Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038217 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 2.2e-64 248.8 127 100.0
CSS0025261 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 9.5e-60 233.4 120 98.3
Actinidia23070 Actinidia chinensis HOM05D007294 ORTHO05D009205 9.3e-39 163.7 113 76.1
Dinv27334 Davidia involucrata HOM05D007294 ORTHO05D009205 1.3e-37 159.8 126 69.8
Hma1.2p1_0186F.1_g081585 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 2.5e-36 155.6 126 72.2
CiPaw.06G028900 Carya illinoinensis HOM05D007294 ORTHO05D009205 3.3e-36 155.2 123 69.9
Hma1.2p1_0186F.1_g081590 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 2.1e-35 152.5 123 72.4
Rhsim06G0104800 Rhododendron simsii HOM05D007294 ORTHO05D009205 2.1e-35 152.5 118 72.0
MD08G1165800 Malus domestica HOM05D007294 ORTHO05D009205 6.2e-35 151.0 119 69.7
FAN20G0043 Fragaria x ananassa HOM05D007294 ORTHO05D009205 6.9e-34 147.5 120 68.3
FAN15G3738 Fragaria x ananassa HOM05D007294 ORTHO05D009205 1.2e-33 146.7 121 68.6
FvH4_2g26680 Fragaria vesca HOM05D007294 ORTHO05D009205 2.6e-33 145.6 120 68.3
Dinv40407 Davidia involucrata HOM05D007294 ORTHO05D009205 3.4e-33 145.2 123 69.1
FAN24G1632 Fragaria x ananassa HOM05D007294 ORTHO05D009205 3.4e-33 145.2 120 68.3
RcHm_v2.0_Chr6g0295521 Rosa chinensis HOM05D007294 ORTHO05D009205 3.4e-33 145.2 122 68.9
GSVIVG01008891001 Vitis vinifera HOM05D007294 ORTHO05D009205 3.4e-33 145.2 105 71.4
QL09p035498 Quercus lobata HOM05D007294 ORTHO05D009205 5.8e-33 144.4 112 70.5
Duzib093G0485 Durio zibethinus HOM05D007294 ORTHO05D009205 9.9e-33 143.7 119 67.2
vmacro12540 Vaccinium macrocarpon HOM05D007294 ORTHO05D009205 9.9e-33 143.7 114 72.8
CsaV3_4G028350 Cucumis sativus L. HOM05D007294 ORTHO05D009205 2.2e-32 142.5 118 65.3
MELO3C010470.2 Cucumis melo HOM05D007294 ORTHO05D009205 2.9e-32 142.1 118 65.3
TWI36G0375 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 6.4e-32 141.0 123 62.6
Aqoxy6G00180 Aquilegia oxysepala HOM05D007294 ORTHO05D009205 1.1e-31 140.2 124 63.7
Haze_00466 Corylus avellana HOM05D007294 ORTHO05D009205 1.1e-31 140.2 121 66.1
Lalb_Chr11g0065821 Lupinus albus HOM05D007294 ORTHO05D009205 1.9e-31 139.4 102 70.6
Manes.18G075800 Manihot esculenta HOM05D007294 ORTHO05D009205 1.9e-31 139.4 120 65.8
Potri.002G085200 Populus trichocarpa HOM05D007294 ORTHO05D009205 1.9e-31 139.4 120 66.7
Prupe.1G500700 Prunus persica HOM05D007294 ORTHO05D009205 2.4e-31 139.0 120 66.7
Sabra02G0066700 Salix brachista HOM05D007294 ORTHO05D009205 2.4e-31 139.0 120 65.0
Hund16850 Selenicereus undatus HOM05D007294 ORTHO05D009205 2.4e-31 139.0 90 76.7
Glyma.06G111500 Glycine max HOM05D007294 ORTHO05D009205 4.2e-31 138.3 112 67.0
TAR628G0157 Trochodendron aralioides HOM05D007294 ORTHO05D009205 7.1e-31 137.5 117 68.4
Gorai.009G244600 Gossypium raimondii HOM05D007294 ORTHO05D009205 1.2e-30 136.7 80 80.0
Lsat_1_v5_gn_6_112740 Lactuca sativa HOM05D007294 ORTHO05D009205 1.6e-30 136.3 129 62.8
COL.COLO4_12212 Corchorus olitorius HOM05D007294 ORTHO05D009205 2.1e-30 136.0 115 64.3
Gohir.A05G233900 Gossypium hirsutum HOM05D007294 ORTHO05D009205 2.7e-30 135.6 80 78.8
