Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 0.0e+00 1418.3 744 100.0
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 5.9e-202 708.4 802 56.1
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.4e-139 501.1 832 44.2
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 8.7e-137 491.9 780 44.5
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 3.4e-133 479.9 846 43.1
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 4.1e-126 456.4 764 43.8
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.6e-122 443.4 596 50.0
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.7e-116 424.5 592 48.6
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 4.2e-115 419.9 789 40.7
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 5.5e-115 419.5 788 40.9
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 2.1e-114 417.5 787 41.7
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.3e-112 410.2 798 40.9
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 2.8e-111 407.1 782 39.5
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 5.9e-109 399.4 801 39.5
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 2.7e-106 390.6 754 40.6
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.5e-104 384.8 772 40.4
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 7.0e-102 375.9 766 38.6
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.2e-101 375.2 762 38.8
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.1e-94 352.1 766 36.6
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.8e-94 351.3 692 38.7
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.0e-93 347.8 827 38.6
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 5.5e-91 339.7 763 36.6
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 1.4e-86 325.1 766 37.1
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 7.0e-86 322.8 779 36.3
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 2.9e-84 317.4 797 36.0
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 1.4e-81 308.5 675 37.9
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.8e-81 308.1 797 36.0
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 4.0e-81 307.0 777 35.8
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.8e-81 306.2 758 33.6
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 2.9e-79 300.8 762 35.4
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 3.9e-76 290.4 766 34.5
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 6.6e-76 289.7 754 34.2
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 2.5e-75 287.7 758 34.2
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 7.3e-75 286.2 742 34.1
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 1.6e-74 285.0 742 34.0
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 2.1e-74 284.6 787 34.4
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 7.5e-72 276.2 905 31.8
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.3e-71 275.4 808 34.5
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.7e-71 275.0 803 33.7
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 8.3e-71 272.7 827 33.7
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 1.1e-70 272.3 772 34.7
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.1e-70 272.3 788 33.8
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.4e-70 271.9 689 36.3
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 7.0e-70 269.6 764 34.8
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 9.2e-70 269.2 912 31.8
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 3.5e-69 267.3 805 33.7
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 3.3e-67 260.8 792 31.8
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.3e-67 260.4 766 31.7
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 1.6e-66 258.5 782 32.9
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 6.2e-66 256.5 366 47.8
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 4.9e-63 246.9 437 41.4
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.9e-62 245.0 795 32.8
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.4e-62 243.4 742 32.5
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 9.2e-62 242.7 804 32.7
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.6e-61 241.9 635 34.8
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 1.7e-60 238.4 765 32.5
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 5.1e-60 236.9 758 34.0
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 3.3e-59 234.2 753 31.5
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.6e-59 233.4 764 34.6
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.3e-57 228.0 749 31.9
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 4.0e-57 227.3 730 31.8
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.2e-57 226.9 765 32.9
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.2e-56 225.7 817 29.5
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 6.4e-55 219.9 444 40.3
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 5.4e-54 216.9 534 34.8
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 5.4e-54 216.9 164 75.0
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 6.0e-53 213.4 401 40.6
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.8e-53 213.0 761 33.1
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 5.1e-52 210.3 762 31.1
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 3.3e-51 207.6 442 38.0
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.3e-51 207.2 762 29.9
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.2e-50 205.7 602 31.7
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 3.6e-50 204.1 403 40.2
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 8.1e-50 203.0 435 39.1
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 1.1e-49 202.6 762 31.2
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 3.1e-49 201.1 408 37.5
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 9.9e-48 196.1 468 37.2
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 6.4e-47 193.4 764 29.7
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 3.2e-46 191.0 607 31.8
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 6.0e-45 186.8 146 67.8
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.5e-43 181.4 382 38.5
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 2.5e-43 181.4 815 29.6
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 5.6e-43 180.3 768 28.6
