.3 351 82.1
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 4.4e-152 541.6 327 81.7
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 5.7e-152 541.2 342 79.5
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 7.5e-152 540.8 318 84.0
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 7.5e-152 540.8 301 87.7
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.3e-151 540.0 324 82.7
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.2e-151 539.3 345 79.1
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 2.2e-151 539.3 336 80.4
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 2.9e-151 538.9 347 80.1
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 3.7e-151 538.5 325 82.5
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.7e-151 538.5 355 78.0
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.7e-151 538.5 355 78.0
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 4.9e-151 538.1 342 79.8
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 8.3e-151 537.3 345 78.8
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 2.4e-150 535.8 351 78.3
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 3.2e-150 535.4 330 81.8
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 4.1e-150 535.0 308 85.4
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 5.4e-150 534.6 348 76.4
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 5.4e-150 534.6 355 77.7
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 9.2e-150 533.9 402 69.7
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.2e-149 533.5 340 78.2
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.7e-149 532.3 354 77.4
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 4.6e-149 531.6 326 81.3
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 7.8e-149 530.8 327 81.0
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.3e-148 530.0 336 79.8
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.7e-148 529.6 348 76.4
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 2.3e-148 529.3 327 80.4
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 3.0e-148 528.9 324 81.5
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 3.9e-148 528.5 326 80.7
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 5.0e-148 528.1 329 80.2
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 6.6e-148 527.7 328 80.5
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 6.6e-148 527.7 292 87.7
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 8.6e-148 527.3 328 80.5
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.1e-147 526.9 327 80.1
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 1.1e-147 526.9 325 80.3
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 3.3e-147 525.4 327 80.1
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 4.3e-147 525.0 327 80.4
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.2e-146 523.5 360 76.9
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 1.2e-146 523.5 341 77.7
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 2.8e-146 522.3 337 78.3
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.0e-145 520.4 296 85.8
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 1.8e-145 519.6 291 87.6
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 4.0e-145 518.5 349 78.8
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 5.2e-145 518.1 351 79.2
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 5.2e-145 518.1 324 78.7
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 8.9e-145 517.3 323 79.9
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 8.9e-145 517.3 296 84.1
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 1.2e-144 516.9 325 79.7
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 2.6e-144 515.8 324 79.6
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 3.4e-144 515.4 324 79.3
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 3.4e-144 515.4 324 79.3
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 9.8e-144 513.8 350 74.6
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 9.8e-144 513.8 325 79.4
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 1.3e-143 513.5 337 80.4
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 2.4e-142 509.2 318 80.2
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 2.4e-142 509.2 296 85.1
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 2.4e-142 509.2 339 76.4
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 3.2e-142 508.8 388 67.8
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 4.1e-142 508.4 342 76.6
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 2.0e-141 506.1 335 77.0
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 2.3e-140 502.7 337 73.3
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 3.0e-140 502.3 341 74.5
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.2e-138 496.9 284 83.8
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 2.8e-138 495.7 292 82.5
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 2.3e-137 492.7 324 76.9
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 5.2e-137 491.5 341 74.8
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 6.8e-137 491.1 268 89.2
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 1.5e-136 490.0 310 79.7
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 2.0e-136 489.6 315 80.0
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 2.0e-136 489.6 325 75.1
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 5.8e-136 488.0 288 80.6
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 6.4e-135 484.6 324 75.0
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 6.4e-135 484.6 343 69.7
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.6e-133 479.9 334 73.7
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 1.3e-132 476.9 334 76.3
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 3.9e-132 475.3 272 84.9
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 4.3e-131 471.9 321 78.2
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 8.9e-129 464.2 270 83.3
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 3.4e-128 462.2 297 80.1
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 3.5e-125 452.2 302 75.8
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 3.6e-122 442.2 286 73.1
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 3.8e-119 432.2 315 64.1
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.2e-117 427.2 255 83.9
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 1.6e-117 426.8 287 73.5
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 4.3e-115 418.7 286 75.2
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 9.0e-113 411.0 272 71.7
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 2.0e-112 409.8 303 72.6
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.2e-111 406.4 256 79.7
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 1.5e-107 393.7 268 76.5
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.4e-105 386.3 310 63.5
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 1.5e-96 357.1 228 78.9
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.0e-92 344.4 216 80.6
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.4e-89 334.0 229 77.3
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.3e-79 300.8 341 53.1
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 9.1e-65 251.5 153 77.8
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.0e-63 248.1 139 84.9
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.8e-60 237.3 139 84.9
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.7e-58 230.7 142 84.5
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.2e-58 230.3 181 66.3
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 8.5e-55 218.4 132 77.3
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.0e-52 211.5 109 87.2
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 3.0e-52 209.9 108 86.1
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 3.8e-39 166.4 282 42.6
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 1.9e-38 164.1 112 69.6
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 9.5e-38 161.8 129 59.7
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 2.2e-34 150.6 117 63.2
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 2.4e-33 147.1 308 33.1
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 3.6e-29 133.3 165 49.7
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 1.6e-24 117.9 86 66.3
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 1.5e-22 111.3 289 31.8
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 9.5e-22 108.6 87 59.8
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 6.2e-21 105.9 71 73.2
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 2.0e-19 100.9 103 57.3
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 9.9e-19 98.6 53 79.2
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 3.7e-18 96.7 52 86.5
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 8.3e-18 95.5 91 58.2
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.1e-17 95.1 93 59.1
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 1.4e-17 94.7 53 81.1
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 7.8e-16 89.0 81 50.6
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 8.1e-13 79.0 40 85.0
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 1.7e-07 61.2 57 57.9
Cc04_g14790 Coffea canephora HOM05D004860 ORTHO05D006366 8.6e-07 58.9 29 82.8
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.5e-06 58.2 31 83.9
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 1.9e-06 57.8 50 60.0


User provided reference genes

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