Atru.chr13.1423 Acer truncatum HOM05D007294 ORTHO05D009205 3.5e-30 135.2 116 62.1
AUR62004727 Chenopodium quinoa HOM05D007294 ORTHO05D009205 3.5e-30 135.2 79 83.5
AUR62023647 Chenopodium quinoa HOM05D007294 ORTHO05D009205 3.5e-30 135.2 82 80.5
Nn5g28204 Nelumbo nucifera HOM05D007294 ORTHO05D009205 3.5e-30 135.2 118 61.9
PGR042G2863 Punica granatum HOM05D007294 ORTHO05D009205 3.5e-30 135.2 125 61.6
Ciclev10002717m.g Citrus clementina HOM05D007294 ORTHO05D009205 4.6e-30 134.8 125 60.0
DCAR_014100 Daucus carota HOM05D007294 ORTHO05D009205 6.0e-30 134.4 123 62.6
Lj1g0002873 Lotus japonicus HOM05D007294 ORTHO05D009205 6.0e-30 134.4 119 62.2
Sed0003401 Sechium edule HOM05D007294 ORTHO05D009205 6.0e-30 134.4 119 63.9
Ca_15198_v3 Cicer arietinum L. HOM05D007294 ORTHO05D009205 7.9e-30 134.0 82 80.5
arahy.Tifrunner.gnm1.ann1.D4BK2C Arachis hypogaea HOM05D007294 ORTHO05D009205 1.0e-29 133.7 123 62.6
arahy.Tifrunner.gnm1.ann1.NH3KYE Arachis hypogaea HOM05D007294 ORTHO05D009205 1.0e-29 133.7 123 62.6
BraA05t20931Z Brassica rapa HOM05D007294 ORTHO05D009205 1.0e-29 133.7 112 61.6
Carub.0006s2684 Capsella rubella HOM05D007294 ORTHO05D009205 1.0e-29 133.7 83 77.1
Eucgr.F03776 Eucalyptus grandis HOM05D007294 ORTHO05D009205 1.0e-29 133.7 126 63.5
Eucgr.F03773 Eucalyptus grandis HOM05D007294 ORTHO05D009205 1.3e-29 133.3 126 63.5
HanXRQChr05g0151051 Helianthus annuus HOM05D007294 ORTHO05D009205 1.3e-29 133.3 122 60.7
Phvul.009G123500 Phaseolus vulgaris HOM05D007294 ORTHO05D009205 1.3e-29 133.3 90 72.2
Thecc.08G122800 Theobroma cacao HOM05D007294 ORTHO05D009205 2.3e-29 132.5 119 63.0
BcaC05g27437 Brassica carinata HOM05D007294 ORTHO05D009205 3.0e-29 132.1 112 61.6
Sc01g0001240 Simmondsia chinensis HOM05D007294 ORTHO05D009205 3.0e-29 132.1 107 64.5
Nitab4.5_0002798g0020 Nicotiana tabacum HOM05D007294 ORTHO05D009205 5.1e-29 131.3 78 82.1
PSO528G0176 Papaver somniferum HOM05D007294 ORTHO05D009205 5.1e-29 131.3 120 60.0
Migut.N03292 Erythranthe guttata HOM05D007294 ORTHO05D009205 6.7e-29 131.0 106 68.9
Psat0s375g0040 Pisum sativum HOM05D007294 ORTHO05D009205 6.7e-29 131.0 120 59.2
TWI12G0925 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 6.7e-29 131.0 77 79.2
AT4G08280 Arabidopsis thaliana HOM05D007294 ORTHO05D009205 8.7e-29 130.6 82 76.8
CAN.G127.6 Capsicum annuum HOM05D007294 ORTHO05D009205 1.1e-28 130.2 75 81.3
Ah.13g072640 Amaranthus hybridus HOM05D001216 ORTHO05D008355 1.5e-28 129.8 80 77.5
Medtr3g072590 Medicago truncatula HOM05D007294 ORTHO05D009205 1.5e-28 129.8 123 59.3
Sp6g09730 Schrenkiella parvula HOM05D007294 ORTHO05D009205 1.5e-28 129.8 116 62.9
Glyma.04G251200 Glycine max HOM05D007294 ORTHO05D009205 1.9e-28 129.4 114 63.2
AL6G42020 Arabidopsis lyrata HOM05D007294 ORTHO05D009205 2.5e-28 129.0 82 76.8
MSTRG.22416 Avicennia marina HOM05D007294 ORTHO05D009205 2.5e-28 129.0 82 79.3
ClCG11G015660 Citrullus lanatus HOM05D007294 ORTHO05D009205 2.5e-28 129.0 118 62.7
C05p33890 Brassica napus HOM05D007294 ORTHO05D009205 3.3e-28 128.6 112 60.7
Oeu026142.1 Olea europaea HOM05D007294 ORTHO05D009205 4.3e-28 128.3 99 66.7
