Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038117 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 6.9e-84 313.9 158 100.0
CSS0012919 Camellia sinensis var. sinensis HOM05D018052 ORTHO05D009086 1.1e-33 147.1 147 59.2
CSS0029216 Camellia sinensis var. sinensis HOM05D018052 ORTHO05D009086 1.9e-33 146.4 146 58.9
CSS0028308 Camellia sinensis var. sinensis HOM05D018052 ORTHO05D009802 1.0e-23 114.0 169 43.2
ClCG09G017780 Citrullus lanatus HOM05D007602 ORTHO05D009086 1.1e-20 104.0 63 74.6
Hma1.2p1_0584F.1_g183350 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 4.6e-19 98.6 54 81.5
CSS0047449 Camellia sinensis var. sinensis HOM05D002223 ORTHO05D009240 1.0e-18 97.4 76 68.4
MELO3C021943.2 Cucumis melo HOM05D007602 ORTHO05D009086 1.0e-18 97.4 55 80.0
CsaV3_2G014370 Cucumis sativus L. HOM05D007602 ORTHO05D009086 1.0e-18 97.4 55 80.0
Lj5E203T0 Lonicera japonica HOM05D007602 ORTHO05D009086 1.0e-18 97.4 60 75.0
PGR042G2915 Punica granatum HOM05D007602 ORTHO05D009086 2.3e-18 96.3 55 78.2
CAN.G322.99 Capsicum annuum HOM05D007602 ORTHO05D009086 5.0e-18 95.1 55 72.7
Duzib132G1115 Durio zibethinus HOM05D007602 ORTHO05D009086 1.1e-17 94.0 55 74.5
Gohir.A04G129200 Gossypium hirsutum HOM05D007602 ORTHO05D009086 2.5e-17 92.8 55 72.7
Gorai.012G163800 Gossypium raimondii HOM05D007602 ORTHO05D009086 2.5e-17 92.8 55 72.7
Sed0020423 Sechium edule HOM05D007602 ORTHO05D009086 2.5e-17 92.8 55 74.5
Gohir.A04G129300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 5.6e-17 91.7 55 72.7
Gohir.D04G174400 Gossypium hirsutum HOM05D007602 ORTHO05D009086 5.6e-17 91.7 55 72.7
Gorai.012G163900 Gossypium raimondii HOM05D007602 ORTHO05D009086 5.6e-17 91.7 55 72.7
Thecc.08G131300 Theobroma cacao HOM05D007602 ORTHO05D009086 5.6e-17 91.7 55 74.5
Ciclev10029767m.g Citrus clementina HOM05D007602 ORTHO05D009086 7.3e-17 91.3 55 72.7
Manes.17G097600 Manihot esculenta HOM05D007602 ORTHO05D009086 7.3e-17 91.3 55 70.9
Sed0019655 Sechium edule HOM05D007602 ORTHO05D009086 7.3e-17 91.3 55 72.7
Manes.15G146500 Manihot esculenta HOM05D007602 ORTHO05D009086 9.5e-17 90.9 55 70.9
Oeu007232.1 Olea europaea HOM05D007602 ORTHO05D009086 9.5e-17 90.9 55 72.7
Potri.004G149200 Populus trichocarpa HOM05D007602 ORTHO05D009086 1.2e-16 90.5 55 72.7
CSS0013032 Camellia sinensis var. sinensis HOM05D018052 ORTHO05D000165 1.6e-16 90.1 68 73.5
Gohir.D04G174300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 1.6e-16 90.1 55 70.9
Gorai.004G104500 Gossypium raimondii HOM05D007602 ORTHO05D009086 1.6e-16 90.1 55 70.9
Hma1.2p1_1353F.1_g277670 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 1.6e-16 90.1 55 69.1
Hma1.2p1_2724F.1_g327525 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 1.6e-16 90.1 55 69.1
Solyc01g109220.4 Solanum lycopersicum HOM05D007602 ORTHO05D009086 2.1e-16 89.7 55 67.3
PGSC0003DMG400025161 Solanum tuberosum HOM05D007602 ORTHO05D009086 2.1e-16 89.7 55 67.3
Cfa004963 Carpinus fangiana HOM05D007602 ORTHO05D009086 4.7e-16 88.6 55 70.9
Migut.B00282 Erythranthe guttata HOM05D007602 ORTHO05D009086 4.7e-16 88.6 55 69.1
Medtr4g068710 Medicago truncatula HOM05D007602 ORTHO05D009086 4.7e-16 88.6 55 70.9
Thecc.02G030000 Theobroma cacao HOM05D007602 ORTHO05D009086 4.7e-16 88.6 55 70.9
Lsat_1_v5_gn_9_109200 Lactuca sativa HOM05D007602 ORTHO05D009086 6.2e-16 88.2 54 72.2
