Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.5e-95 352.8 177 100.0
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.1e-89 330.9 192 89.6
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.0e-75 287.0 176 85.2
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.1e-49 199.5 120 85.8
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.1e-49 199.5 120 85.8
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.8e-41 171.8 102 86.3
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 8.1e-41 171.0 112 77.7
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.2e-39 167.2 112 75.0
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 1.2e-39 167.2 112 74.1
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 1.2e-39 167.2 112 75.9
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.4e-39 165.6 112 74.1
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.4e-39 165.6 112 74.1
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 4.4e-39 165.2 129 66.7
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.8e-39 164.9 102 81.4
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.8e-39 164.9 102 81.4
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.8e-39 164.9 102 81.4
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 5.8e-39 164.9 102 81.4
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 5.8e-39 164.9 102 81.4
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 5.8e-39 164.9 102 81.4
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 7.6e-39 164.5 102 80.4
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 7.6e-39 164.5 102 80.4
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 7.6e-39 164.5 113 72.6
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 7.6e-39 164.5 102 81.4
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 7.6e-39 164.5 102 80.4
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 9.9e-39 164.1 102 80.4
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 9.9e-39 164.1 111 73.9
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 1.3e-38 163.7 102 81.4
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 1.3e-38 163.7 112 73.2
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 1.7e-38 163.3 112 73.2
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.7e-38 163.3 102 80.4
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.7e-38 163.3 102 80.4
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 1.7e-38 163.3 112 73.2
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.7e-38 163.3 102 78.4
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 1.7e-38 163.3 102 79.4
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.7e-38 163.3 112 73.2
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 2.2e-38 162.9 102 78.4
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 2.2e-38 162.9 102 78.4
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 2.9e-38 162.5 102 79.4
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 2.9e-38 162.5 112 72.3
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 2.9e-38 162.5 112 75.0
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 2.9e-38 162.5 102 78.4
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 2.9e-38 162.5 102 76.5
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 2.9e-38 162.5 102 78.4
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.9e-38 162.5 100 82.0
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 2.9e-38 162.5 112 72.3
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 3.8e-38 162.2 112 71.4
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 3.8e-38 162.2 102 78.4
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 3.8e-38 162.2 112 74.1
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 3.8e-38 162.2 112 74.1
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 3.8e-38 162.2 112 74.1
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 3.8e-38 162.2 112 74.1
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 3.8e-38 162.2 102 79.4
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 4.9e-38 161.8 112 74.1
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 4.9e-38 161.8 113 71.7
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 4.9e-38 161.8 102 79.4
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 4.9e-38 161.8 112 73.2
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 4.9e-38 161.8 102 78.4
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 4.9e-38 161.8 102 78.4
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 6.4e-38 161.4 102 79.4
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 6.4e-38 161.4 112 73.2
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 6.4e-38 161.4 112 72.3
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 6.4e-38 161.4 102 77.5
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 8.4e-38 161.0 102 77.5
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 8.4e-38 161.0 121 67.8
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 8.4e-38 161.0 103 76.7
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 8.4e-38 161.0 102 75.5
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 1.1e-37 160.6 102 77.5
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 1.1e-37 160.6 102 77.5
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 1.1e-37 160.6 102 76.5
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 1.1e-37 160.6 102 77.5
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 1.1e-37 160.6 102 77.5
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 1.1e-37 160.6 112 71.4
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 1.4e-37 160.2 102 77.5
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 1.4e-37 160.2 102 77.5
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 1.4e-37 160.2 102 76.5
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 1.4e-37 160.2 112 72.3
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 1.4e-37 160.2 102 76.5
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 1.9e-37 159.8 102 77.5
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 1.9e-37 159.8 111 72.1
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 1.9e-37 159.8 112 71.4
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 1.9e-37 159.8 112 71.4
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 1.9e-37 159.8 112 72.3
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 1.9e-37 159.8 102 76.5
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 2.4e-37 159.5 112 72.3
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 2.4e-37 159.5 113 70.8
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.4e-37 159.5 102 75.5
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.4e-37 159.5 102 75.5
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.4e-37 159.5 102 75.5
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 2.4e-37 159.5 113 70.8
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.2e-37 159.1 100 79.0
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 3.2e-37 159.1 121 66.9
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 3.2e-37 159.1 121 66.9
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 3.2e-37 159.1 121 66.9