BolC5t32124H Brassica oleracea HOM05D007294 ORTHO05D009205 5.6e-28 127.9 111 60.4
PGSC0003DMG400000918 Solanum tuberosum HOM05D007294 ORTHO05D009205 5.6e-28 127.9 119 59.7
BcaB05g23935 Brassica carinata HOM05D007294 ORTHO05D009205 1.3e-27 126.7 113 63.7
Nitab4.5_0001086g0040 Nicotiana tabacum HOM05D007294 ORTHO05D009205 1.3e-27 126.7 120 63.3
Solyc11g012940.2 Solanum lycopersicum HOM05D007294 ORTHO05D009205 1.3e-27 126.7 120 58.3
Sopen11g007690 Solanum pennellii HOM05D007294 ORTHO05D009205 1.3e-27 126.7 119 58.8
ECA246G4672 Erigeron canadensis HOM05D007294 ORTHO05D009205 1.6e-27 126.3 120 55.8
Thhalv10029072m.g Eutrema salsugineum HOM05D007294 ORTHO05D009205 1.6e-27 126.3 81 76.5
Aa31LG9G14290 Aethionema arabicum HOM05D007294 ORTHO05D009205 2.1e-27 125.9 118 58.5
SalBow6G4857 Salvia bowleyana HOM05D007294 ORTHO05D009205 3.7e-27 125.2 94 70.2
CANSAT25G2515 Cannabis sativa HOM05D007294 ORTHO05D009205 8.2e-27 124.0 121 61.2
ATR0693G390 Amborella trichopoda HOM05D007294 ORTHO05D009205 1.8e-26 122.9 116 58.6
Cc10_g10930 Coffea canephora HOM05D007294 ORTHO05D009205 3.1e-26 122.1 123 58.5
MBI03_g33023_MAGBIO Magnolia biondii HOM05D007294 ORTHO05D009040 1.5e-25 119.8 74 75.7
SGA_v2.0_scaffold25G11113 Striga asiatica HOM05D007294 ORTHO05D009205 1.5e-25 119.8 82 68.3
VMungo1309G1993 Vigna mungo HOM05D007294 ORTHO05D009205 1.5e-25 119.8 112 61.6
unitig_61.g26063 Utricularia gibba HOM05D007294 ORTHO05D009205 3.4e-25 118.6 89 66.3
Zm00001eb256090 Zea mays HOM05D007294 ORTHO05D009205 4.9e-24 114.8 82 65.9
Cfa015999 Carpinus fangiana HOM05D000760 ORTHO05D009205 1.1e-23 113.6 94 59.6
SMO145G0156 Selaginella moellendorffii HOM05D007294 ORTHO05D009205 2.5e-23 112.5 82 64.6
CBR_g48307 Chara braunii HOM05D007294 ORTHO05D009205 1.6e-22 109.8 73 65.8
CDE08G0173 Ceratophyllum demersum HOM05D007294 ORTHO05D009205 3.5e-22 108.6 65 76.9
Os02g0767900 Oryza sativa ssp. japonica HOM05D007294 ORTHO05D009205 5.1e-21 104.8 120 48.3
Pp3c23_9240 Physcomitrium patens HOM05D007294 ORTHO05D009205 6.7e-21 104.4 74 63.5
FAN27G2899 Fragaria x ananassa HOM05D007294 ORTHO05D009205 2.5e-20 102.4 133 51.9
AagrBONN_evm.TU.Sc2ySwM_368.1537 Anthoceros agrestis HOM05D007294 ORTHO05D009205 1.6e-19 99.8 88 55.7
CDE04G3292 Ceratophyllum demersum HOM05D007294 ORTHO05D009205 5.3e-18 94.7 110 50.0
Mapoly0007s0151 Marchantia polymorpha HOM05D007294 ORTHO05D009205 1.5e-17 93.2 84 53.6
Cpa.g.sc36.45 Carica papaya HOM05D007294 ORTHO05D009205 1.6e-14 83.2 96 57.3
Dinv40402 Davidia involucrata HOM05D007294 ORTHO05D009205 5.7e-12 74.7 79 60.8
MCO13G582 Micromonas commoda HOM05D007294 ORTHO05D009205 1.1e-10 70.5 107 38.3
Nn2g14282 Nelumbo nucifera HOM05D007294 ORTHO05D009205 1.8e-10 69.7 46 71.7
Peaxi162Scf00395g00315 Petunia axillaris HOM05D007294 ORTHO05D009205 6.5e-08 61.2 109 40.4
CARHR259360 Cardamine hirsuta HOM05D007294 ORTHO05D009205 1.4e-07 60.1 33 78.8
Cre07.g357300 Chlamydomonas reinhardtii HOM05D007294 ORTHO05D009205 2.5e-07 59.3 80 35.0


User provided reference genes

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