Haze_02438 Corylus avellana HOM05D007602 ORTHO05D009086 8.1e-16 87.8 53 71.7
Sabra04G0099200 Salix brachista HOM05D007602 ORTHO05D009086 8.1e-16 87.8 53 71.7
Ca_07356_v3 Cicer arietinum L. HOM05D007602 ORTHO05D009086 1.1e-15 87.4 55 67.3
AL1G56570 Arabidopsis lyrata HOM05D007602 ORTHO05D009086 1.4e-15 87.0 55 70.9
Potri.009G110100 Populus trichocarpa HOM05D007602 ORTHO05D009086 1.8e-15 86.7 55 69.1
Carub.0001s3861 Capsella rubella HOM05D007602 ORTHO05D009086 2.3e-15 86.3 55 70.9
CiPaw.05G059500 Carya illinoinensis HOM05D007602 ORTHO05D009086 3.1e-15 85.9 55 67.3
Duzib248G0323 Durio zibethinus HOM05D007602 ORTHO05D009086 3.1e-15 85.9 55 67.3
Duzib248G0595 Durio zibethinus HOM05D007602 ORTHO05D009086 3.1e-15 85.9 55 67.3
Duzib248G1495 Durio zibethinus HOM05D007602 ORTHO05D009086 3.1e-15 85.9 55 67.3
Glyma.11G122300 Glycine max HOM05D007602 ORTHO05D009086 5.2e-15 85.1 55 67.3
AT1G49410 Arabidopsis thaliana HOM05D007602 ORTHO05D009086 6.8e-15 84.7 55 67.3
CSS0037818 Camellia sinensis var. sinensis HOM05D006495 ORTHO05D009652 6.8e-15 84.7 76 59.2
Lj3g0015904 Lotus japonicus HOM05D007602 ORTHO05D009086 6.8e-15 84.7 55 65.5
CARHR039420 Cardamine hirsuta HOM05D007602 ORTHO05D009086 8.9e-15 84.3 55 67.3
BcaB04g17343 Brassica carinata HOM05D007602 ORTHO05D009086 1.2e-14 84.0 55 69.1
Cpa.g.sc62.91 Carica papaya HOM05D007602 ORTHO05D009086 1.2e-14 84.0 55 65.5
COL.COLO4_17788 Corchorus olitorius HOM05D007602 ORTHO05D009086 1.2e-14 84.0 55 65.5
BcaB02g11073 Brassica carinata HOM05D007602 ORTHO05D009086 1.5e-14 83.6 55 65.5
DCAR_022083 Daucus carota HOM05D007602 ORTHO05D009086 2.0e-14 83.2 55 67.3
CSS0045317 Camellia sinensis var. sinensis HOM05D018052 ORTHO05D109946 2.6e-14 82.8 62 69.4
Glyma.12G047200 Glycine max HOM05D007602 ORTHO05D009086 2.6e-14 82.8 55 65.5
Phvul.011G049200 Phaseolus vulgaris HOM05D007602 ORTHO05D009086 2.6e-14 82.8 55 65.5
A08p03960 Brassica napus HOM05D007602 ORTHO05D009086 3.4e-14 82.4 55 69.1
TWI31G0092 Tripterygium wilfordii HOM05D007602 ORTHO05D009086 3.4e-14 82.4 55 67.3
CANSAT25G1814 Cannabis sativa HOM05D007602 ORTHO05D009086 4.4e-14 82.0 55 63.6
Nn6g32178 Nelumbo nucifera HOM05D007602 ORTHO05D009086 5.8e-14 81.6 55 67.3
Thhalv10011932m.g Eutrema salsugineum HOM05D007602 ORTHO05D009086 9.8e-14 80.9 55 63.6
CSS0027926 Camellia sinensis var. sinensis HOM05D000206 ORTHO05D000232 1.3e-13 80.5 53 73.6
Glyma.12G082000 Glycine max HOM05D007602 ORTHO05D009086 1.3e-13 80.5 53 64.2
Prupe.8G107900 Prunus persica HOM05D007602 ORTHO05D009086 1.7e-13 80.1 55 63.6
Aa31LG10G4570 Aethionema arabicum HOM05D007602 ORTHO05D009086 2.2e-13 79.7 56 66.1
THA.LOC104798806 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 2.2e-13 79.7 55 67.3
THA.LOC104808449 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 2.2e-13 79.7 55 67.3
CSS0035935 Camellia sinensis var. sinensis HOM05D018052 ORTHO05D110269 2.9e-13 79.3 62 67.7
Lalb_Chr01g0002891 Lupinus albus HOM05D007602 ORTHO05D009086 3.7e-13 79.0 55 60.0
Lalb_Chr03g0025901 Lupinus albus HOM05D007602 ORTHO05D009086 6.4e-13 78.2 55 60.0
ECA240G4508 Erigeron canadensis HOM05D007602 ORTHO05D009086 8.3e-13 77.8 52 65.4
TAR381G0702 Trochodendron aralioides HOM05D007602 ORTHO05D009086 1.1e-12 77.4 55 61.8
