Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.6e-132 476.1 242 100.0
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.6e-132 474.9 242 99.6
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.8e-131 470.7 242 99.2
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.5e-109 399.1 207 98.1
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.2e-96 354.0 216 87.0
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 5.3e-83 311.6 209 78.0
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.3e-73 280.4 165 83.6
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.3e-70 270.4 207 70.0
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.5e-69 266.9 212 68.4
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.1e-67 259.2 207 67.6
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 3.1e-67 259.2 209 69.9
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 3.1e-67 259.2 208 71.2
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 5.3e-67 258.5 200 68.0
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 5.3e-67 258.5 208 71.2
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.2e-66 257.3 177 74.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.0e-66 256.5 203 67.0
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.6e-66 256.1 214 66.4
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 2.6e-66 256.1 199 71.9
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 2.6e-66 256.1 199 67.8
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.5e-66 255.4 203 67.5
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 7.6e-66 254.6 205 68.8
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.3e-65 253.8 208 69.2
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.3e-65 253.8 175 74.3
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.9e-65 252.7 170 75.3
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 3.8e-65 252.3 208 65.4
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 4.9e-65 251.9 214 66.4
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 6.5e-65 251.5 196 69.4
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 6.5e-65 251.5 152 82.2
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 6.5e-65 251.5 208 64.9
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 8.4e-65 251.1 196 68.4
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.1e-64 250.8 208 68.8
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 2.5e-64 249.6 195 69.2
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 2.5e-64 249.6 184 70.7
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 3.2e-64 249.2 202 68.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 3.2e-64 249.2 203 68.5
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 3.2e-64 249.2 183 69.9
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 5.5e-64 248.4 193 68.9
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 9.3e-64 247.7 210 65.7
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.2e-63 247.3 211 65.9
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.2e-63 247.3 204 67.6
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.6e-63 246.9 197 68.0
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 2.1e-63 246.5 209 65.1
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 2.1e-63 246.5 186 70.4
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 2.1e-63 246.5 185 69.7
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.7e-63 246.1 195 67.2
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 3.5e-63 245.7 198 68.7
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 3.5e-63 245.7 144 82.6
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 4.6e-63 245.4 196 68.9
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 6.0e-63 245.0 196 67.9
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.0e-62 244.2 196 68.4
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.0e-62 244.2 210 64.8
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.0e-62 244.2 206 65.0
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.0e-62 244.2 183 71.6
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.3e-62 243.8 207 66.2
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.3e-62 243.8 193 68.4
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.3e-62 243.8 198 67.2
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 1.3e-62 243.8 198 68.2
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 1.3e-62 243.8 209 65.1
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 3.9e-62 242.3 201 69.2
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 5.1e-62 241.9 184 69.6
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 6.7e-62 241.5 200 65.5
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.1e-61 240.7 173 71.7
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.1e-61 240.7 209 65.6
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 1.1e-61 240.7 184 69.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 1.1e-61 240.7 184 69.0
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.9e-61 240.0 211 65.9
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 1.9e-61 240.0 197 66.5
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.9e-61 240.0 177 70.6
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 2.5e-61 239.6 198 67.2
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 3.3e-61 239.2 208 64.4
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 3.3e-61 239.2 179 70.4
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 4.3e-61 238.8 214 63.6
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 4.3e-61 238.8 188 67.6
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 5.7e-61 238.4 192 65.6
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.3e-60 237.3 215 64.7
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 1.6e-60 236.9 209 64.1
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 2.8e-60 236.1 202 62.4
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 3.7e-60 235.7 147 80.3
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 6.2e-60 235.0 211 64.0
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 8.2e-60 234.6 185 68.6
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.4e-59 233.8 176 72.2
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 2.4e-59 233.0 186 68.3
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 2.4e-59 233.0 211 61.6
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.1e-59 232.6 203 64.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.3e-59 231.9 203 63.1
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 5.3e-59 231.9 259 54.4
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 6.9e-59 231.5 211 62.6
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.2e-58 230.7 203 63.5
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.2e-58 230.7 203 63.5
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.2e-58 230.7 203 63.5
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.5e-58 230.3 185 66.5
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-58 230.3 203 63.5
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 1.5e-58 230.3 213 62.4
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.6e-58 229.6 202 64.9
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 7.6e-58 228.0 180 68.9
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 7.6e-58 228.0 207 61.8
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.0e-57 227.6 204 63.7
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 5.0e-57 225.3 179 67.6
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.1e-56 224.2 212 62.7
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 5.5e-56 221.9 193 62.7
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 9.3e-56 221.1 184 66.3
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.6e-55 218.8 209 61.2
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 6.1e-55 218.4 146 74.7
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.8e-54 216.9 208 61.1
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 3.9e-54 215.7 189 64.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.1e-53 214.2 146 74.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.3e-51 205.3 194 57.2
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.6e-50 203.0 212 57.5
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 4.5e-50 202.2 157 66.2
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.3e-49 200.7 112 86.6
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.9e-49 199.5 199 58.8
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.8e-46 190.3 202 55.0
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.8e-46 190.3 159 62.9
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 2.3e-46 189.9 121 77.7
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 6.7e-46 188.3 284 44.0
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.0e-45 186.8 230 53.5
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.3e-44 184.1 147 66.0
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 3.7e-44 182.6 211 51.7
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.1e-43 181.0 109 77.1
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.2e-42 177.6 144 63.2
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.0e-42 176.8 137 66.4
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 7.7e-42 174.9 146 61.0
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.0e-41 174.5 197 50.3
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.0e-41 174.5 197 50.3
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 2.5e-40 169.9 91 92.3
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.4e-38 164.1 111 73.0
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.8e-38 163.7 111 73.0
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 5.3e-35 152.1 210 47.6
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.2e-34 151.0 184 48.4
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.0e-33 147.9 188 46.8
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 3.8e-33 146.0 84 83.3
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 5.0e-33 145.6 160 50.0
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 5.5e-32 142.1 128 56.2
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 3.0e-30 136.3 97 61.9
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.0e-30 136.0 142 59.2
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 5.2e-30 135.6 185 44.3
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 8.8e-30 134.8 123 54.5
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 8.2e-28 128.3 70 88.6
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-26 124.4 67 89.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-26 124.4 67 89.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.6e-23 114.0 83 69.9
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 9.8e-21 104.8 86 62.8
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 3.5e-18 96.3 128 43.8
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 4.5e-18 95.9 70 70.0
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 8.8e-14 81.6 50 76.0
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 7.3e-08 62.0 122 40.2
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 1.0e-06 58.2 38 73.7


User provided reference genes

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