Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.0e-35 152.9 78 100.0
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.5e-28 127.9 86 83.7
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.5e-28 127.9 86 83.7
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 4.7e-25 117.5 82 75.6
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.4e-24 115.9 80 78.8
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.8e-24 115.5 82 74.4
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.8e-24 115.5 82 74.4
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.2e-24 114.0 83 72.3
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 6.8e-24 113.6 80 75.0
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 8.8e-24 113.2 82 70.7
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.2e-23 112.8 82 69.5
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 5.7e-23 110.5 80 71.2
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 7.5e-23 110.2 84 69.0
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.3e-22 109.4 80 71.2
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.3e-22 109.4 80 71.2
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 2.8e-22 108.2 82 65.9
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.8e-22 108.2 80 70.0
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 2.8e-22 108.2 77 75.3
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.7e-22 107.8 84 66.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 6.3e-22 107.1 79 72.2
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 8.3e-22 106.7 82 67.1
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 8.3e-22 106.7 79 73.4
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.8e-21 105.5 96 61.5
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.4e-21 105.1 86 65.1
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 2.4e-21 105.1 86 64.0
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 3.1e-21 104.8 83 67.5
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 3.1e-21 104.8 79 69.6
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 3.1e-21 104.8 77 71.4
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.1e-21 104.4 80 68.8
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 4.1e-21 104.4 84 65.5
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 5.4e-21 104.0 76 69.7
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 9.1e-21 103.2 78 70.5
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 9.1e-21 103.2 76 71.1
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.2e-20 102.8 77 70.1
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.6e-20 102.4 70 71.4
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.6e-20 102.4 82 65.9
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.6e-20 102.4 80 67.5
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.6e-20 102.4 79 69.6
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.0e-20 102.1 74 67.6
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 2.0e-20 102.1 74 67.6
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 2.0e-20 102.1 74 67.6
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 2.0e-20 102.1 80 66.2
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 2.7e-20 101.7 79 65.8
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 2.7e-20 101.7 83 61.4
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 3.5e-20 101.3 76 65.8
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 4.5e-20 100.9 81 63.0
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.9e-20 100.5 78 71.8
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 7.7e-20 100.1 79 67.1
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 7.7e-20 100.1 78 67.9
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 7.7e-20 100.1 87 60.9
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 7.7e-20 100.1 80 63.8
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.3e-19 99.4 85 63.5
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 1.3e-19 99.4 79 64.6
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 1.7e-19 99.0 80 63.8
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 2.3e-19 98.6 80 62.5
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 3.8e-19 97.8 78 64.1
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 3.8e-19 97.8 80 62.5
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 3.8e-19 97.8 82 63.4
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 5.0e-19 97.4 81 65.4
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 5.0e-19 97.4 88 59.1
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 5.0e-19 97.4 79 63.3
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 6.6e-19 97.1 93 60.2
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 8.6e-19 96.7 90 57.8
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 8.6e-19 96.7 78 64.1
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.1e-18 96.3 78 66.7
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.5e-18 95.9 81 61.7
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.5e-18 95.9 77 63.6
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.5e-18 95.9 88 61.4
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.9e-18 95.5 77 63.6
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 1.9e-18 95.5 77 63.6
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.5e-18 95.1 81 60.5
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 3.3e-18 94.7 88 60.2
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 3.3e-18 94.7 77 62.3
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 4.2e-18 94.4 79 62.0
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 5.5e-18 94.0 97 53.6
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 7.2e-18 93.6 72 65.3
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 7.2e-18 93.6 84 59.5
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 9.5e-18 93.2 77 59.7
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 9.5e-18 93.2 77 59.7
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 1.2e-17 92.8 74 64.9
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.2e-17 92.8 78 61.5
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.2e-17 92.8 77 61.0
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.2e-17 92.8 95 56.8
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 1.6e-17 92.4 77 59.7
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 1.6e-17 92.4 77 59.7
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 2.8e-17 91.7 80 61.2
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 2.8e-17 91.7 76 59.2
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.6e-17 91.3 87 56.3
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 6.1e-17 90.5 76 57.9
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 6.1e-17 90.5 78 61.5
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 8.0e-17 90.1 76 61.8
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 8.0e-17 90.1 76 61.8
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 8.0e-17 90.1 91 53.8
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.0e-16 89.7 78 56.4
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.0e-16 89.7 76 61.8
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.0e-16 89.7 81 59.3
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.4e-16 89.4 76 56.6
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.4e-16 89.4 78 61.5
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 1.8e-16 89.0 76 63.2
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.8e-16 89.0 77 58.4
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.8e-16 89.0 89 53.9
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 2.3e-16 88.6 92 52.2
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 2.3e-16 88.6 74 63.5
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.0e-16 87.8 92 51.1
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 5.2e-16 87.4 75 56.0
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 5.2e-16 87.4 75 61.3
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 8.9e-16 86.7 76 56.6
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.2e-15 86.3 80 57.5
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.4e-15 84.3 78 56.4
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 7.5e-15 83.6 86 53.5
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 7.5e-15 83.6 76 53.9
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 7.5e-15 83.6 91 48.4
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 9.8e-15 83.2 76 55.3
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 9.8e-15 83.2 80 57.5
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.3e-14 82.8 77 55.8
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 1.3e-14 82.8 85 52.9
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.7e-14 82.4 77 55.8
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 2.2e-14 82.0 76 55.3
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 2.9e-14 81.6 80 53.8
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 2.9e-14 81.6 90 47.8
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.7e-14 81.3 73 54.8
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 8.3e-14 80.1 76 52.6
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 8.3e-14 80.1 90 50.0
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 5.4e-13 77.4 76 53.9
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.0e-12 75.5 81 54.3
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 2.7e-12 75.1 80 51.2
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 3.5e-12 74.7 78 48.7
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.0e-11 73.2 87 44.8
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 6.6e-11 70.5 85 45.9
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 2.1e-09 65.5 70 51.4
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.4e-08 62.8 75 49.3
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.8e-08 62.4 81 48.1
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 4.0e-08 61.2 69 49.3
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 2.0e-07 58.9 60 53.3
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 2.0e-07 58.9 60 53.3
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 2.6e-07 58.5 31 80.6
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.4e-07 58.2 85 43.5
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 3.4e-07 58.2 76 47.4
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 3.4e-07 58.2 105 39.0
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.7e-06 55.8 91 40.7
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.9e-06 55.1 91 39.6
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.9e-06 55.1 97 39.2
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 6.4e-06 53.9 31 71.0


User provided reference genes

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