VMungo1127G0479 Vigna mungo HOM05D007602 ORTHO05D009086 1.1e-12 77.4 51 66.7
CSS0018387 Camellia sinensis var. sinensis HOM05D018052 ORTHO05D009802 1.4e-12 77.0 65 64.6
Nn5g29445 Nelumbo nucifera HOM05D007602 ORTHO05D009086 1.9e-12 76.6 55 63.6
Glyma.16G059100 Glycine max HOM05D007602 ORTHO05D009086 3.2e-12 75.9 51 64.7
FAN20G1774 Fragaria x ananassa HOM05D007602 ORTHO05D009086 1.2e-11 73.9 52 59.6
MD10G1085000 Malus domestica HOM05D007602 ORTHO05D009086 2.1e-11 73.2 55 63.6
RcHm_v2.0_Chr6g0262021 Rosa chinensis HOM05D007602 ORTHO05D009086 3.5e-11 72.4 52 57.7
Atru.chr12.1346 Acer truncatum HOM05D007602 ORTHO05D009086 4.6e-11 72.0 52 57.7
BcaC07g37055 Brassica carinata HOM05D003421 ORTHO05D009086 6.0e-11 71.6 46 71.7
AUR62037762 Chenopodium quinoa HOM05D007602 ORTHO05D009086 6.0e-11 71.6 53 60.4
MD00G1073700 Malus domestica HOM05D007602 ORTHO05D009086 3.9e-10 68.9 55 61.8
unitig_21.g20769 Utricularia gibba HOM05D007602 ORTHO05D009086 5.1e-10 68.6 40 75.0
Aa31LG8G5770 Aethionema arabicum HOM05D000086 ORTHO05D008850 6.6e-10 68.2 74 47.3
CSS0025348 Camellia sinensis var. sinensis HOM05D026757 ORTHO05D009802 1.1e-09 67.4 55 67.3
Sopen10g022680 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-09 67.4 41 68.3
SGA_v2.0_scaffold32G13134 Striga asiatica HOM05D000790 ORTHO05D000769 1.5e-09 67.0 42 69.0
AUR62038779 Chenopodium quinoa HOM05D007602 ORTHO05D009086 5.6e-09 65.1 57 54.4
MD11G1171200 Malus domestica HOM05D007602 ORTHO05D009086 5.6e-09 65.1 53 58.5
CSS0032371 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 7.3e-09 64.7 35 82.9
CSS0040047 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D109333 9.5e-09 64.3 42 76.2
HPP92_000754 Vanilla planifolia HOM05D001821 ORTHO05D009086 9.5e-09 64.3 56 46.4
CSS0024975 Camellia sinensis var. sinensis HOM05D026757 ORTHO05D007247 1.2e-08 63.9 55 65.5
CSS0004827 Camellia sinensis var. sinensis HOM05D000035 ORTHO05D000009 1.6e-08 63.5 65 55.4
CSS0011426 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 1.6e-08 63.5 47 72.3
Sabra09G0084100 Salix brachista HOM05D007602 ORTHO05D009086 1.6e-08 63.5 44 63.6
vmacro19447 Vaccinium macrocarpon HOM05D007602 ORTHO05D009086 2.1e-08 63.2 40 70.0
SHI05446 Sapria himalayana HOM05D007602 ORTHO05D009086 2.8e-08 62.8 36 77.8
CSS0025347 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 4.7e-08 62.0 55 58.2
CSS0032677 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 4.7e-08 62.0 55 58.2
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 1.1e-07 60.8 60 55.0
Peaxi162Scf00016g01124 Petunia axillaris HOM05D007602 ORTHO05D009086 1.4e-07 60.5 59 49.2
vmacro23386 Vaccinium macrocarpon HOM05D007602 ORTHO05D009086 2.3e-07 59.7 33 78.8
Nitab4.5_0003281g0040 Nicotiana tabacum HOM05D007602 ORTHO05D009086 3.1e-07 59.3 35 68.6
Nitab4.5_0003816g0110 Nicotiana tabacum HOM05D007602 ORTHO05D009086 3.1e-07 59.3 35 68.6
Ah.01g019750 Amaranthus hybridus HOM05D007602 ORTHO05D009086 1.5e-06 57.0 40 62.5
AUR62038947 Chenopodium quinoa HOM05D000691 ORTHO05D000378 1.5e-06 57.0 51 52.9
Pp3c6_6800 Physcomitrium patens HOM05D007602 ORTHO05D009086 2.6e-06 56.2 54 42.6
CSS0000322 Camellia sinensis var. sinensis HOM05D007066 ORTHO05D009013 7.6e-06 54.7 50 58.0


User provided reference genes

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