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 5.6e-43 180.3 367 38.1
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 3.6e-42 177.6 339 40.7
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 3.1e-41 174.5 759 29.9
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 5.3e-41 173.7 745 29.5
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 8.4e-39 166.4 536 33.2
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 5.4e-38 163.7 500 33.4
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 2.1e-37 161.8 614 29.6
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 4.6e-37 160.6 623 30.8
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.3e-36 159.1 536 32.1
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.1e-34 151.8 542 31.5
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 8.1e-34 149.8 377 35.0
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 4.0e-33 147.5 283 39.2
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 5.3e-33 147.1 275 39.6
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.2e-32 146.0 392 34.9
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.5e-32 145.6 339 37.5
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 9.9e-32 142.9 281 38.4
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.2e-31 141.7 284 37.7
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 1.9e-30 138.7 301 36.5
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.9e-30 138.7 295 35.9
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 5.5e-30 137.1 496 31.2
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 5.5e-30 137.1 352 35.5
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 5.5e-30 137.1 679 27.5
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 7.1e-30 136.7 805 27.8
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 1.2e-29 136.0 339 34.5
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 2.1e-29 135.2 271 36.5
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 3.5e-29 134.4 270 37.4
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 4.6e-29 134.0 724 27.8
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.0e-28 132.9 427 31.1
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.9e-27 128.6 509 30.1
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 2.5e-27 128.3 451 30.8
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 5.6e-27 127.1 337 35.0
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 7.4e-27 126.7 749 26.3
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 9.6e-27 126.3 506 28.9
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 2.1e-26 125.2 504 28.6
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 2.1e-26 125.2 301 35.9
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.8e-26 124.8 245 40.0
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 4.8e-26 124.0 489 29.2
Actinidia05492 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.1e-25 122.9 95 70.5
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.8e-25 122.1 302 36.1
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 4.0e-25 120.9 93 60.2
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 6.9e-25 120.2 235 39.6
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 2.9e-23 114.8 272 34.2
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 1.4e-22 112.5 215 42.3
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.9e-22 112.1 270 33.7
Solyc02g081640.4 Solanum lycopersicum HOM05D003739 ORTHO05D003996 4.2e-22 110.9 408 31.4
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 9.3e-22 109.8 217 37.3
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 1.2e-21 109.4 469 29.4
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 2.1e-21 108.6 358 30.7
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.8e-20 105.5 411 28.5
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 6.7e-20 103.6 405 28.1
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 3.3e-19 101.3 500 27.6
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 4.3e-19 100.9 504 27.4
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 4.8e-18 97.4 146 43.8
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 1.4e-17 95.9 215 37.2
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.5e-16 92.4 150 42.0
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.5e-16 92.4 150 42.0
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.6e-16 91.7 261 31.0
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 2.6e-16 91.7 112 44.6
CSS0044417 Camellia sinensis var. sinensis HOM05D036181 ORTHO05D003996 7.6e-16 90.1 115 49.6
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 7.6e-16 90.1 200 36.0
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.0e-15 89.7 62 66.1
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 1.3e-15 89.4 540 26.9
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.2e-14 84.3 263 28.1
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.2e-14 84.3 152 37.5
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 5.5e-14 84.0 266 30.1
CSS0038951 Camellia sinensis var. sinensis HOM05D036181 ORTHO05D003996 4.6e-13 80.9 115 47.0
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 6.1e-13 80.5 568 23.9
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 7.9e-13 80.1 92 42.4
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 5.1e-12 77.4 61 65.6
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 1.1e-11 76.3 160 34.4
CSS0009790 Camellia sinensis var. sinensis HOM05D036181 ORTHO05D003996 1.9e-11 75.5 101 49.5
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.9e-11 75.5 105 38.1
Lj8A306T63 Lonicera japonica HOM05D003739 ORTHO05D003996 2.5e-11 75.1 97 52.6
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 7.4e-11 73.6 56 64.3
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 6.3e-10 70.5 213 33.8
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.8e-09 68.9 131 37.4
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 3.1e-09 68.2 300 27.7
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 2.0e-08 65.5 80 47.5
Thecc.07G171200 Theobroma cacao HOM05D003739 ORTHO05D003996 2.2e-07 62.0 153 35.3
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 3.8e-07 61.2 65 47.7
Atru.chr5.3066 Acer truncatum HOM05D003739 ORTHO05D003996 3.2e-06 58.2 346 23.7


User provided reference genes

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