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 3.2e-37 159.1 102 74.5
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 4.2e-37 158.7 102 75.5
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 4.2e-37 158.7 112 72.3
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 5.4e-37 158.3 102 76.5
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 5.4e-37 158.3 112 72.3
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 5.4e-37 158.3 100 78.0
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 7.1e-37 157.9 112 68.8
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 7.1e-37 157.9 112 68.8
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 7.1e-37 157.9 102 73.5
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 9.3e-37 157.5 102 74.5
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 9.3e-37 157.5 102 74.5
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 9.3e-37 157.5 102 77.5
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 9.3e-37 157.5 102 77.5
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 9.3e-37 157.5 112 71.4
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 1.2e-36 157.1 102 73.5
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 1.2e-36 157.1 102 77.5
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 1.6e-36 156.8 102 74.5
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.6e-36 156.8 103 74.8
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 1.6e-36 156.8 111 73.0
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 1.6e-36 156.8 115 70.4
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 2.1e-36 156.4 112 67.9
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 2.1e-36 156.4 102 74.5
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 2.7e-36 156.0 112 67.0
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 2.7e-36 156.0 112 67.0
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 2.7e-36 156.0 112 67.0
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 2.7e-36 156.0 112 67.0
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 2.7e-36 156.0 112 67.0
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 2.7e-36 156.0 112 67.0
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 2.7e-36 156.0 112 67.0
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 3.5e-36 155.6 102 76.5
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 3.5e-36 155.6 102 75.5
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 3.5e-36 155.6 105 70.5
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 4.6e-36 155.2 102 73.5
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 4.6e-36 155.2 112 68.8
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 6.0e-36 154.8 112 66.1
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 6.0e-36 154.8 112 66.1
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 6.0e-36 154.8 112 66.1
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 6.0e-36 154.8 112 65.2
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 6.0e-36 154.8 102 74.5
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 7.9e-36 154.5 112 65.2
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 7.9e-36 154.5 112 65.2
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 7.9e-36 154.5 112 65.2
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 7.9e-36 154.5 111 71.2
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 7.9e-36 154.5 115 68.7
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 7.9e-36 154.5 94 83.0
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 7.9e-36 154.5 102 71.6
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 1.3e-35 153.7 100 73.0
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 1.3e-35 153.7 100 73.0
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 1.3e-35 153.7 102 74.5
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 1.7e-35 153.3 112 67.9
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 1.7e-35 153.3 102 74.5
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.7e-35 153.3 102 73.5
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 1.7e-35 153.3 105 68.6
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 3.0e-35 152.5 102 71.6
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 6.6e-35 151.4 100 72.0
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 1.1e-34 150.6 97 75.3
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 1.9e-34 149.8 100 71.0
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 1.9e-34 149.8 105 69.5
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 3.3e-34 149.1 105 66.7
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 4.8e-33 145.2 100 74.0
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 6.2e-33 144.8 95 75.8
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 6.2e-33 144.8 95 75.8
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.4e-32 142.9 120 63.3
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 1.7e-30 136.7 101 64.4
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 2.2e-30 136.3 93 68.8
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 1.4e-29 133.7 103 62.1
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 3.9e-27 125.6 68 86.8
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 5.1e-27 125.2 67 88.1
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 5.1e-27 125.2 99 61.6
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 6.7e-27 124.8 113 58.4
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 8.7e-27 124.4 90 68.9
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 1.9e-26 123.2 67 85.1
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 3.3e-26 122.5 99 58.6
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 1.6e-25 120.2 104 60.6
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 8.1e-25 117.9 68 79.4
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 2.6e-23 112.8 94 62.8
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 4.5e-23 112.1 66 80.3
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.5e-21 105.1 61 82.0
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.7e-19 98.2 46 97.8
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 8.7e-19 97.8 104 51.0
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 4.8e-17 92.0 58 74.1
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 1.8e-16 90.1 104 39.4
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 9.0e-16 87.8 85 52.9
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 1.3e-14 84.0 45 86.7
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 6.5e-14 81.6 42 88.1
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 6.5e-14 81.6 42 88.1
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 8.4e-14 81.3 71 60.6
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 9.3e-13 77.8 61 62.3
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 3.5e-12 75.9 76 57.9
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 8.2e-09 64.7 35 82.9
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 2.6e-07 59.7 71 47.9


User provided reference genes

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